RNA–Protein interactions for RNA: ENST00000457422.6

CCDC43-202, Transcript of coiled-coil domain containing 43, humanhuman

TSL 1 (best) BASIC

Gene CCDC43, Length 2,058 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-202ENST00000457422 SMIM2Q9BVW6 85 aa12.47□□□□□ -0.41
CCDC43-202ENST00000457422 A0A0J9YX75 114 aa12.47□□□□□ -0.41
CCDC43-202ENST00000457422 POM121L12Q8N7R1 296 aa12.47□□□□□ -0.41
CCDC43-202ENST00000457422 AP1S3Q96PC3 154 aa12.47□□□□□ -0.41
CCDC43-202ENST00000457422 ZMAT4Q9H898 229 aa12.47□□□□□ -0.41
CCDC43-202ENST00000457422 FGF6P10767 208 aa12.46□□□□□ -0.41
CCDC43-202ENST00000457422 ODF1Q14990 250 aa12.46□□□□□ -0.41
CCDC43-202ENST00000457422 MPV17L2Q567V2 206 aa12.46□□□□□ -0.41
CCDC43-202ENST00000457422 FAM159AQ6UWV7 190 aa12.46□□□□□ -0.41
CCDC43-202ENST00000457422 RASL10AQ92737 203 aa12.46□□□□□ -0.41
CCDC43-202ENST00000457422 C20orf78Q9BR46 151 aa12.46□□□□□ -0.41
CCDC43-202ENST00000457422 ATP5LO75964 103 aa12.46□□□□□ -0.42
CCDC43-202ENST00000457422 SMIM17P0DL12 118 aa12.46□□□□□ -0.42
CCDC43-202ENST00000457422 C12orf54Q6X4T0 127 aa12.46□□□□□ -0.42
CCDC43-202ENST00000457422 C14orf178Q8N769 122 aaPredicted RBP12.46□□□□□ -0.42
CCDC43-202ENST00000457422 DKK2Q9UBU2 259 aa12.46□□□□□ -0.42
CCDC43-202ENST00000457422 C7orf71A4D174 169 aa12.45□□□□□ -0.42
CCDC43-202ENST00000457422 C2orf91Q6ZV80 131 aa12.45□□□□□ -0.42
CCDC43-202ENST00000457422 MUC4Q99102 2169 aa12.45□□□□□ -0.42
CCDC43-202ENST00000457422 TEX15Q9BXT5 2789 aa12.44□□□□□ -0.42
CCDC43-202ENST00000457422 APCP25054 2843 aa12.44□□□□□ -0.42
CCDC43-202ENST00000457422 K7EMI3 77 aa12.44□□□□□ -0.42
CCDC43-202ENST00000457422 NUDT3O95989 172 aa12.44□□□□□ -0.42
CCDC43-202ENST00000457422 SUMO2P61956 95 aaKnown RBP12.44□□□□□ -0.42
CCDC43-202ENST00000457422 BVES-AS1Q5T3Y7 98 aa12.44□□□□□ -0.42
CCDC43-202ENST00000457422 C18orf65Q6ZTR6 163 aa12.44□□□□□ -0.42
CCDC43-202ENST00000457422 BOD1L2Q8IYS8 172 aa12.44□□□□□ -0.42
CCDC43-202ENST00000457422 TRAV12-3A0A0B4J271 114 aa12.43□□□□□ -0.42
CCDC43-202ENST00000457422 PPP1R17O96001 155 aa12.43□□□□□ -0.42
CCDC43-202ENST00000457422 MGPP08493 103 aa12.43□□□□□ -0.42
CCDC43-202ENST00000457422 ORAOV1Q8WV07 137 aa12.43□□□□□ -0.42
CCDC43-202ENST00000457422 KIF25-AS1Q9Y6Z4 181 aa12.43□□□□□ -0.42
CCDC43-202ENST00000457422 IGKV3-20P01619 116 aa12.42□□□□□ -0.42
CCDC43-202ENST00000457422 PRSS1P07477 247 aa12.42□□□□□ -0.42
CCDC43-202ENST00000457422 DEFB136Q30KP8 78 aa12.42□□□□□ -0.42
CCDC43-202ENST00000457422 ORMDL2Q53FV1 153 aa12.42□□□□□ -0.42
CCDC43-202ENST00000457422 LINC00315P59091 139 aa12.42□□□□□ -0.42
CCDC43-202ENST00000457422 RPL39LQ96EH5 51 aaKnown RBP12.42□□□□□ -0.42
CCDC43-202ENST00000457422 DUSP14O95147 198 aaKnown RBP12.41□□□□□ -0.42
CCDC43-202ENST00000457422 SLURP1P55000 103 aa12.41□□□□□ -0.42
CCDC43-202ENST00000457422 TCTAP57738 103 aa12.41□□□□□ -0.42
CCDC43-202ENST00000457422 ADAMTSL5Q6ZMM2 481 aa12.41□□□□□ -0.42
CCDC43-202ENST00000457422 FOXI2Q6ZQN5 318 aa12.41□□□□□ -0.42
CCDC43-202ENST00000457422 TMEM86BQ8N661 226 aa12.41□□□□□ -0.42
CCDC43-202ENST00000457422 FOXC2Q99958 501 aa12.41□□□□□ -0.42
CCDC43-202ENST00000457422 COX11Q9Y6N1 276 aa12.41□□□□□ -0.42
CCDC43-202ENST00000457422 CD7P09564 240 aa12.41□□□□□ -0.42
CCDC43-202ENST00000457422 CDKN1BP46527 198 aa12.41□□□□□ -0.42
CCDC43-202ENST00000457422 HHLA3Q9XRX5 114 aa12.41□□□□□ -0.42
CCDC43-202ENST00000457422 TRAV12-2A0A075B6T6 113 aa12.4□□□□□ -0.42
CCDC43-202ENST00000457422 SIVA1O15304 175 aa12.4□□□□□ -0.42
CCDC43-202ENST00000457422 IGKCP01834 107 aa12.4□□□□□ -0.42
CCDC43-202ENST00000457422 TCTEX1D4Q5JR98 221 aa12.4□□□□□ -0.42
CCDC43-202ENST00000457422 TEX29Q8N6K0 151 aa12.4□□□□□ -0.42
CCDC43-202ENST00000457422 OR9G4Q8NGQ1 327 aa12.4□□□□□ -0.42
CCDC43-202ENST00000457422 C9orf85Q96MD7 179 aa12.4□□□□□ -0.42
CCDC43-202ENST00000457422 NBPF19A0A087WUL8 3843 aa12.4□□□□□ -0.42
CCDC43-202ENST00000457422 NPSP0C0P6 89 aa12.39□□□□□ -0.43
CCDC43-202ENST00000457422 RPL32P62910 135 aaKnown RBP12.39□□□□□ -0.43
CCDC43-202ENST00000457422 WFDC11Q8NEX6 87 aa12.39□□□□□ -0.43
CCDC43-202ENST00000457422 ZNF469Q96JG9 3925 aaPredicted RBP12.39□□□□□ -0.43
CCDC43-202ENST00000457422 IGHV3-16A0A0C4DH30 117 aa12.39□□□□□ -0.43
CCDC43-202ENST00000457422 DPM2O94777 84 aa12.39□□□□□ -0.43
CCDC43-202ENST00000457422 TOMM6Q96B49 74 aa12.39□□□□□ -0.43
CCDC43-202ENST00000457422 LINC01619G3V211 115 aa12.38□□□□□ -0.43
CCDC43-202ENST00000457422 HIST2H2BCQ6DN03 193 aa12.38□□□□□ -0.43
CCDC43-202ENST00000457422 AMTNQ6UX39 209 aa12.38□□□□□ -0.43
CCDC43-202ENST00000457422 Q6ZVH6 145 aa12.38□□□□□ -0.43
CCDC43-202ENST00000457422 C4orf3Q8WVX3 66 aa12.38□□□□□ -0.43
CCDC43-202ENST00000457422 ITPR3Q14573 2671 aa12.38□□□□□ -0.43
CCDC43-202ENST00000457422 SPINK13Q1W4C9 94 aa12.38□□□□□ -0.43
CCDC43-202ENST00000457422 IGHV1OR15-1A0A075B7D0 117 aa12.37□□□□□ -0.43
CCDC43-202ENST00000457422 A0A087WX48 190 aa12.37□□□□□ -0.43
CCDC43-202ENST00000457422 TRAV2A0A0B4J234 112 aa12.37□□□□□ -0.43
CCDC43-202ENST00000457422 TRAV12-1A0A0B4J245 112 aa12.37□□□□□ -0.43
CCDC43-202ENST00000457422 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.37□□□□□ -0.43
CCDC43-202ENST00000457422 JPT2Q9H910 190 aa12.37□□□□□ -0.43
CCDC43-202ENST00000457422 AGRNO00468 2067 aa12.37□□□□□ -0.43
CCDC43-202ENST00000457422 NMUP48645 174 aa12.36□□□□□ -0.43
CCDC43-202ENST00000457422 DUX3Q96PT4 197 aa12.36□□□□□ -0.43
CCDC43-202ENST00000457422 TENM4Q6N022 2769 aa12.36□□□□□ -0.43
CCDC43-202ENST00000457422 A8MTW9 85 aa12.36□□□□□ -0.43
CCDC43-202ENST00000457422 TMEM97Q5BJF2 176 aa12.36□□□□□ -0.43
CCDC43-202ENST00000457422 KHDC1LQ5JSQ8 128 aa12.36□□□□□ -0.43
CCDC43-202ENST00000457422 PCP2Q8IVA1 136 aa12.36□□□□□ -0.43
CCDC43-202ENST00000457422 OR11H1Q8NG94 326 aa12.36□□□□□ -0.43
CCDC43-202ENST00000457422 MRPL35Q9NZE8 188 aaKnown RBP12.36□□□□□ -0.43
CCDC43-202ENST00000457422 PEMTQ9UBM1 199 aa12.36□□□□□ -0.43
CCDC43-202ENST00000457422 TLN2Q9Y4G6 2542 aa12.36□□□□□ -0.43
CCDC43-202ENST00000457422 TAX1BP3O14907 124 aa12.35□□□□□ -0.43
CCDC43-202ENST00000457422 Q8N1Y9 231 aa12.35□□□□□ -0.43
CCDC43-202ENST00000457422 AKAP9Q99996 3911 aa12.35□□□□□ -0.43
CCDC43-202ENST00000457422 HLA-DRB4P13762 266 aa12.34□□□□□ -0.43
CCDC43-202ENST00000457422 SEC11AP67812 179 aa12.34□□□□□ -0.43
CCDC43-202ENST00000457422 HIST2H2BDQ6DRA6 164 aa12.34□□□□□ -0.43
CCDC43-202ENST00000457422 SYT8Q8NBV8 401 aa12.34□□□□□ -0.43
CCDC43-202ENST00000457422 CSTL1Q9H114 145 aa12.34□□□□□ -0.43
CCDC43-202ENST00000457422 MDFICQ9P1T7 246 aa12.34□□□□□ -0.43
CCDC43-202ENST00000457422 HLA-DRB4X5D2U9 266 aa12.34□□□□□ -0.43
CCDC43-202ENST00000457422 MYO9AB2RTY4 2548 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms