RNA–Protein interactions for RNA: ENST00000469415.1

MCF2L-221, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 1 (best)

Gene MCF2L, Length 3,027 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-221ENST00000469415 DAZ1Q9NQZ3 744 aaKnown RBP13.47□□□□□ -0.25
MCF2L-221ENST00000469415 F5H697 171 aa13.47□□□□□ -0.25
MCF2L-221ENST00000469415 SYNJ2BPP57105 145 aa13.47□□□□□ -0.25
MCF2L-221ENST00000469415 DEFB136Q30KP8 78 aa13.47□□□□□ -0.25
MCF2L-221ENST00000469415 TMEM97Q5BJF2 176 aa13.47□□□□□ -0.25
MCF2L-221ENST00000469415 ZC2HC1BQ5TFG8 222 aa13.47□□□□□ -0.25
MCF2L-221ENST00000469415 BBC3Q96PG8 261 aaPredicted RBP13.47□□□□□ -0.25
MCF2L-221ENST00000469415 NXT2Q9NPJ8 142 aaKnown RBP13.47□□□□□ -0.25
MCF2L-221ENST00000469415 TMEM8BA6NDV4 472 aa13.46□□□□□ -0.25
MCF2L-221ENST00000469415 CNFNQ9BYD5 112 aa13.46□□□□□ -0.25
MCF2L-221ENST00000469415 MRPL35Q9NZE8 188 aaKnown RBP13.46□□□□□ -0.25
MCF2L-221ENST00000469415 PEF1Q9UBV8 284 aaKnown RBP13.46□□□□□ -0.25
MCF2L-221ENST00000469415 TRAV21A0A0B4J279 112 aa13.46□□□□□ -0.26
MCF2L-221ENST00000469415 ASIPP42127 132 aa13.46□□□□□ -0.26
MCF2L-221ENST00000469415 KHDC1LQ5JSQ8 128 aa13.46□□□□□ -0.26
MCF2L-221ENST00000469415 ORAOV1Q8WV07 137 aa13.46□□□□□ -0.26
MCF2L-221ENST00000469415 USMG5Q96IX5 58 aa13.45□□□□□ -0.26
MCF2L-221ENST00000469415 NIPBLQ6KC79 2804 aaeCLIP13.45□□□□□ -0.26
MCF2L-221ENST00000469415 EMP1P54849 157 aa13.45□□□□□ -0.26
MCF2L-221ENST00000469415 NRACQ8N912 160 aa13.45□□□□□ -0.26
MCF2L-221ENST00000469415 FGF6P10767 208 aa13.45□□□□□ -0.26
MCF2L-221ENST00000469415 ODF1Q14990 250 aa13.45□□□□□ -0.26
MCF2L-221ENST00000469415 MYOZ3Q8TDC0 251 aa13.45□□□□□ -0.26
MCF2L-221ENST00000469415 LINC00477Q96M19 166 aa13.45□□□□□ -0.26
MCF2L-221ENST00000469415 NDUFS8O00217 210 aa13.44□□□□□ -0.26
MCF2L-221ENST00000469415 CD7P09564 240 aa13.44□□□□□ -0.26
MCF2L-221ENST00000469415 GCSHP23434 173 aa13.44□□□□□ -0.26
MCF2L-221ENST00000469415 Q8N8P6 123 aa13.44□□□□□ -0.26
MCF2L-221ENST00000469415 KLK9Q9UKQ9 250 aa13.44□□□□□ -0.26
MCF2L-221ENST00000469415 A0A0G2JLM5 398 aa13.44□□□□□ -0.26
MCF2L-221ENST00000469415 LAGE3Q14657 143 aa13.44□□□□□ -0.26
MCF2L-221ENST00000469415 SMPXQ9UHP9 88 aa13.44□□□□□ -0.26
MCF2L-221ENST00000469415 FLNAP21333 2647 aaKnown RBP13.44□□□□□ -0.26
MCF2L-221ENST00000469415 MUC4Q99102 2169 aa13.43□□□□□ -0.26
MCF2L-221ENST00000469415 SOCS3O14543 225 aa13.43□□□□□ -0.26
MCF2L-221ENST00000469415 DEFB125Q8N687 156 aa13.43□□□□□ -0.26
MCF2L-221ENST00000469415 DPF1Q92782 380 aa13.43□□□□□ -0.26
MCF2L-221ENST00000469415 OVOL1O14753 267 aa13.42□□□□□ -0.26
MCF2L-221ENST00000469415 PRM2P04554 102 aa13.42□□□□□ -0.26
MCF2L-221ENST00000469415 C11orf44Q8N8P7 122 aa13.42□□□□□ -0.26
MCF2L-221ENST00000469415 H3BUT2 72 aa13.42□□□□□ -0.26
MCF2L-221ENST00000469415 IGKCP01834 107 aa13.42□□□□□ -0.26
MCF2L-221ENST00000469415 C18orf65Q6ZTR6 163 aa13.42□□□□□ -0.26
MCF2L-221ENST00000469415 SPINK13Q1W4C9 94 aa13.41□□□□□ -0.26
MCF2L-221ENST00000469415 FAM159AQ6UWV7 190 aa13.41□□□□□ -0.26
MCF2L-221ENST00000469415 MRPL53Q96EL3 112 aaKnown RBP13.41□□□□□ -0.26
MCF2L-221ENST00000469415 APCP25054 2843 aa13.4□□□□□ -0.26
MCF2L-221ENST00000469415 IGLV2-18A0A075B6J9 118 aa13.4□□□□□ -0.26
MCF2L-221ENST00000469415 IGLV1-40P01703 118 aa13.4□□□□□ -0.26
MCF2L-221ENST00000469415 RASL10AQ92737 203 aa13.4□□□□□ -0.26
MCF2L-221ENST00000469415 ZNF469Q96JG9 3925 aaPredicted RBP13.4□□□□□ -0.26
MCF2L-221ENST00000469415 ITPR3Q14573 2671 aa13.4□□□□□ -0.26
MCF2L-221ENST00000469415 RNASE3P12724 160 aaKnown RBP13.4□□□□□ -0.26
MCF2L-221ENST00000469415 SRSF2Q01130 221 aaKnown RBP13.4□□□□□ -0.26
MCF2L-221ENST00000469415 BOD1L2Q8IYS8 172 aa13.4□□□□□ -0.26
MCF2L-221ENST00000469415 AP1S3Q96PC3 154 aa13.4□□□□□ -0.26
MCF2L-221ENST00000469415 K7ERJ3 54 aa13.39□□□□□ -0.27
MCF2L-221ENST00000469415 KLK9Q2XQG4 91 aa13.39□□□□□ -0.27
MCF2L-221ENST00000469415 SUMO2P61956 95 aaKnown RBP13.39□□□□□ -0.27
MCF2L-221ENST00000469415 HIST2H2BCQ6DN03 193 aa13.39□□□□□ -0.27
MCF2L-221ENST00000469415 SCGB3A1Q96QR1 104 aa13.39□□□□□ -0.27
MCF2L-221ENST00000469415 SMIM2Q9BVW6 85 aa13.39□□□□□ -0.27
MCF2L-221ENST00000469415 HHLA3Q9XRX5 114 aa13.39□□□□□ -0.27
MCF2L-221ENST00000469415 COX6B1P14854 86 aa13.39□□□□□ -0.27
MCF2L-221ENST00000469415 SRSF1Q07955 248 aaKnown RBP eCLIP13.39□□□□□ -0.27
MCF2L-221ENST00000469415 HOXA3O43365 443 aaPredicted RBP13.38□□□□□ -0.27
MCF2L-221ENST00000469415 LINC01356Q8N9X3 169 aa13.38□□□□□ -0.27
MCF2L-221ENST00000469415 GAGE12BA1L429 117 aa13.38□□□□□ -0.27
MCF2L-221ENST00000469415 DPM2O94777 84 aa13.38□□□□□ -0.27
MCF2L-221ENST00000469415 MDFICQ9P1T7 246 aa13.38□□□□□ -0.27
MCF2L-221ENST00000469415 CRIP2P52943 208 aaPredicted RBP13.37□□□□□ -0.27
MCF2L-221ENST00000469415 DPH3P1Q9H4G8 78 aa13.37□□□□□ -0.27
MCF2L-221ENST00000469415 IGHV4OR15-8A0A075B7B6 117 aa13.37□□□□□ -0.27
MCF2L-221ENST00000469415 A0A087WW49 117 aa13.37□□□□□ -0.27
MCF2L-221ENST00000469415 ZNF256Q9Y2P7 627 aaPredicted RBP13.37□□□□□ -0.27
MCF2L-221ENST00000469415 IGHV3-73A0A0B4J1V6 119 aa13.37□□□□□ -0.27
MCF2L-221ENST00000469415 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.37□□□□□ -0.27
MCF2L-221ENST00000469415 MAPKAPK5-AS1Q8N8E1 139 aa13.37□□□□□ -0.27
MCF2L-221ENST00000469415 NBPF19A0A087WUL8 3843 aa13.36□□□□□ -0.27
MCF2L-221ENST00000469415 CIDEAO60543 219 aa13.36□□□□□ -0.27
MCF2L-221ENST00000469415 PSMB8P28062 276 aa13.36□□□□□ -0.27
MCF2L-221ENST00000469415 DCANP1Q8TF63 244 aa13.36□□□□□ -0.27
MCF2L-221ENST00000469415 FXYD2P54710 66 aa13.35□□□□□ -0.27
MCF2L-221ENST00000469415 ID1P41134 155 aa13.35□□□□□ -0.27
MCF2L-221ENST00000469415 OR1N2Q8NGR9 330 aa13.35□□□□□ -0.27
MCF2L-221ENST00000469415 KNCNA6PVL3 124 aa13.34□□□□□ -0.27
MCF2L-221ENST00000469415 ATP5LO75964 103 aa13.34□□□□□ -0.27
MCF2L-221ENST00000469415 SLURP1P55000 103 aa13.34□□□□□ -0.27
MCF2L-221ENST00000469415 RPL39P62891 51 aaKnown RBP13.34□□□□□ -0.27
MCF2L-221ENST00000469415 C2orf66Q6UXQ4 117 aa13.34□□□□□ -0.27
MCF2L-221ENST00000469415 JMJD8Q96S16 334 aa13.34□□□□□ -0.27
MCF2L-221ENST00000469415 ADAMTSL5Q6ZMM2 481 aa13.33□□□□□ -0.28
MCF2L-221ENST00000469415 TRBV25-1A0A075B6N4 114 aa13.33□□□□□ -0.28
MCF2L-221ENST00000469415 GAGE10A6NGK3 116 aa13.33□□□□□ -0.28
MCF2L-221ENST00000469415 DUSP14O95147 198 aaKnown RBP13.33□□□□□ -0.28
MCF2L-221ENST00000469415 HOXD3P31249 432 aaPredicted RBP13.33□□□□□ -0.28
MCF2L-221ENST00000469415 CFHR3Q02985 330 aa13.33□□□□□ -0.28
MCF2L-221ENST00000469415 NHP2Q9NX24 153 aaKnown RBP13.33□□□□□ -0.28
MCF2L-221ENST00000469415 ZNF56Q15929 161 aa13.32□□□□□ -0.28
MCF2L-221ENST00000469415 CHAC1Q9BUX1 264 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms