RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 LY6G6DO95868 133 aa13.65□□□□□ -0.22
COL9A3-205ENST00000466192 NPYP01303 97 aa13.65□□□□□ -0.22
COL9A3-205ENST00000466192 OR5AL1P0C617 328 aa13.65□□□□□ -0.22
COL9A3-205ENST00000466192 SNRPD3P62318 126 aaKnown RBP13.65□□□□□ -0.22
COL9A3-205ENST00000466192 Q6ZN92 141 aa13.65□□□□□ -0.22
COL9A3-205ENST00000466192 OR9G4Q8NGQ1 327 aa13.65□□□□□ -0.22
COL9A3-205ENST00000466192 LINC01006Q8NI28 216 aa13.65□□□□□ -0.22
COL9A3-205ENST00000466192 WFDC12Q8WWY7 111 aa13.65□□□□□ -0.22
COL9A3-205ENST00000466192 CD28P10747 220 aa13.65□□□□□ -0.22
COL9A3-205ENST00000466192 EVI2AP22794 236 aa13.65□□□□□ -0.22
COL9A3-205ENST00000466192 HILS1P60008 231 aa13.65□□□□□ -0.22
COL9A3-205ENST00000466192 SPANXN1Q5VSR9 72 aa13.65□□□□□ -0.22
COL9A3-205ENST00000466192 SPATA12Q7Z6I5 190 aa13.65□□□□□ -0.22
COL9A3-205ENST00000466192 ZNF418Q8TF45 676 aaPredicted RBP13.65□□□□□ -0.22
COL9A3-205ENST00000466192 C16orf95Q9H693 158 aa13.65□□□□□ -0.22
COL9A3-205ENST00000466192 K7EP13 123 aa13.64□□□□□ -0.23
COL9A3-205ENST00000466192 GAS8-AS1O95177 125 aa13.64□□□□□ -0.23
COL9A3-205ENST00000466192 COTL1Q14019 142 aa13.64□□□□□ -0.23
COL9A3-205ENST00000466192 SNAI2O43623 268 aa13.64□□□□□ -0.23
COL9A3-205ENST00000466192 UBE2V1Q13404 147 aa13.64□□□□□ -0.23
COL9A3-205ENST00000466192 ANXA2RQ3ZCQ2 193 aa13.64□□□□□ -0.23
COL9A3-205ENST00000466192 PEMTQ9UBM1 199 aa13.64□□□□□ -0.23
COL9A3-205ENST00000466192 CDKN1BP46527 198 aa13.63□□□□□ -0.23
COL9A3-205ENST00000466192 RAX2Q96IS3 184 aa13.63□□□□□ -0.23
COL9A3-205ENST00000466192 SETXQ7Z333 2677 aaKnown RBP13.62□□□□□ -0.23
COL9A3-205ENST00000466192 A0A0J9YX75 114 aa13.62□□□□□ -0.23
COL9A3-205ENST00000466192 A0A1W2PRX2 142 aa13.62□□□□□ -0.23
COL9A3-205ENST00000466192 SPRY2O43597 315 aa13.62□□□□□ -0.23
COL9A3-205ENST00000466192 MRPS16Q9Y3D3 137 aaKnown RBP13.62□□□□□ -0.23
COL9A3-205ENST00000466192 KLLNB2CW77 178 aa13.62□□□□□ -0.23
COL9A3-205ENST00000466192 SYS1-DBNDD2H3BUS1 97 aa13.62□□□□□ -0.23
COL9A3-205ENST00000466192 S100A4P26447 101 aaKnown RBP13.62□□□□□ -0.23
COL9A3-205ENST00000466192 MAJINQ3KP22 176 aa13.62□□□□□ -0.23
COL9A3-205ENST00000466192 PPBPP02775 128 aa13.61□□□□□ -0.23
COL9A3-205ENST00000466192 SMIM15Q7Z3B0 74 aa13.61□□□□□ -0.23
COL9A3-205ENST00000466192 CITED2Q99967 270 aaPredicted RBP13.61□□□□□ -0.23
COL9A3-205ENST00000466192 HSPB8Q9UJY1 196 aa13.61□□□□□ -0.23
COL9A3-205ENST00000466192 COX11Q9Y6N1 276 aa13.61□□□□□ -0.23
COL9A3-205ENST00000466192 H0Y8G0 127 aa13.61□□□□□ -0.23
COL9A3-205ENST00000466192 CRXO43186 299 aaPredicted RBP13.61□□□□□ -0.23
COL9A3-205ENST00000466192 GATA1P15976 413 aaPredicted RBP13.61□□□□□ -0.23
COL9A3-205ENST00000466192 CACNG7P62955 275 aa13.61□□□□□ -0.23
COL9A3-205ENST00000466192 IGHV4-4A0A075B6R2 117 aa13.6□□□□□ -0.23
COL9A3-205ENST00000466192 M0R381 172 aa13.6□□□□□ -0.23
COL9A3-205ENST00000466192 GNRH2O43555 120 aa13.6□□□□□ -0.23
COL9A3-205ENST00000466192 IGKV3-20P01619 116 aa13.6□□□□□ -0.23
COL9A3-205ENST00000466192 TSPOP30536 169 aa13.6□□□□□ -0.23
COL9A3-205ENST00000466192 ASIPP42127 132 aa13.6□□□□□ -0.23
COL9A3-205ENST00000466192 FXYD7P58549 80 aa13.6□□□□□ -0.23
COL9A3-205ENST00000466192 MAP1LC3CQ9BXW4 147 aa13.6□□□□□ -0.23
COL9A3-205ENST00000466192 A0A096LNJ9 63 aa13.59□□□□□ -0.23
COL9A3-205ENST00000466192 FHL3Q13643 280 aa13.59□□□□□ -0.23
COL9A3-205ENST00000466192 TMEM61Q8N0U2 210 aa13.59□□□□□ -0.23
COL9A3-205ENST00000466192 TNFRSF6BO95407 300 aa13.59□□□□□ -0.23
COL9A3-205ENST00000466192 MCRIP2Q9BUT9 160 aaKnown RBP13.59□□□□□ -0.23
COL9A3-205ENST00000466192 MAP1LC3AQ9H492 121 aa13.59□□□□□ -0.23
COL9A3-205ENST00000466192 ODF3Q96PU9 254 aa13.58□□□□□ -0.24
COL9A3-205ENST00000466192 PHLDA3Q9Y5J5 127 aa13.58□□□□□ -0.24
COL9A3-205ENST00000466192 TRAV26-2A0A0B4J265 109 aa13.58□□□□□ -0.24
COL9A3-205ENST00000466192 CCL24O00175 119 aa13.58□□□□□ -0.24
COL9A3-205ENST00000466192 ZNF747Q9BV97 191 aa13.58□□□□□ -0.24
COL9A3-205ENST00000466192 NSD1Q96L73 2696 aaPredicted RBP13.58□□□□□ -0.24
COL9A3-205ENST00000466192 TRAV12-3A0A0B4J271 114 aa13.57□□□□□ -0.24
COL9A3-205ENST00000466192 OR4C46A6NHA9 309 aa13.57□□□□□ -0.24
COL9A3-205ENST00000466192 TSSC4Q9Y5U2 329 aaPredicted RBP13.57□□□□□ -0.24
COL9A3-205ENST00000466192 HINT1P49773 126 aaPredicted RBP13.56□□□□□ -0.24
COL9A3-205ENST00000466192 DEFB114Q30KQ6 69 aa13.56□□□□□ -0.24
COL9A3-205ENST00000466192 FOXI2Q6ZQN5 318 aa13.56□□□□□ -0.24
COL9A3-205ENST00000466192 DYNLRB2Q8TF09 96 aa13.56□□□□□ -0.24
COL9A3-205ENST00000466192 MUC4Q99102 2169 aa13.56□□□□□ -0.24
COL9A3-205ENST00000466192 TRAV9-2A0A087WT02 112 aa13.56□□□□□ -0.24
COL9A3-205ENST00000466192 RNASE3P12724 160 aaKnown RBP13.56□□□□□ -0.24
COL9A3-205ENST00000466192 LEPP41159 167 aa13.56□□□□□ -0.24
COL9A3-205ENST00000466192 FAM159AQ6UWV7 190 aa13.56□□□□□ -0.24
COL9A3-205ENST00000466192 HIVEP1P15822 2718 aa13.56□□□□□ -0.24
COL9A3-205ENST00000466192 TRAV12-2A0A075B6T6 113 aa13.55□□□□□ -0.24
COL9A3-205ENST00000466192 NDUFA7O95182 113 aa13.55□□□□□ -0.24
COL9A3-205ENST00000466192 TRAV2A0A0B4J234 112 aa13.55□□□□□ -0.24
COL9A3-205ENST00000466192 C7orf71A4D174 169 aa13.55□□□□□ -0.24
COL9A3-205ENST00000466192 DEFB131AP59861 70 aa13.55□□□□□ -0.24
COL9A3-205ENST00000466192 PET117Q6UWS5 81 aa13.55□□□□□ -0.24
COL9A3-205ENST00000466192 OR2K2Q8NGT1 345 aa13.55□□□□□ -0.24
COL9A3-205ENST00000466192 SCRT2Q9NQ03 307 aa13.55□□□□□ -0.24
COL9A3-205ENST00000466192 DUSP14O95147 198 aaKnown RBP13.54□□□□□ -0.24
COL9A3-205ENST00000466192 HBDP02042 147 aa13.54□□□□□ -0.24
COL9A3-205ENST00000466192 CD300EQ496F6 205 aaPredicted RBP13.54□□□□□ -0.24
COL9A3-205ENST00000466192 Q6ZVH6 145 aa13.54□□□□□ -0.24
COL9A3-205ENST00000466192 PMCHL2Q9BQD1 86 aa13.54□□□□□ -0.24
COL9A3-205ENST00000466192 NIPBLQ6KC79 2804 aaeCLIP13.54□□□□□ -0.24
COL9A3-205ENST00000466192 INAFM1C9JVW0 142 aa13.54□□□□□ -0.24
COL9A3-205ENST00000466192 SPINK13Q1W4C9 94 aa13.54□□□□□ -0.24
COL9A3-205ENST00000466192 AMTNQ6UX39 209 aa13.54□□□□□ -0.24
COL9A3-205ENST00000466192 JMJD8Q96S16 334 aa13.54□□□□□ -0.24
COL9A3-205ENST00000466192 KNCNA6PVL3 124 aa13.53□□□□□ -0.24
COL9A3-205ENST00000466192 MED14OSP0DP75 135 aa13.53□□□□□ -0.24
COL9A3-205ENST00000466192 IGLL1P15814 213 aa13.53□□□□□ -0.24
COL9A3-205ENST00000466192 PROK1P58294 105 aa13.53□□□□□ -0.24
COL9A3-205ENST00000466192 C14orf178Q8N769 122 aaPredicted RBP13.53□□□□□ -0.24
COL9A3-205ENST00000466192 NRACQ8N912 160 aa13.53□□□□□ -0.24
COL9A3-205ENST00000466192 CD7P09564 240 aa13.52□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms