RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 TTC9CQ8N5M4 171 aa3.88□□□□□ -1.79
CCDC39-204ENST00000476379 MRAPQ8TCY5 172 aa3.88□□□□□ -1.79
CCDC39-204ENST00000476379 TAX1BP3O14907 124 aa3.87□□□□□ -1.79
CCDC39-204ENST00000476379 PF4P02776 101 aa3.87□□□□□ -1.79
CCDC39-204ENST00000476379 RPL39P62891 51 aaKnown RBP3.87□□□□□ -1.79
CCDC39-204ENST00000476379 PAX8Q06710 450 aa3.87□□□□□ -1.79
CCDC39-204ENST00000476379 FAM104BQ5XKR9 115 aa3.87□□□□□ -1.79
CCDC39-204ENST00000476379 ADAMTSL5Q6ZMM2 481 aa3.87□□□□□ -1.79
CCDC39-204ENST00000476379 CCL19Q99731 98 aa3.87□□□□□ -1.79
CCDC39-204ENST00000476379 AGPAT4-IT1Q9H0P7 198 aa3.87□□□□□ -1.79
CCDC39-204ENST00000476379 ST20Q9HBF5 79 aa3.87□□□□□ -1.79
CCDC39-204ENST00000476379 PGPEP1Q9NXJ5 209 aa3.87□□□□□ -1.79
CCDC39-204ENST00000476379 TEX48A0A1B0GUV7 120 aa3.87□□□□□ -1.79
CCDC39-204ENST00000476379 SLC25A16P16260 332 aa3.87□□□□□ -1.79
CCDC39-204ENST00000476379 CT83Q5H943 113 aa3.87□□□□□ -1.79
CCDC39-204ENST00000476379 UNQ9165/PRO28630Q6UXU0 137 aa3.87□□□□□ -1.79
CCDC39-204ENST00000476379 DAND5Q8N907 189 aa3.87□□□□□ -1.79
CCDC39-204ENST00000476379 URB1-AS1Q96HZ7 61 aa3.87□□□□□ -1.79
CCDC39-204ENST00000476379 CSTL1Q9H114 145 aa3.87□□□□□ -1.79
CCDC39-204ENST00000476379 TEX22C9J3V5 150 aa3.87□□□□□ -1.79
CCDC39-204ENST00000476379 MRPL52Q86TS9 123 aaKnown RBP3.87□□□□□ -1.79
CCDC39-204ENST00000476379 EEF1AKMT3Q96AZ1 226 aa3.87□□□□□ -1.79
CCDC39-204ENST00000476379 MRPL27Q9P0M9 148 aaKnown RBP3.87□□□□□ -1.79
CCDC39-204ENST00000476379 TSSC4Q9Y5U2 329 aaPredicted RBP3.87□□□□□ -1.79
CCDC39-204ENST00000476379 H7C1H1 209 aa3.87□□□□□ -1.79
CCDC39-204ENST00000476379 DPM2O94777 84 aa3.87□□□□□ -1.79
CCDC39-204ENST00000476379 CGB3P0DN86 165 aa3.87□□□□□ -1.79
CCDC39-204ENST00000476379 CGB7P0DN87 165 aa3.87□□□□□ -1.79
CCDC39-204ENST00000476379 WFDC2Q14508 124 aa3.87□□□□□ -1.79
CCDC39-204ENST00000476379 CEMP1Q6PRD7 247 aaPredicted RBP3.87□□□□□ -1.79
CCDC39-204ENST00000476379 C8orf86Q6ZUL3 223 aa3.87□□□□□ -1.79
CCDC39-204ENST00000476379 RAI1Q7Z5J4 1906 aaPredicted RBP3.86□□□□□ -1.79
CCDC39-204ENST00000476379 TRAV9-1A0A075B6T8 112 aa3.86□□□□□ -1.79
CCDC39-204ENST00000476379 IGHV4-30-2A0A087WSY4 118 aa3.86□□□□□ -1.79
CCDC39-204ENST00000476379 PRSS29PA6NIE9 313 aa3.86□□□□□ -1.79
CCDC39-204ENST00000476379 I3L2K1 104 aa3.86□□□□□ -1.79
CCDC39-204ENST00000476379 IGHV4-38-2P0DP08 117 aa3.86□□□□□ -1.79
CCDC39-204ENST00000476379 ASIPP42127 132 aa3.86□□□□□ -1.79
CCDC39-204ENST00000476379 GATA4P43694 442 aa3.86□□□□□ -1.79
CCDC39-204ENST00000476379 CHCHD1Q96BP2 118 aaKnown RBP3.86□□□□□ -1.79
CCDC39-204ENST00000476379 SMIM12Q96EX1 92 aa3.86□□□□□ -1.79
CCDC39-204ENST00000476379 RHPN1-AS1Q9BWJ2 59 aa3.86□□□□□ -1.79
CCDC39-204ENST00000476379 CHTOPQ9Y3Y2 248 aaKnown RBP3.86□□□□□ -1.79
CCDC39-204ENST00000476379 LINC01549A6NIU2 74 aa3.86□□□□□ -1.79
CCDC39-204ENST00000476379 PVRIGQ6DKI7 326 aa3.86□□□□□ -1.79
CCDC39-204ENST00000476379 Q6ZS46 218 aa3.86□□□□□ -1.79
CCDC39-204ENST00000476379 ATP5L2Q7Z4Y8 100 aa3.86□□□□□ -1.79
CCDC39-204ENST00000476379 Q8N976 141 aa3.86□□□□□ -1.79
CCDC39-204ENST00000476379 OR4X2Q8NGF9 303 aa3.86□□□□□ -1.79
CCDC39-204ENST00000476379 TRRAPQ9Y4A5 3859 aa3.86□□□□□ -1.79
CCDC39-204ENST00000476379 TRAV41A0A0B4J266 112 aa3.86□□□□□ -1.79
CCDC39-204ENST00000476379 FNDC10F2Z333 226 aa3.86□□□□□ -1.79
CCDC39-204ENST00000476379 CTSGP08311 255 aa3.86□□□□□ -1.79
CCDC39-204ENST00000476379 LGALS3P17931 250 aaKnown RBP3.86□□□□□ -1.79
CCDC39-204ENST00000476379 ZNF876PQ49A33 203 aa3.85□□□□□ -1.79
CCDC39-204ENST00000476379 H3BRN7 92 aa3.85□□□□□ -1.79
CCDC39-204ENST00000476379 P0DMU3 169 aa3.85□□□□□ -1.79
CCDC39-204ENST00000476379 FAM231AP0DMU4 169 aa3.85□□□□□ -1.79
CCDC39-204ENST00000476379 FAM231CP0DMU5 169 aa3.85□□□□□ -1.79
CCDC39-204ENST00000476379 ZNF415Q09FC8 603 aa3.85□□□□□ -1.79
CCDC39-204ENST00000476379 DYNLRB2Q8TF09 96 aa3.85□□□□□ -1.79
CCDC39-204ENST00000476379 Q96MF0 132 aa3.85□□□□□ -1.79
CCDC39-204ENST00000476379 KIR2DL4Q99706 377 aa3.85□□□□□ -1.79
CCDC39-204ENST00000476379 TP53TG1Q9Y2A0 90 aa3.85□□□□□ -1.79
CCDC39-204ENST00000476379 MRPS16Q9Y3D3 137 aaKnown RBP3.85□□□□□ -1.79
CCDC39-204ENST00000476379 TRAV30A0A087WSZ9 112 aa3.85□□□□□ -1.79
CCDC39-204ENST00000476379 A0A096LPF7 62 aa3.85□□□□□ -1.79
CCDC39-204ENST00000476379 IGHV7-81A0A0B4J1V7 117 aa3.85□□□□□ -1.79
CCDC39-204ENST00000476379 COX8AP10176 69 aa3.85□□□□□ -1.79
CCDC39-204ENST00000476379 LAGE3Q14657 143 aa3.85□□□□□ -1.79
CCDC39-204ENST00000476379 NUP37Q8NFH4 326 aa3.85□□□□□ -1.79
CCDC39-204ENST00000476379 FANCD2OSQ96PS1 177 aa3.85□□□□□ -1.79
CCDC39-204ENST00000476379 PKD1L1Q8TDX9 2849 aa3.85□□□□□ -1.79
CCDC39-204ENST00000476379 IGHV4-61A0A0C4DH41 118 aa3.85□□□□□ -1.79
CCDC39-204ENST00000476379 DUSP14O95147 198 aaKnown RBP3.85□□□□□ -1.79
CCDC39-204ENST00000476379 SUMO2P61956 95 aaKnown RBP3.85□□□□□ -1.79
CCDC39-204ENST00000476379 C2orf66Q6UXQ4 117 aa3.85□□□□□ -1.79
CCDC39-204ENST00000476379 ZNF562Q6V9R5 426 aa3.85□□□□□ -1.79
CCDC39-204ENST00000476379 LY96Q9Y6Y9 160 aa3.85□□□□□ -1.79
CCDC39-204ENST00000476379 TRAV8-2A0A0B4J237 113 aa3.84□□□□□ -1.79
CCDC39-204ENST00000476379 CTRLP40313 264 aa3.84□□□□□ -1.79
CCDC39-204ENST00000476379 HSD52Q0P140 79 aa3.84□□□□□ -1.79
CCDC39-204ENST00000476379 MRAP2Q96G30 205 aa3.84□□□□□ -1.79
CCDC39-204ENST00000476379 NPFFR1Q9GZQ6 430 aa3.84□□□□□ -1.79
CCDC39-204ENST00000476379 XCL2Q9UBD3 114 aa3.84□□□□□ -1.79
CCDC39-204ENST00000476379 TRBV25-1A0A075B6N4 114 aa3.84□□□□□ -1.79
CCDC39-204ENST00000476379 TRAV13-1A0A0B4J241 112 aa3.84□□□□□ -1.79
CCDC39-204ENST00000476379 NPFFO15130 113 aa3.84□□□□□ -1.79
CCDC39-204ENST00000476379 IGLV1-47P01700 117 aa3.84□□□□□ -1.79
CCDC39-204ENST00000476379 INSL3P51460 131 aa3.84□□□□□ -1.79
CCDC39-204ENST00000476379 PEMTQ9UBM1 199 aa3.84□□□□□ -1.79
CCDC39-204ENST00000476379 A8MZ25 164 aa3.84□□□□□ -1.8
CCDC39-204ENST00000476379 CD5LO43866 347 aa3.84□□□□□ -1.8
CCDC39-204ENST00000476379 HTN3P15516 51 aa3.84□□□□□ -1.8
CCDC39-204ENST00000476379 RAB9AP51151 201 aa3.84□□□□□ -1.8
CCDC39-204ENST00000476379 PAX2Q02962 417 aa3.84□□□□□ -1.8
CCDC39-204ENST00000476379 POU2AF1Q16633 256 aa3.84□□□□□ -1.8
CCDC39-204ENST00000476379 MEIG1Q5JSS6 88 aa3.84□□□□□ -1.8
CCDC39-204ENST00000476379 THAP8Q8NA92 274 aa3.84□□□□□ -1.8
CCDC39-204ENST00000476379 PRADC1Q9BSG0 188 aa3.84□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 122 ms