RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 CFAP126Q5VTH2 177 aa13.3□□□□□ -0.28
COL9A3-210ENST00000472880 FRZBQ92765 325 aa13.3□□□□□ -0.28
COL9A3-210ENST00000472880 C11orf21Q9P2W6 132 aa13.3□□□□□ -0.28
COL9A3-210ENST00000472880 IGHV3-73A0A0B4J1V6 119 aa13.29□□□□□ -0.28
COL9A3-210ENST00000472880 TRBV6-4A0A1B0GX49 114 aa13.29□□□□□ -0.28
COL9A3-210ENST00000472880 FLI1Q01543 452 aaPredicted RBP13.29□□□□□ -0.28
COL9A3-210ENST00000472880 SMUG1Q53HV7 270 aa13.29□□□□□ -0.28
COL9A3-210ENST00000472880 TMEM75Q8N9X5 138 aa13.29□□□□□ -0.28
COL9A3-210ENST00000472880 C9orf85Q96MD7 179 aa13.29□□□□□ -0.28
COL9A3-210ENST00000472880 A0A0D9SG52 128 aa13.28□□□□□ -0.28
COL9A3-210ENST00000472880 GGTLC3B5MD39 225 aa13.28□□□□□ -0.28
COL9A3-210ENST00000472880 SUMO1P63165 101 aaKnown RBP13.28□□□□□ -0.28
COL9A3-210ENST00000472880 Q5VSD8 79 aa13.28□□□□□ -0.28
COL9A3-210ENST00000472880 DPPA3Q6W0C5 159 aa13.28□□□□□ -0.28
COL9A3-210ENST00000472880 PRNTQ86SH4 94 aa13.28□□□□□ -0.28
COL9A3-210ENST00000472880 CYB561D1Q8N8Q1 229 aa13.28□□□□□ -0.28
COL9A3-210ENST00000472880 IGLV5-52A0A0A0MRZ9 124 aa13.27□□□□□ -0.29
COL9A3-210ENST00000472880 IBA57-AS1B1ANH7 110 aa13.27□□□□□ -0.29
COL9A3-210ENST00000472880 BCL2L11O43521 198 aa13.27□□□□□ -0.29
COL9A3-210ENST00000472880 INAFM2P0DMQ5 153 aa13.27□□□□□ -0.29
COL9A3-210ENST00000472880 ZNF506Q5JVG8 444 aa13.27□□□□□ -0.29
COL9A3-210ENST00000472880 Q9HAA7 133 aa13.27□□□□□ -0.29
COL9A3-210ENST00000472880 EPDR1Q9UM22 224 aa13.27□□□□□ -0.29
COL9A3-210ENST00000472880 KANTRA0A1W2PQU2 76 aa13.26□□□□□ -0.29
COL9A3-210ENST00000472880 A0A1W2PRE2 83 aa13.26□□□□□ -0.29
COL9A3-210ENST00000472880 IGLV2-11P01706 119 aa13.26□□□□□ -0.29
COL9A3-210ENST00000472880 MGST1P10620 155 aaKnown RBP13.26□□□□□ -0.29
COL9A3-210ENST00000472880 LELP1Q5T871 98 aa13.26□□□□□ -0.29
COL9A3-210ENST00000472880 NTN5Q8WTR8 489 aaPredicted RBP13.26□□□□□ -0.29
COL9A3-210ENST00000472880 PGPEP1LA6NFU8 196 aa13.25□□□□□ -0.29
COL9A3-210ENST00000472880 IGHV3-30P01768 117 aa13.25□□□□□ -0.29
COL9A3-210ENST00000472880 IGHV3-33P01772 117 aa13.25□□□□□ -0.29
COL9A3-210ENST00000472880 IGHV3-30-3P0DP02 117 aa13.25□□□□□ -0.29
COL9A3-210ENST00000472880 IGHV3-30-5P0DP03 117 aa13.25□□□□□ -0.29
COL9A3-210ENST00000472880 FGF8P55075 233 aaPredicted RBP13.25□□□□□ -0.29
COL9A3-210ENST00000472880 SAPCD1Q5SSQ6 148 aa13.25□□□□□ -0.29
COL9A3-210ENST00000472880 Q6ZNX1 250 aa13.25□□□□□ -0.29
COL9A3-210ENST00000472880 PTH2Q96A98 100 aa13.25□□□□□ -0.29
COL9A3-210ENST00000472880 ZNF471Q9BX82 626 aaPredicted RBP13.25□□□□□ -0.29
COL9A3-210ENST00000472880 MAP1LC3B2A6NCE7 125 aa13.24□□□□□ -0.29
COL9A3-210ENST00000472880 LRCOL1A6NCL2 159 aa13.24□□□□□ -0.29
COL9A3-210ENST00000472880 SEC11BP0C7V7 166 aa13.24□□□□□ -0.29
COL9A3-210ENST00000472880 RNASE3P12724 160 aaKnown RBP13.24□□□□□ -0.29
COL9A3-210ENST00000472880 ATP6V0E2Q8NHE4 81 aa13.24□□□□□ -0.29
COL9A3-210ENST00000472880 MAP1LC3BQ9GZQ8 125 aa13.24□□□□□ -0.29
COL9A3-210ENST00000472880 GTSF1LQ9H1H1 148 aa13.24□□□□□ -0.29
COL9A3-210ENST00000472880 S100A4P26447 101 aaKnown RBP13.23□□□□□ -0.29
COL9A3-210ENST00000472880 UBE2G2P60604 165 aa13.23□□□□□ -0.29
COL9A3-210ENST00000472880 PFDN1O60925 122 aa13.22□□□□□ -0.29
COL9A3-210ENST00000472880 FHITP49789 147 aa13.22□□□□□ -0.29
COL9A3-210ENST00000472880 TMUB2Q71RG4 321 aa13.22□□□□□ -0.29
COL9A3-210ENST00000472880 TCTE3Q8IZS6 198 aa13.22□□□□□ -0.29
COL9A3-210ENST00000472880 Q8N814 137 aa13.22□□□□□ -0.29
COL9A3-210ENST00000472880 PARLQ9H300 379 aa13.22□□□□□ -0.29
COL9A3-210ENST00000472880 FAM74A7A6NL05 159 aa13.21□□□□□ -0.29
COL9A3-210ENST00000472880 A8MWV9 139 aa13.21□□□□□ -0.29
COL9A3-210ENST00000472880 UMAD1C9J7I0 102 aa13.21□□□□□ -0.29
COL9A3-210ENST00000472880 IFNA7P01567 189 aa13.21□□□□□ -0.29
COL9A3-210ENST00000472880 SMR3BP02814 79 aaPredicted RBP13.21□□□□□ -0.29
COL9A3-210ENST00000472880 EIF5AP63241 154 aaKnown RBP13.21□□□□□ -0.29
COL9A3-210ENST00000472880 LAGE3Q14657 143 aa13.21□□□□□ -0.29
COL9A3-210ENST00000472880 TMEM70Q9BUB7 260 aa13.21□□□□□ -0.29
COL9A3-210ENST00000472880 ARL2-SNX15V9GYD0 113 aa13.21□□□□□ -0.29
COL9A3-210ENST00000472880 TRAV34A0A0B4J273 112 aa13.2□□□□□ -0.3
COL9A3-210ENST00000472880 ASIPP42127 132 aa13.2□□□□□ -0.3
COL9A3-210ENST00000472880 HAMPP81172 84 aa13.2□□□□□ -0.3
COL9A3-210ENST00000472880 LGALSLQ3ZCW2 172 aaPredicted RBP13.2□□□□□ -0.3
COL9A3-210ENST00000472880 ZFP2Q6ZN57 461 aa13.2□□□□□ -0.3
COL9A3-210ENST00000472880 STOML3Q8TAV4 291 aa13.2□□□□□ -0.3
COL9A3-210ENST00000472880 LINC00479Q96M42 142 aa13.2□□□□□ -0.3
COL9A3-210ENST00000472880 NKX6-2Q9C056 277 aaPredicted RBP13.2□□□□□ -0.3
COL9A3-210ENST00000472880 FAT1Q14517 4588 aa13.2□□□□□ -0.3
COL9A3-210ENST00000472880 IGKV3D-20A0A0C4DH25 116 aa13.19□□□□□ -0.3
COL9A3-210ENST00000472880 GAGE12JA6NER3 117 aa13.19□□□□□ -0.3
COL9A3-210ENST00000472880 TPT1P13693 172 aaKnown RBP13.19□□□□□ -0.3
COL9A3-210ENST00000472880 GAGE1Q13065 139 aa13.19□□□□□ -0.3
COL9A3-210ENST00000472880 GAGE4Q13068 117 aa13.19□□□□□ -0.3
COL9A3-210ENST00000472880 GAGE5Q13069 117 aa13.19□□□□□ -0.3
COL9A3-210ENST00000472880 GAGE13Q4V321 117 aa13.19□□□□□ -0.3
COL9A3-210ENST00000472880 PIK3CD-AS1Q5SR53 167 aa13.19□□□□□ -0.3
COL9A3-210ENST00000472880 FAM213BQ8TBF2 198 aa13.19□□□□□ -0.3
COL9A3-210ENST00000472880 TM2D2Q9BX73 214 aa13.19□□□□□ -0.3
COL9A3-210ENST00000472880 FABP5P3A8MUU1 101 aa13.18□□□□□ -0.3
COL9A3-210ENST00000472880 FAM229AH3BQW9 127 aa13.18□□□□□ -0.3
COL9A3-210ENST00000472880 PEX7O00628 323 aa13.18□□□□□ -0.3
COL9A3-210ENST00000472880 Q86TA4 180 aa13.18□□□□□ -0.3
COL9A3-210ENST00000472880 Q6ZSN1 163 aa13.17□□□□□ -0.3
COL9A3-210ENST00000472880 MBD3L1Q8WWY6 194 aa13.17□□□□□ -0.3
COL9A3-210ENST00000472880 HIST1H2BAQ96A08 127 aa13.17□□□□□ -0.3
COL9A3-210ENST00000472880 B4DEV8 164 aa13.16□□□□□ -0.3
COL9A3-210ENST00000472880 H3BVH4 76 aa13.16□□□□□ -0.3
COL9A3-210ENST00000472880 C1QBP02746 253 aa13.16□□□□□ -0.3
COL9A3-210ENST00000472880 LINC00694P0DN24 101 aa13.16□□□□□ -0.3
COL9A3-210ENST00000472880 Q8N3U1 123 aa13.16□□□□□ -0.3
COL9A3-210ENST00000472880 SFT2D1Q8WV19 159 aa13.16□□□□□ -0.3
COL9A3-210ENST00000472880 IL36BQ9NZH7 164 aa13.16□□□□□ -0.3
COL9A3-210ENST00000472880 hCG_2014768A0A024R1R8 64 aa13.15□□□□□ -0.3
COL9A3-210ENST00000472880 SYT8Q8NBV8 401 aa13.15□□□□□ -0.3
COL9A3-210ENST00000472880 A0A087WWC5 75 aa13.14□□□□□ -0.31
COL9A3-210ENST00000472880 TRAV8-3A0A0A6YYJ7 113 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms