RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044		A0A0C4DFX4	3053 aa		0.21	□□□□□ -2.38
PTCD3-209	ENST00000472044	UBR5	O95071	2799 aa	Predicted RBP	0.21	□□□□□ -2.38
PTCD3-209	ENST00000472044	CENPE	Q02224	2701 aa		0.21	□□□□□ -2.38
PTCD3-209	ENST00000472044	PRKDC	P78527	4128 aa	Known RBP	0.21	□□□□□ -2.38
PTCD3-209	ENST00000472044	EFCAB10	A6NFE3	127 aa		0.21	□□□□□ -2.38
PTCD3-209	ENST00000472044	SMIM24	O75264	130 aa		0.21	□□□□□ -2.38
PTCD3-209	ENST00000472044	CD3D	P04234	171 aa		0.21	□□□□□ -2.38
PTCD3-209	ENST00000472044	CCK	P06307	115 aa		0.21	□□□□□ -2.38
PTCD3-209	ENST00000472044	SCT	P09683	121 aa		0.21	□□□□□ -2.38
PTCD3-209	ENST00000472044	POLR2J	P52435	117 aa	Known RBP	0.21	□□□□□ -2.38
PTCD3-209	ENST00000472044	SARNP	P82979	210 aa	Known RBP	0.21	□□□□□ -2.38
PTCD3-209	ENST00000472044	IQCJ	Q1A5X6	159 aa		0.21	□□□□□ -2.38
PTCD3-209	ENST00000472044	TMEM91	Q6ZNR0	172 aa		0.21	□□□□□ -2.38
PTCD3-209	ENST00000472044	PPDPFL	Q8WWR9	84 aa		0.21	□□□□□ -2.38
PTCD3-209	ENST00000472044	SLC35B3	Q9H1N7	401 aa		0.21	□□□□□ -2.38
PTCD3-209	ENST00000472044	CACNA1H	O95180	2353 aa		0.21	□□□□□ -2.38
PTCD3-209	ENST00000472044	FLNA	P21333	2647 aa	Known RBP	0.21	□□□□□ -2.38
PTCD3-209	ENST00000472044	CASZ1	Q86V15	1759 aa		0.21	□□□□□ -2.38
PTCD3-209	ENST00000472044	EPG5	Q9HCE0	2579 aa		0.21	□□□□□ -2.38
PTCD3-209	ENST00000472044	NF1	P21359	2839 aa		0.21	□□□□□ -2.38
PTCD3-209	ENST00000472044	WDR7	Q9Y4E6	1490 aa		0.21	□□□□□ -2.38
PTCD3-209	ENST00000472044	ITPR1	Q14643	2758 aa		0.21	□□□□□ -2.38
PTCD3-209	ENST00000472044	MED13L	Q71F56	2210 aa		0.21	□□□□□ -2.38
PTCD3-209	ENST00000472044	SMG6	Q86US8	1419 aa	Known RBP	0.21	□□□□□ -2.38
PTCD3-209	ENST00000472044	NBEA	Q8NFP9	2946 aa		0.2	□□□□□ -2.38
PTCD3-209	ENST00000472044	SMG1	Q96Q15	3661 aa	Known RBP	0.2	□□□□□ -2.38
PTCD3-209	ENST00000472044	TPR	P12270	2363 aa	Known RBP	0.2	□□□□□ -2.38
PTCD3-209	ENST00000472044	AKAP13	Q12802	2813 aa		0.2	□□□□□ -2.38
PTCD3-209	ENST00000472044	UTP20	O75691	2785 aa	Known RBP	0.2	□□□□□ -2.38
PTCD3-209	ENST00000472044	SRRM2	Q9UQ35	2752 aa	Known RBP	0.2	□□□□□ -2.38
PTCD3-209	ENST00000472044	JMJD1C	Q15652	2540 aa		0.2	□□□□□ -2.38
PTCD3-209	ENST00000472044	TNRC18	O15417	2968 aa	Predicted RBP	0.2	□□□□□ -2.38
PTCD3-209	ENST00000472044	KALRN	O60229	2985 aa		0.2	□□□□□ -2.38
PTCD3-209	ENST00000472044	SPTBN5	Q9NRC6	3674 aa	Known RBP	0.2	□□□□□ -2.38
PTCD3-209	ENST00000472044	CHD6	Q8TD26	2715 aa		0.2	□□□□□ -2.38
PTCD3-209	ENST00000472044	KIAA0100	Q14667	2235 aa	Known RBP	0.2	□□□□□ -2.38
PTCD3-209	ENST00000472044	NBEAL1	Q6ZS30	2694 aa		0.2	□□□□□ -2.38
PTCD3-209	ENST00000472044	SETX	Q7Z333	2677 aa	Known RBP	0.2	□□□□□ -2.38
PTCD3-209	ENST00000472044	BORCS7-ASMT	A0A0B4J1R7	106 aa		0.2	□□□□□ -2.38
PTCD3-209	ENST00000472044	TRAV2	A0A0B4J234	112 aa		0.2	□□□□□ -2.38
PTCD3-209	ENST00000472044	CXorf51A	A0A1B0GTR3	108 aa		0.2	□□□□□ -2.38
PTCD3-209	ENST00000472044	OR2H2	O95918	312 aa		0.2	□□□□□ -2.38
PTCD3-209	ENST00000472044	PAEP	P09466	180 aa		0.2	□□□□□ -2.38
PTCD3-209	ENST00000472044	DR1	Q01658	176 aa		0.2	□□□□□ -2.38
PTCD3-209	ENST00000472044	C1orf54	Q8WWF1	131 aa		0.2	□□□□□ -2.38
PTCD3-209	ENST00000472044	MAGOHB	Q96A72	148 aa	Known RBP	0.2	□□□□□ -2.38
PTCD3-209	ENST00000472044	TSC22D3	Q99576	134 aa		0.2	□□□□□ -2.38
PTCD3-209	ENST00000472044	LRBA	P50851	2863 aa		0.2	□□□□□ -2.38
PTCD3-209	ENST00000472044	COL6A5	A8TX70	2615 aa		0.2	□□□□□ -2.38
PTCD3-209	ENST00000472044	KMT2A	Q03164	3969 aa		0.2	□□□□□ -2.38
PTCD3-209	ENST00000472044	UHRF1BP1L	A0JNW5	1464 aa		0.2	□□□□□ -2.38
PTCD3-209	ENST00000472044	CCDC88B	A6NC98	1476 aa		0.2	□□□□□ -2.38
PTCD3-209	ENST00000472044	ZNF518A	Q6AHZ1	1483 aa		0.2	□□□□□ -2.38
PTCD3-209	ENST00000472044	VWF	P04275	2813 aa		0.2	□□□□□ -2.38
PTCD3-209	ENST00000472044	BPTF	Q12830	3046 aa		0.2	□□□□□ -2.38
PTCD3-209	ENST00000472044	DMXL1	Q9Y485	3027 aa		0.2	□□□□□ -2.38
PTCD3-209	ENST00000472044	PLXNA1	Q9UIW2	1896 aa		0.2	□□□□□ -2.38
PTCD3-209	ENST00000472044	ITPR2	Q14571	2701 aa		0.2	□□□□□ -2.38
PTCD3-209	ENST00000472044	TTC28	Q96AY4	2481 aa		0.2	□□□□□ -2.38
PTCD3-209	ENST00000472044	ANKRD11	Q6UB99	2663 aa	Predicted RBP	0.2	□□□□□ -2.38
PTCD3-209	ENST00000472044	TRRAP	Q9Y4A5	3859 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	VPS13B	Q7Z7G8	4022 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	TG	P01266	2768 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	PIEZO1	Q92508	2521 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	CSMD3	Q7Z407	3707 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	RIMS1	Q86UR5	1692 aa	Known RBP	0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	ERCC6	Q03468	1493 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	IQSEC2	Q5JU85	1478 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	TEX49	A0A1B0GTD5	131 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	DEGS1	O15121	323 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	YPEL1	O60688	119 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	SNAPC5	O75971	98 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	NCR2	O95944	276 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	DBI	P07108	87 aa	Known RBP	0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	SCGB1A1	P11684	91 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	BTG2	P78543	158 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	S100A12	P80511	92 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	CCDC58	Q4VC31	144 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	NDUFA11	Q86Y39	141 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	PYDC1	Q8WXC3	89 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	MAFIP	Q8WZ33	124 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	LZIC	Q8WZA0	190 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	NPVF	Q9HCQ7	196 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	TAS2R8	Q9NYW2	309 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	CALML5	Q9NZT1	146 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	DNAJC15	Q9Y5T4	150 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	MGA	Q8IWI9	3026 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	IGSF10	Q6WRI0	2623 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	CREBBP	Q92793	2442 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	TENM4	Q6N022	2769 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	STAB2	Q8WWQ8	2551 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	ZNF609	O15014	1411 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	TRO	Q12816	1431 aa	Predicted RBP	0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	NSD3	Q9BZ95	1437 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	REV3L	O60673	3130 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	HTT	P42858	3142 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	TACC2	O95359	2948 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	OTOG	Q6ZRI0	2925 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	NCOR2	Q9Y618	2525 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	ATM	Q13315	3056 aa		0.19	□□□□□ -2.38

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