RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 TRAV4A0A0B4J268 109 aa6.95□□□□□ -1.3
SYNE1-224ENST00000478916 TRBV10-2A0A0K0K1G8 114 aa6.95□□□□□ -1.3
SYNE1-224ENST00000478916 FHL1Q13642 323 aa6.95□□□□□ -1.3
SYNE1-224ENST00000478916 SND1-IT1Q9HBX3 110 aa6.95□□□□□ -1.3
SYNE1-224ENST00000478916 IGHV4-4A0A075B6R2 117 aa6.95□□□□□ -1.3
SYNE1-224ENST00000478916 A4D1N5 150 aa6.95□□□□□ -1.3
SYNE1-224ENST00000478916 IGF2BP2-AS1Q96M15 143 aa6.95□□□□□ -1.3
SYNE1-224ENST00000478916 TMEM61Q8N0U2 210 aa6.95□□□□□ -1.3
SYNE1-224ENST00000478916 PLXNA4Q9HCM2 1894 aa6.95□□□□□ -1.3
SYNE1-224ENST00000478916 BUB3O43684 328 aa6.94□□□□□ -1.3
SYNE1-224ENST00000478916 HIGD2BQ4VC39 106 aa6.94□□□□□ -1.3
SYNE1-224ENST00000478916 HIGD1BQ9P298 99 aa6.94□□□□□ -1.3
SYNE1-224ENST00000478916 HOXB4P17483 251 aaPredicted RBP6.94□□□□□ -1.3
SYNE1-224ENST00000478916 COA6Q5JTJ3 125 aaKnown RBP6.94□□□□□ -1.3
SYNE1-224ENST00000478916 IGKV1-6A0A0C4DH72 117 aa6.94□□□□□ -1.3
SYNE1-224ENST00000478916 FAM240AA0A1B0GVK7 77 aa6.94□□□□□ -1.3
SYNE1-224ENST00000478916 FAM120AOSQ5T036 256 aa6.94□□□□□ -1.3
SYNE1-224ENST00000478916 WDR86Q86TI4 376 aa6.94□□□□□ -1.3
SYNE1-224ENST00000478916 IGFL2Q6UWQ7 119 aa6.94□□□□□ -1.3
SYNE1-224ENST00000478916 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.93□□□□□ -1.3
SYNE1-224ENST00000478916 IGKV2-29A2NJV5 120 aaPredicted RBP6.93□□□□□ -1.3
SYNE1-224ENST00000478916 H3BT86 120 aa6.93□□□□□ -1.3
SYNE1-224ENST00000478916 LGALS9O00182 355 aa6.93□□□□□ -1.3
SYNE1-224ENST00000478916 IGHV7-4-1A0A0J9YVY3 117 aa6.93□□□□□ -1.3
SYNE1-224ENST00000478916 FOXE3Q13461 319 aa6.93□□□□□ -1.3
SYNE1-224ENST00000478916 NUP210Q8TEM1 1887 aaPredicted RBP6.93□□□□□ -1.3
SYNE1-224ENST00000478916 ZNF503-AS2A6NEH8 195 aa6.93□□□□□ -1.3
SYNE1-224ENST00000478916 Q6ZUT4 128 aa6.93□□□□□ -1.3
SYNE1-224ENST00000478916 MPLKIPQ8TAP9 179 aa6.93□□□□□ -1.3
SYNE1-224ENST00000478916 DEFB112Q30KQ8 113 aa6.93□□□□□ -1.3
SYNE1-224ENST00000478916 RBAKDNA6NC62 111 aa6.92□□□□□ -1.3
SYNE1-224ENST00000478916 ASPHD1Q5U4P2 390 aa6.92□□□□□ -1.3
SYNE1-224ENST00000478916 TMEM256-PLSCR3K7ERE1 68 aa6.92□□□□□ -1.3
SYNE1-224ENST00000478916 SPTBN1Q01082 2364 aaKnown RBP6.92□□□□□ -1.3
SYNE1-224ENST00000478916 NDUFC2-KCTD14E9PQ53 114 aa6.92□□□□□ -1.3
SYNE1-224ENST00000478916 FXYD2P54710 66 aa6.92□□□□□ -1.3
SYNE1-224ENST00000478916 RPL18AQ02543 176 aaKnown RBP6.92□□□□□ -1.3
SYNE1-224ENST00000478916 LINC00643Q86TS7 51 aa6.92□□□□□ -1.3
SYNE1-224ENST00000478916 PLXNA2O75051 1894 aa6.92□□□□□ -1.3
SYNE1-224ENST00000478916 ANKRD39Q53RE8 183 aa6.92□□□□□ -1.3
SYNE1-224ENST00000478916 C9orf66Q5T8R8 295 aa6.92□□□□□ -1.3
SYNE1-224ENST00000478916 A0A096LPF7 62 aa6.91□□□□□ -1.3
SYNE1-224ENST00000478916 A0A0U1RQV1 116 aa6.91□□□□□ -1.3
SYNE1-224ENST00000478916 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP6.91□□□□□ -1.3
SYNE1-224ENST00000478916 NCKAP5O14513 1909 aa6.91□□□□□ -1.3
SYNE1-224ENST00000478916 IGKV2D-24A0A075B6R9 120 aa6.91□□□□□ -1.3
SYNE1-224ENST00000478916 C15orf65H3BRN8 121 aa6.91□□□□□ -1.3
SYNE1-224ENST00000478916 UQCRQO14949 82 aa6.91□□□□□ -1.3
SYNE1-224ENST00000478916 RNF183Q96D59 192 aa6.91□□□□□ -1.3
SYNE1-224ENST00000478916 ABCA4P78363 2273 aa6.91□□□□□ -1.3
SYNE1-224ENST00000478916 LYPD6BQ8NI32 183 aa6.91□□□□□ -1.3
SYNE1-224ENST00000478916 NLRC5Q86WI3 1866 aa6.91□□□□□ -1.3
SYNE1-224ENST00000478916 NDUFV3P56181 108 aaKnown RBP6.91□□□□□ -1.3
SYNE1-224ENST00000478916 HIST2H2BCQ6DN03 193 aa6.91□□□□□ -1.3
SYNE1-224ENST00000478916 TRBV12-3P01733 135 aa6.91□□□□□ -1.3
SYNE1-224ENST00000478916 ZNF503Q96F45 646 aa6.91□□□□□ -1.3
SYNE1-224ENST00000478916 LENEPQ9Y5L5 61 aa6.91□□□□□ -1.3
SYNE1-224ENST00000478916 IGKV1OR2-108A0A075B7D4 117 aa6.9□□□□□ -1.3
SYNE1-224ENST00000478916 FAM236DA0A1B0GTK5 79 aa6.9□□□□□ -1.3
SYNE1-224ENST00000478916 CCL24O00175 119 aa6.9□□□□□ -1.3
SYNE1-224ENST00000478916 IGHV4-59P01825 116 aa6.9□□□□□ -1.3
SYNE1-224ENST00000478916 FAM236CP0DP71 79 aa6.9□□□□□ -1.3
SYNE1-224ENST00000478916 C5orf38Q86SI9 138 aa6.9□□□□□ -1.3
SYNE1-224ENST00000478916 GNRH2O43555 120 aa6.9□□□□□ -1.3
SYNE1-224ENST00000478916 GRNP28799 593 aaKnown RBP6.9□□□□□ -1.3
SYNE1-224ENST00000478916 PDE6GP18545 87 aa6.9□□□□□ -1.3
SYNE1-224ENST00000478916 SPANXB1Q9NS25 103 aaPredicted RBP6.9□□□□□ -1.3
SYNE1-224ENST00000478916 MRPL36Q9P0J6 103 aaKnown RBP6.9□□□□□ -1.31
SYNE1-224ENST00000478916 K7ERS5 55 aa6.9□□□□□ -1.31
SYNE1-224ENST00000478916 CXCL5P42830 114 aa6.9□□□□□ -1.31
SYNE1-224ENST00000478916 TDRG1Q3Y452 100 aa6.9□□□□□ -1.31
SYNE1-224ENST00000478916 ARTNQ5T4W7 220 aa6.9□□□□□ -1.31
SYNE1-224ENST00000478916 C9orf47Q6ZRZ4 202 aa6.9□□□□□ -1.31
SYNE1-224ENST00000478916 WT1-ASQ06250 92 aa6.89□□□□□ -1.31
SYNE1-224ENST00000478916 TNRC6BQ9UPQ9 1833 aaKnown RBP6.89□□□□□ -1.31
SYNE1-224ENST00000478916 WT1P19544 449 aaPredicted RBP6.89□□□□□ -1.31
SYNE1-224ENST00000478916 UPK3BQ9BT76 320 aa6.89□□□□□ -1.31
SYNE1-224ENST00000478916 COX7A2LO14548 114 aa6.89□□□□□ -1.31
SYNE1-224ENST00000478916 TRAV23DV6A0A075B6W5 121 aa6.89□□□□□ -1.31
SYNE1-224ENST00000478916 DKK4Q9UBT3 224 aa6.89□□□□□ -1.31
SYNE1-224ENST00000478916 DAZ2Q13117 558 aaKnown RBP6.89□□□□□ -1.31
SYNE1-224ENST00000478916 DAZ4Q86SG3 579 aaKnown RBP6.89□□□□□ -1.31
SYNE1-224ENST00000478916 CLEC2BQ92478 149 aa6.89□□□□□ -1.31
SYNE1-224ENST00000478916 CAMK2N2Q96S95 79 aa6.89□□□□□ -1.31
SYNE1-224ENST00000478916 NOP10Q9NPE3 64 aaKnown RBP6.89□□□□□ -1.31
SYNE1-224ENST00000478916 DAZ3Q9NR90 486 aaKnown RBP6.89□□□□□ -1.31
SYNE1-224ENST00000478916 TPSG1Q9NRR2 321 aa6.89□□□□□ -1.31
SYNE1-224ENST00000478916 GPR179Q6PRD1 2367 aa6.89□□□□□ -1.31
SYNE1-224ENST00000478916 LECT2O14960 151 aa6.88□□□□□ -1.31
SYNE1-224ENST00000478916 PRR20EP86478 221 aa6.88□□□□□ -1.31
SYNE1-224ENST00000478916 PRR20CP86479 221 aa6.88□□□□□ -1.31
SYNE1-224ENST00000478916 PRR20DP86480 221 aa6.88□□□□□ -1.31
SYNE1-224ENST00000478916 PRR20BP86481 221 aa6.88□□□□□ -1.31
SYNE1-224ENST00000478916 PRR20AP86496 221 aa6.88□□□□□ -1.31
SYNE1-224ENST00000478916 RPL39LQ96EH5 51 aaKnown RBP6.88□□□□□ -1.31
SYNE1-224ENST00000478916 E9PLD3 99 aa6.88□□□□□ -1.31
SYNE1-224ENST00000478916 TIRAPP58753 221 aa6.88□□□□□ -1.31
SYNE1-224ENST00000478916 IGHV4-30-2A0A087WSY4 118 aa6.88□□□□□ -1.31
SYNE1-224ENST00000478916 IGHV4-61A0A0C4DH41 118 aa6.88□□□□□ -1.31
SYNE1-224ENST00000478916 DAZAP2Q15038 168 aaPredicted RBP6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms