RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 ERVFC1-1P60608 527 aa10.66□□□□□ -0.7
CCDC88B-205ENST00000472524 SH2D6Q7Z4S9 175 aa10.66□□□□□ -0.7
CCDC88B-205ENST00000472524 Q86TA4 180 aa10.66□□□□□ -0.7
CCDC88B-205ENST00000472524 PRADC1Q9BSG0 188 aa10.66□□□□□ -0.7
CCDC88B-205ENST00000472524 MAP1LC3BQ9GZQ8 125 aa10.66□□□□□ -0.7
CCDC88B-205ENST00000472524 IGKV3D-20A0A0C4DH25 116 aa10.65□□□□□ -0.7
CCDC88B-205ENST00000472524 EREGO14944 169 aa10.65□□□□□ -0.7
CCDC88B-205ENST00000472524 FUSP35637 526 aaKnown RBP eCLIP10.65□□□□□ -0.7
CCDC88B-205ENST00000472524 RHOHQ15669 191 aa10.65□□□□□ -0.7
CCDC88B-205ENST00000472524 MSRB1Q9NZV6 116 aa10.65□□□□□ -0.7
CCDC88B-205ENST00000472524 FABP5P3A8MUU1 101 aa10.64□□□□□ -0.71
CCDC88B-205ENST00000472524 CIDEAO60543 219 aa10.64□□□□□ -0.71
CCDC88B-205ENST00000472524 CRYGDP07320 174 aa10.64□□□□□ -0.71
CCDC88B-205ENST00000472524 HIST1H2BAQ96A08 127 aa10.64□□□□□ -0.71
CCDC88B-205ENST00000472524 NKX6-2Q9C056 277 aaPredicted RBP10.64□□□□□ -0.71
CCDC88B-205ENST00000472524 HERC1Q15751 4861 aa10.63□□□□□ -0.71
CCDC88B-205ENST00000472524 TRBV6-4A0A1B0GX49 114 aa10.63□□□□□ -0.71
CCDC88B-205ENST00000472524 ASIPP42127 132 aa10.63□□□□□ -0.71
CCDC88B-205ENST00000472524 LGALSLQ3ZCW2 172 aaPredicted RBP10.63□□□□□ -0.71
CCDC88B-205ENST00000472524 PTH2Q96A98 100 aa10.63□□□□□ -0.71
CCDC88B-205ENST00000472524 ZC2HC1AQ96GY0 325 aa10.63□□□□□ -0.71
CCDC88B-205ENST00000472524 IGHV3-38A0A0C4DH36 116 aa10.62□□□□□ -0.71
CCDC88B-205ENST00000472524 B4DEV8 164 aa10.62□□□□□ -0.71
CCDC88B-205ENST00000472524 H3BVH4 76 aa10.62□□□□□ -0.71
CCDC88B-205ENST00000472524 K7EP13 123 aa10.62□□□□□ -0.71
CCDC88B-205ENST00000472524 M0R036 132 aa10.62□□□□□ -0.71
CCDC88B-205ENST00000472524 FHITP49789 147 aa10.62□□□□□ -0.71
CCDC88B-205ENST00000472524 TIRAPP58753 221 aa10.62□□□□□ -0.71
CCDC88B-205ENST00000472524 UBE2G1P62253 170 aa10.62□□□□□ -0.71
CCDC88B-205ENST00000472524 OR10J3Q5JRS4 329 aa10.62□□□□□ -0.71
CCDC88B-205ENST00000472524 CST9LP1Q5W188 147 aa10.62□□□□□ -0.71
CCDC88B-205ENST00000472524 C10orf126Q8N4M7 172 aa10.62□□□□□ -0.71
CCDC88B-205ENST00000472524 STOML3Q8TAV4 291 aa10.62□□□□□ -0.71
CCDC88B-205ENST00000472524 PARLQ9H300 379 aa10.62□□□□□ -0.71
CCDC88B-205ENST00000472524 TRAV8-6A0A0B4J262 113 aa10.61□□□□□ -0.71
CCDC88B-205ENST00000472524 SH2D1AO60880 128 aa10.61□□□□□ -0.71
CCDC88B-205ENST00000472524 MGST1P10620 155 aaKnown RBP10.61□□□□□ -0.71
CCDC88B-205ENST00000472524 CRIP1P50238 77 aa10.61□□□□□ -0.71
CCDC88B-205ENST00000472524 KCNRGQ8N5I3 272 aa10.61□□□□□ -0.71
CCDC88B-205ENST00000472524 FMC1Q96HJ9 113 aa10.61□□□□□ -0.71
CCDC88B-205ENST00000472524 A0A087WTM6 91 aa10.6□□□□□ -0.71
CCDC88B-205ENST00000472524 A0A1B0GV50 99 aa10.6□□□□□ -0.71
CCDC88B-205ENST00000472524 GRIFINA4D1Z8 144 aa10.6□□□□□ -0.71
CCDC88B-205ENST00000472524 A8MWV9 139 aa10.6□□□□□ -0.71
CCDC88B-205ENST00000472524 ZNF345Q14585 488 aa10.6□□□□□ -0.71
CCDC88B-205ENST00000472524 Q6ZSN1 163 aa10.6□□□□□ -0.71
CCDC88B-205ENST00000472524 ATP6V0E2Q8NHE4 81 aa10.6□□□□□ -0.71
CCDC88B-205ENST00000472524 FAM213BQ8TBF2 198 aa10.6□□□□□ -0.71
CCDC88B-205ENST00000472524 JPT2Q9H910 190 aa10.6□□□□□ -0.71
CCDC88B-205ENST00000472524 PGPEP1Q9NXJ5 209 aa10.6□□□□□ -0.71
CCDC88B-205ENST00000472524 IL36BQ9NZH7 164 aa10.6□□□□□ -0.71
CCDC88B-205ENST00000472524 ZFP30Q9Y2G7 519 aa10.6□□□□□ -0.71
CCDC88B-205ENST00000472524 GAGE12JA6NER3 117 aa10.59□□□□□ -0.71
CCDC88B-205ENST00000472524 KRBOX1C9JBD0 128 aa10.59□□□□□ -0.71
CCDC88B-205ENST00000472524 AKR1C3P42330 323 aa10.59□□□□□ -0.71
CCDC88B-205ENST00000472524 GAGE1Q13065 139 aa10.59□□□□□ -0.71
CCDC88B-205ENST00000472524 GAGE4Q13068 117 aa10.59□□□□□ -0.71
CCDC88B-205ENST00000472524 GAGE5Q13069 117 aa10.59□□□□□ -0.71
CCDC88B-205ENST00000472524 GAGE13Q4V321 117 aa10.59□□□□□ -0.71
CCDC88B-205ENST00000472524 LINC01556Q5JQF7 62 aa10.59□□□□□ -0.71
CCDC88B-205ENST00000472524 FAM162BQ5T6X4 162 aa10.59□□□□□ -0.71
CCDC88B-205ENST00000472524 LELP1Q5T871 98 aa10.59□□□□□ -0.71
CCDC88B-205ENST00000472524 OR11H4Q8NGC9 324 aa10.59□□□□□ -0.71
CCDC88B-205ENST00000472524 ZNF471Q9BX82 626 aaPredicted RBP10.59□□□□□ -0.71
CCDC88B-205ENST00000472524 TMSB15BA0A087X1C1 80 aa10.58□□□□□ -0.72
CCDC88B-205ENST00000472524 PAGE4O60829 102 aa10.58□□□□□ -0.72
CCDC88B-205ENST00000472524 IGHV3-30P01768 117 aa10.58□□□□□ -0.72
CCDC88B-205ENST00000472524 IGHV3-33P01772 117 aa10.58□□□□□ -0.72
CCDC88B-205ENST00000472524 ARMS2P0C7Q2 107 aa10.58□□□□□ -0.72
CCDC88B-205ENST00000472524 IGHV3-30-3P0DP02 117 aa10.58□□□□□ -0.72
CCDC88B-205ENST00000472524 IGHV3-30-5P0DP03 117 aa10.58□□□□□ -0.72
CCDC88B-205ENST00000472524 PIK3CD-AS1Q5SR53 167 aa10.58□□□□□ -0.72
CCDC88B-205ENST00000472524 DMRTA1Q5VZB9 504 aa10.58□□□□□ -0.72
CCDC88B-205ENST00000472524 ZFP2Q6ZN57 461 aa10.58□□□□□ -0.72
CCDC88B-205ENST00000472524 SYT8Q8NBV8 401 aa10.58□□□□□ -0.72
CCDC88B-205ENST00000472524 SFT2D1Q8WV19 159 aa10.58□□□□□ -0.72
CCDC88B-205ENST00000472524 SAMD10Q9BYL1 202 aa10.58□□□□□ -0.72
CCDC88B-205ENST00000472524 GTSF1LQ9H1H1 148 aa10.58□□□□□ -0.72
CCDC88B-205ENST00000472524 Q9HAA7 133 aa10.58□□□□□ -0.72
CCDC88B-205ENST00000472524 KANTRA0A1W2PQU2 76 aa10.57□□□□□ -0.72
CCDC88B-205ENST00000472524 EPM2AB3EWF7 344 aa10.57□□□□□ -0.72
CCDC88B-205ENST00000472524 PSCAO43653 123 aa10.57□□□□□ -0.72
CCDC88B-205ENST00000472524 SEC11BP0C7V7 166 aa10.57□□□□□ -0.72
CCDC88B-205ENST00000472524 CDPF1Q6NVV7 123 aa10.57□□□□□ -0.72
CCDC88B-205ENST00000472524 COX8CQ7Z4L0 72 aa10.57□□□□□ -0.72
CCDC88B-205ENST00000472524 TCEAL7Q9BRU2 100 aa10.57□□□□□ -0.72
CCDC88B-205ENST00000472524 A0A0D9SG52 128 aa10.56□□□□□ -0.72
CCDC88B-205ENST00000472524 TRBV6-1A0A0K0K1D8 114 aa10.56□□□□□ -0.72
CCDC88B-205ENST00000472524 HMSDA8MTL9 139 aa10.56□□□□□ -0.72
CCDC88B-205ENST00000472524 BCL2L11O43521 198 aa10.56□□□□□ -0.72
CCDC88B-205ENST00000472524 LTAP01374 205 aa10.56□□□□□ -0.72
CCDC88B-205ENST00000472524 ZNF674Q2M3X9 581 aa10.56□□□□□ -0.72
CCDC88B-205ENST00000472524 DNLZQ5SXM8 178 aa10.56□□□□□ -0.72
CCDC88B-205ENST00000472524 FAM74A4Q5TZK3 123 aa10.56□□□□□ -0.72
CCDC88B-205ENST00000472524 C14orf178Q8N769 122 aaPredicted RBP10.56□□□□□ -0.72
CCDC88B-205ENST00000472524 PHLDA3Q9Y5J5 127 aa10.56□□□□□ -0.72
CCDC88B-205ENST00000472524 FAT1Q14517 4588 aa10.56□□□□□ -0.72
CCDC88B-205ENST00000472524 IBA57-AS1B1ANH7 110 aa10.55□□□□□ -0.72
CCDC88B-205ENST00000472524 UMAD1C9J7I0 102 aa10.55□□□□□ -0.72
CCDC88B-205ENST00000472524 M0R381 172 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms