RNA–Protein interactions for RNA: ENST00000461874.1

VARS-220, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 845 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-220ENST00000461874 ZNF506Q5JVG8 444 aa12.83□□□□□ -0.36
VARS-220ENST00000461874 PRADC1Q9BSG0 188 aa12.83□□□□□ -0.36
VARS-220ENST00000461874 IGHV3-73A0A0B4J1V6 119 aa12.82□□□□□ -0.36
VARS-220ENST00000461874 IGKV3D-20A0A0C4DH25 116 aa12.82□□□□□ -0.36
VARS-220ENST00000461874 TRBV6-4A0A1B0GX49 114 aa12.82□□□□□ -0.36
VARS-220ENST00000461874 EREGO14944 169 aa12.82□□□□□ -0.36
VARS-220ENST00000461874 MAPKAPK5-AS1Q8N8E1 139 aa12.82□□□□□ -0.36
VARS-220ENST00000461874 HIST1H2BAQ96A08 127 aa12.82□□□□□ -0.36
VARS-220ENST00000461874 PGPEP1Q9NXJ5 209 aa12.82□□□□□ -0.36
VARS-220ENST00000461874 FABP5P3A8MUU1 101 aa12.81□□□□□ -0.36
VARS-220ENST00000461874 CRYGDP07320 174 aa12.81□□□□□ -0.36
VARS-220ENST00000461874 RHOHQ15669 191 aa12.81□□□□□ -0.36
VARS-220ENST00000461874 Q86TA4 180 aa12.81□□□□□ -0.36
VARS-220ENST00000461874 MAP1LC3B2A6NCE7 125 aa12.8□□□□□ -0.36
VARS-220ENST00000461874 C10orf126Q8N4M7 172 aa12.8□□□□□ -0.36
VARS-220ENST00000461874 MAP1LC3BQ9GZQ8 125 aa12.8□□□□□ -0.36
VARS-220ENST00000461874 A0A087WTM6 91 aa12.79□□□□□ -0.36
VARS-220ENST00000461874 IGHV3-38A0A0C4DH36 116 aa12.79□□□□□ -0.36
VARS-220ENST00000461874 SMLR1H3BR10 107 aa12.79□□□□□ -0.36
VARS-220ENST00000461874 MGST1P10620 155 aaKnown RBP12.79□□□□□ -0.36
VARS-220ENST00000461874 S100A4P26447 101 aaKnown RBP12.79□□□□□ -0.36
VARS-220ENST00000461874 PIK3CD-AS1Q5SR53 167 aa12.79□□□□□ -0.36
VARS-220ENST00000461874 ASIPP42127 132 aa12.78□□□□□ -0.36
VARS-220ENST00000461874 CRIP1P50238 77 aa12.78□□□□□ -0.36
VARS-220ENST00000461874 LINC01556Q5JQF7 62 aa12.78□□□□□ -0.36
VARS-220ENST00000461874 COX8CQ7Z4L0 72 aa12.78□□□□□ -0.36
VARS-220ENST00000461874 ZFP30Q9Y2G7 519 aa12.78□□□□□ -0.36
VARS-220ENST00000461874 TRAV8-6A0A0B4J262 113 aa12.77□□□□□ -0.37
VARS-220ENST00000461874 FUSP35637 526 aaKnown RBP eCLIP12.77□□□□□ -0.37
VARS-220ENST00000461874 CDPF1Q6NVV7 123 aa12.77□□□□□ -0.37
VARS-220ENST00000461874 ZFP2Q6ZN57 461 aa12.77□□□□□ -0.37
VARS-220ENST00000461874 Q6ZSN1 163 aa12.77□□□□□ -0.37
VARS-220ENST00000461874 Q8N1X5 172 aa12.77□□□□□ -0.37
VARS-220ENST00000461874 ZC2HC1AQ96GY0 325 aa12.77□□□□□ -0.37
VARS-220ENST00000461874 PARLQ9H300 379 aa12.77□□□□□ -0.37
VARS-220ENST00000461874 IL36BQ9NZH7 164 aa12.77□□□□□ -0.37
VARS-220ENST00000461874 A8MWV9 139 aa12.76□□□□□ -0.37
VARS-220ENST00000461874 B4DEV8 164 aa12.76□□□□□ -0.37
VARS-220ENST00000461874 FHITP49789 147 aa12.76□□□□□ -0.37
VARS-220ENST00000461874 LGALSLQ3ZCW2 172 aaPredicted RBP12.76□□□□□ -0.37
VARS-220ENST00000461874 OR10J3Q5JRS4 329 aa12.76□□□□□ -0.37
VARS-220ENST00000461874 KCNRGQ8N5I3 272 aa12.76□□□□□ -0.37
VARS-220ENST00000461874 STOML3Q8TAV4 291 aa12.76□□□□□ -0.37
VARS-220ENST00000461874 FMC1Q96HJ9 113 aa12.76□□□□□ -0.37
VARS-220ENST00000461874 TCEAL7Q9BRU2 100 aa12.76□□□□□ -0.37
VARS-220ENST00000461874 BOLA1Q9Y3E2 137 aa12.76□□□□□ -0.37
VARS-220ENST00000461874 KRBOX1C9JBD0 128 aa12.75□□□□□ -0.37
VARS-220ENST00000461874 ZNF345Q14585 488 aa12.75□□□□□ -0.37
VARS-220ENST00000461874 DNLZQ5SXM8 178 aa12.75□□□□□ -0.37
VARS-220ENST00000461874 LELP1Q5T871 98 aa12.75□□□□□ -0.37
VARS-220ENST00000461874 ATP6V0E2Q8NHE4 81 aa12.75□□□□□ -0.37
VARS-220ENST00000461874 GTSF1LQ9H1H1 148 aa12.75□□□□□ -0.37
VARS-220ENST00000461874 TRBV6-1A0A0K0K1D8 114 aa12.74□□□□□ -0.37
VARS-220ENST00000461874 H3BVH4 76 aa12.74□□□□□ -0.37
VARS-220ENST00000461874 SH2D1AO60880 128 aa12.74□□□□□ -0.37
VARS-220ENST00000461874 UBE2G1P62253 170 aa12.74□□□□□ -0.37
VARS-220ENST00000461874 FAM162BQ5T6X4 162 aa12.74□□□□□ -0.37
VARS-220ENST00000461874 CST9LP1Q5W188 147 aa12.74□□□□□ -0.37
VARS-220ENST00000461874 UFSP1Q6NVU6 142 aa12.74□□□□□ -0.37
VARS-220ENST00000461874 JPT2Q9H910 190 aa12.74□□□□□ -0.37
VARS-220ENST00000461874 IBA57-AS1B1ANH7 110 aa12.73□□□□□ -0.37
VARS-220ENST00000461874 M0R036 132 aa12.73□□□□□ -0.37
VARS-220ENST00000461874 LTAP01374 205 aa12.73□□□□□ -0.37
VARS-220ENST00000461874 DMRTA1Q5VZB9 504 aa12.73□□□□□ -0.37
VARS-220ENST00000461874 SAMD10Q9BYL1 202 aa12.73□□□□□ -0.37
VARS-220ENST00000461874 SCRT2Q9NQ03 307 aa12.73□□□□□ -0.37
VARS-220ENST00000461874 GRIFINA4D1Z8 144 aa12.72□□□□□ -0.37
VARS-220ENST00000461874 HMSDA8MTL9 139 aa12.72□□□□□ -0.37
VARS-220ENST00000461874 ARMS2P0C7Q2 107 aa12.72□□□□□ -0.37
VARS-220ENST00000461874 SEC11BP0C7V7 166 aa12.72□□□□□ -0.37
VARS-220ENST00000461874 LINC00694P0DN24 101 aa12.72□□□□□ -0.37
VARS-220ENST00000461874 ZNF674Q2M3X9 581 aa12.72□□□□□ -0.37
VARS-220ENST00000461874 OR11H4Q8NGC9 324 aa12.72□□□□□ -0.37
VARS-220ENST00000461874 MBD3L1Q8WWY6 194 aa12.72□□□□□ -0.37
VARS-220ENST00000461874 GAGE12JA6NER3 117 aa12.71□□□□□ -0.37
VARS-220ENST00000461874 UMAD1C9J7I0 102 aa12.71□□□□□ -0.37
VARS-220ENST00000461874 PAGE4O60829 102 aa12.71□□□□□ -0.37
VARS-220ENST00000461874 GAGE1Q13065 139 aa12.71□□□□□ -0.37
VARS-220ENST00000461874 GAGE4Q13068 117 aa12.71□□□□□ -0.37
VARS-220ENST00000461874 GAGE5Q13069 117 aa12.71□□□□□ -0.37
VARS-220ENST00000461874 GAGE13Q4V321 117 aa12.71□□□□□ -0.37
VARS-220ENST00000461874 SYT8Q8NBV8 401 aa12.71□□□□□ -0.37
VARS-220ENST00000461874 SFT2D1Q8WV19 159 aa12.71□□□□□ -0.37
VARS-220ENST00000461874 Q9UF83 564 aa12.71□□□□□ -0.37
VARS-220ENST00000461874 A0A0D9SG52 128 aa12.7□□□□□ -0.38
VARS-220ENST00000461874 IGHV3-30P01768 117 aa12.7□□□□□ -0.38
VARS-220ENST00000461874 IGHV3-33P01772 117 aa12.7□□□□□ -0.38
VARS-220ENST00000461874 IGHV3-30-3P0DP02 117 aa12.7□□□□□ -0.38
VARS-220ENST00000461874 IGHV3-30-5P0DP03 117 aa12.7□□□□□ -0.38
VARS-220ENST00000461874 AKR1C3P42330 323 aa12.7□□□□□ -0.38
VARS-220ENST00000461874 LINC01559Q495D7 138 aa12.7□□□□□ -0.38
VARS-220ENST00000461874 C14orf178Q8N769 122 aaPredicted RBP12.7□□□□□ -0.38
VARS-220ENST00000461874 FAM213BQ8TBF2 198 aa12.7□□□□□ -0.38
VARS-220ENST00000461874 LRCOL1A6NCL2 159 aa12.69□□□□□ -0.38
VARS-220ENST00000461874 RHODO00212 210 aa12.69□□□□□ -0.38
VARS-220ENST00000461874 PSCAO43653 123 aa12.69□□□□□ -0.38
VARS-220ENST00000461874 KRTAP10-1P60331 282 aa12.69□□□□□ -0.38
VARS-220ENST00000461874 ZNF471Q9BX82 626 aaPredicted RBP12.69□□□□□ -0.38
VARS-220ENST00000461874 PHLDA3Q9Y5J5 127 aa12.69□□□□□ -0.38
VARS-220ENST00000461874 TMSB15BA0A087X1C1 80 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms