RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 TFAMQ00059 246 aaKnown RBP-0.13□□□□□ -2.43
VPS50-216ENST00000484954 EMX2Q04743 252 aa-0.13□□□□□ -2.43
VPS50-216ENST00000484954 DDA1Q9BW61 102 aa-0.13□□□□□ -2.43
VPS50-216ENST00000484954 DNAJC15Q9Y5T4 150 aa-0.13□□□□□ -2.43
VPS50-216ENST00000484954 ZNF292O60281 2723 aa-0.13□□□□□ -2.43
VPS50-216ENST00000484954 SPAG17Q6Q759 2223 aa-0.13□□□□□ -2.43
VPS50-216ENST00000484954 PTPRZ1P23471 2315 aaPredicted RBP-0.14□□□□□ -2.43
VPS50-216ENST00000484954 SRRM2Q9UQ35 2752 aaKnown RBP-0.14□□□□□ -2.43
VPS50-216ENST00000484954 A0A1B0GV72 72 aa-0.14□□□□□ -2.43
VPS50-216ENST00000484954 PGRMC1O00264 195 aaKnown RBP-0.14□□□□□ -2.43
VPS50-216ENST00000484954 CD3DP04234 171 aa-0.14□□□□□ -2.43
VPS50-216ENST00000484954 NBEAP1P0C6P0 100 aa-0.14□□□□□ -2.43
VPS50-216ENST00000484954 HSD17B12Q53GQ0 312 aa-0.14□□□□□ -2.43
VPS50-216ENST00000484954 TMEM244Q5VVB8 128 aa-0.14□□□□□ -2.43
VPS50-216ENST00000484954 TMEM91Q6ZNR0 172 aa-0.14□□□□□ -2.43
VPS50-216ENST00000484954 SREK1IP1Q8N9Q2 155 aaPredicted RBP-0.14□□□□□ -2.43
VPS50-216ENST00000484954 TMEM35BQ8NCS4 154 aa-0.14□□□□□ -2.43
VPS50-216ENST00000484954 NDUFAF1Q9Y375 327 aa-0.14□□□□□ -2.43
VPS50-216ENST00000484954 PTPRGP23470 1445 aa-0.14□□□□□ -2.43
VPS50-216ENST00000484954 PIK3C2AO00443 1686 aa-0.14□□□□□ -2.43
VPS50-216ENST00000484954 ADGBQ8N7X0 1667 aa-0.14□□□□□ -2.43
VPS50-216ENST00000484954 NBPF19A0A087WUL8 3843 aa-0.15□□□□□ -2.43
VPS50-216ENST00000484954 ABCA2Q9BZC7 2435 aa-0.15□□□□□ -2.43
VPS50-216ENST00000484954 NBEAL1Q6ZS30 2694 aa-0.15□□□□□ -2.43
VPS50-216ENST00000484954 USP9XQ93008 2570 aaPredicted RBP-0.15□□□□□ -2.43
VPS50-216ENST00000484954 LAMA3Q16787 3333 aa-0.15□□□□□ -2.43
VPS50-216ENST00000484954 A0A1B0GW64 132 aa-0.15□□□□□ -2.43
VPS50-216ENST00000484954 OR2H2O95918 312 aa-0.15□□□□□ -2.43
VPS50-216ENST00000484954 SDC4P31431 198 aa-0.15□□□□□ -2.43
VPS50-216ENST00000484954 PCBD1P61457 104 aa-0.15□□□□□ -2.43
VPS50-216ENST00000484954 LSM3P62310 102 aaKnown RBP-0.15□□□□□ -2.43
VPS50-216ENST00000484954 ESPL1Q14674 2120 aa-0.15□□□□□ -2.43
VPS50-216ENST00000484954 Q5BKY6 102 aa-0.15□□□□□ -2.43
VPS50-216ENST00000484954 SAMD13Q5VXD3 122 aa-0.15□□□□□ -2.43
VPS50-216ENST00000484954 SLC25A26Q70HW3 274 aa-0.15□□□□□ -2.43
VPS50-216ENST00000484954 METTL1Q9UBP6 276 aaKnown RBP-0.15□□□□□ -2.43
VPS50-216ENST00000484954 USP54Q70EL1 1684 aa-0.16□□□□□ -2.44
VPS50-216ENST00000484954 A0A087WTM6 91 aa-0.16□□□□□ -2.44
VPS50-216ENST00000484954 TRBV10-1A0A0K0K1A3 114 aa-0.16□□□□□ -2.44
VPS50-216ENST00000484954 TNFSF15O95150 251 aa-0.16□□□□□ -2.44
VPS50-216ENST00000484954 PYYP10082 97 aa-0.16□□□□□ -2.44
VPS50-216ENST00000484954 OR2T2Q6IF00 324 aa-0.16□□□□□ -2.44
VPS50-216ENST00000484954 V9GYQ6 96 aa-0.16□□□□□ -2.44
VPS50-216ENST00000484954 HSPG2P98160 4391 aa-0.16□□□□□ -2.44
VPS50-216ENST00000484954 HUWE1Q7Z6Z7 4374 aaKnown RBP-0.16□□□□□ -2.44
VPS50-216ENST00000484954 BLMP54132 1417 aaPredicted RBP-0.16□□□□□ -2.44
VPS50-216ENST00000484954 ARHGAP31Q2M1Z3 1444 aa-0.16□□□□□ -2.44
VPS50-216ENST00000484954 TNXBP22105 4242 aa-0.16□□□□□ -2.44
VPS50-216ENST00000484954 FAM208BQ5VWN6 2430 aa-0.16□□□□□ -2.44
VPS50-216ENST00000484954 F8P00451 2351 aa-0.17□□□□□ -2.44
VPS50-216ENST00000484954 ANKRD11Q6UB99 2663 aaPredicted RBP-0.17□□□□□ -2.44
VPS50-216ENST00000484954 CSMD3Q7Z407 3707 aa-0.17□□□□□ -2.44
VPS50-216ENST00000484954 TRAV36DV7A0A075B6V5 113 aa-0.17□□□□□ -2.44
VPS50-216ENST00000484954 TEX49A0A1B0GTD5 131 aa-0.17□□□□□ -2.44
VPS50-216ENST00000484954 C9JAW5 83 aa-0.17□□□□□ -2.44
VPS50-216ENST00000484954 SPINK1P00995 79 aa-0.17□□□□□ -2.44
VPS50-216ENST00000484954 SCTP09683 121 aa-0.17□□□□□ -2.44
VPS50-216ENST00000484954 SLC25A6P12236 298 aa-0.17□□□□□ -2.44
VPS50-216ENST00000484954 HLA-DRB4P13762 266 aa-0.17□□□□□ -2.44
VPS50-216ENST00000484954 S100GP29377 79 aa-0.17□□□□□ -2.44
VPS50-216ENST00000484954 AKR1D1P51857 326 aa-0.17□□□□□ -2.44
VPS50-216ENST00000484954 POLR2JP52435 117 aaKnown RBP-0.17□□□□□ -2.44
VPS50-216ENST00000484954 PRKDCP78527 4128 aaKnown RBP-0.17□□□□□ -2.44
VPS50-216ENST00000484954 PLGLB1Q02325 96 aa-0.17□□□□□ -2.44
VPS50-216ENST00000484954 UNQ5815/PRO19632Q6UWF5 114 aa-0.17□□□□□ -2.44
VPS50-216ENST00000484954 NUP210Q8TEM1 1887 aaPredicted RBP-0.17□□□□□ -2.44
VPS50-216ENST00000484954 TMEM141Q96I45 108 aa-0.17□□□□□ -2.44
VPS50-216ENST00000484954 GINS2Q9Y248 185 aa-0.17□□□□□ -2.44
VPS50-216ENST00000484954 HECTD4Q9Y4D8 3996 aa-0.17□□□□□ -2.44
VPS50-216ENST00000484954 HLA-DRB4X5D2U9 266 aa-0.17□□□□□ -2.44
VPS50-216ENST00000484954 AKAP13Q12802 2813 aa-0.17□□□□□ -2.44
VPS50-216ENST00000484954 FAT1Q14517 4588 aa-0.17□□□□□ -2.44
VPS50-216ENST00000484954 CHD6Q8TD26 2715 aa-0.17□□□□□ -2.44
VPS50-216ENST00000484954 TRPM7Q96QT4 1865 aa-0.18□□□□□ -2.44
VPS50-216ENST00000484954 MYO7AQ13402 2215 aa-0.18□□□□□ -2.44
VPS50-216ENST00000484954 GVQW2A0A096LPI5 108 aaPredicted RBP-0.18□□□□□ -2.44
VPS50-216ENST00000484954 TRAV17A0A0B4J275 112 aa-0.18□□□□□ -2.44
VPS50-216ENST00000484954 PNMA8CA0A1B0GUJ8 204 aa-0.18□□□□□ -2.44
VPS50-216ENST00000484954 A0A1B0GX51 115 aa-0.18□□□□□ -2.44
VPS50-216ENST00000484954 J3KT08 172 aa-0.18□□□□□ -2.44
VPS50-216ENST00000484954 DPM2O94777 84 aa-0.18□□□□□ -2.44
VPS50-216ENST00000484954 PAEPP09466 180 aa-0.18□□□□□ -2.44
VPS50-216ENST00000484954 HIST1H1BP16401 226 aaKnown RBP-0.18□□□□□ -2.44
VPS50-216ENST00000484954 PSPHP78330 225 aa-0.18□□□□□ -2.44
VPS50-216ENST00000484954 OR8B8Q15620 311 aa-0.18□□□□□ -2.44
VPS50-216ENST00000484954 KRTAP6-1Q3LI64 71 aa-0.18□□□□□ -2.44
VPS50-216ENST00000484954 OR8I2Q8N0Y5 310 aa-0.18□□□□□ -2.44
VPS50-216ENST00000484954 PPDPFLQ8WWR9 84 aa-0.18□□□□□ -2.44
VPS50-216ENST00000484954 BET1LQ9NYM9 111 aa-0.18□□□□□ -2.44
VPS50-216ENST00000484954 HIGD1AQ9Y241 93 aa-0.18□□□□□ -2.44
VPS50-216ENST00000484954 LAMA5O15230 3695 aa-0.18□□□□□ -2.44
VPS50-216ENST00000484954 WDR97A6NE52 1622 aa-0.18□□□□□ -2.44
VPS50-216ENST00000484954 KDM6BO15054 1643 aa-0.18□□□□□ -2.44
VPS50-216ENST00000484954 ZCCHC11Q5TAX3 1644 aaKnown RBP-0.18□□□□□ -2.44
VPS50-216ENST00000484954 KIAA1549LQ6ZVL6 1849 aa-0.18□□□□□ -2.44
VPS50-216ENST00000484954 CADP27708 2225 aa-0.18□□□□□ -2.44
VPS50-216ENST00000484954 CACNA1CQ13936 2221 aa-0.18□□□□□ -2.44
VPS50-216ENST00000484954 TANC1Q9C0D5 1861 aa-0.18□□□□□ -2.44
VPS50-216ENST00000484954 LPAP08519 4548 aa-0.19□□□□□ -2.44
VPS50-216ENST00000484954 MGAM2Q2M2H8 2515 aa-0.19□□□□□ -2.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms