RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 SIVA1O15304 175 aa11.29□□□□□ -0.6
LDLR-202ENST00000455727 PRSS1P07477 247 aa11.29□□□□□ -0.6
LDLR-202ENST00000455727 SNRPD3P62318 126 aaKnown RBP11.29□□□□□ -0.6
LDLR-202ENST00000455727 AP1S3Q96PC3 154 aa11.29□□□□□ -0.6
LDLR-202ENST00000455727 PPP1R17O96001 155 aa11.28□□□□□ -0.6
LDLR-202ENST00000455727 SUMO2P61956 95 aaKnown RBP11.28□□□□□ -0.6
LDLR-202ENST00000455727 FAM159AQ6UWV7 190 aa11.28□□□□□ -0.6
LDLR-202ENST00000455727 C14orf178Q8N769 122 aaPredicted RBP11.28□□□□□ -0.6
LDLR-202ENST00000455727 RASL10AQ92737 203 aa11.28□□□□□ -0.6
LDLR-202ENST00000455727 SELENOKQ9Y6D0 94 aa11.28□□□□□ -0.6
LDLR-202ENST00000455727 HOXA3O43365 443 aaPredicted RBP11.27□□□□□ -0.6
LDLR-202ENST00000455727 Q5PR19 223 aa11.27□□□□□ -0.6
LDLR-202ENST00000455727 OR9G4Q8NGQ1 327 aa11.27□□□□□ -0.6
LDLR-202ENST00000455727 HHLA3Q9XRX5 114 aa11.27□□□□□ -0.6
LDLR-202ENST00000455727 ZANQ9Y493 2812 aa11.27□□□□□ -0.61
LDLR-202ENST00000455727 ORMDL2Q53FV1 153 aa11.27□□□□□ -0.61
LDLR-202ENST00000455727 CBY1Q9Y3M2 126 aa11.27□□□□□ -0.61
LDLR-202ENST00000455727 MUC4Q99102 2169 aa11.27□□□□□ -0.61
LDLR-202ENST00000455727 IGHV4OR15-8A0A075B7B6 117 aa11.26□□□□□ -0.61
LDLR-202ENST00000455727 A0A087WW49 117 aa11.26□□□□□ -0.61
LDLR-202ENST00000455727 A0A0J9YX75 114 aa11.26□□□□□ -0.61
LDLR-202ENST00000455727 SYNJ2BPP57105 145 aa11.26□□□□□ -0.61
LDLR-202ENST00000455727 Q8N2B8 174 aa11.26□□□□□ -0.61
LDLR-202ENST00000455727 POLQO75417 2590 aa11.26□□□□□ -0.61
LDLR-202ENST00000455727 C7orf71A4D174 169 aa11.26□□□□□ -0.61
LDLR-202ENST00000455727 ZNF688P0C7X2 276 aa11.26□□□□□ -0.61
LDLR-202ENST00000455727 KIF25-AS1Q9Y6Z4 181 aa11.26□□□□□ -0.61
LDLR-202ENST00000455727 SPRY2O43597 315 aa11.25□□□□□ -0.61
LDLR-202ENST00000455727 IGKCP01834 107 aa11.25□□□□□ -0.61
LDLR-202ENST00000455727 HOXD3P31249 432 aaPredicted RBP11.25□□□□□ -0.61
LDLR-202ENST00000455727 FOXC2Q99958 501 aa11.25□□□□□ -0.61
LDLR-202ENST00000455727 DPM2O94777 84 aa11.25□□□□□ -0.61
LDLR-202ENST00000455727 PTPN13Q12923 2485 aa11.25□□□□□ -0.61
LDLR-202ENST00000455727 LINC00315P59091 139 aa11.24□□□□□ -0.61
LDLR-202ENST00000455727 SEC11AP67812 179 aa11.24□□□□□ -0.61
LDLR-202ENST00000455727 TMEM97Q5BJF2 176 aa11.24□□□□□ -0.61
LDLR-202ENST00000455727 TRAV12-3A0A0B4J271 114 aa11.24□□□□□ -0.61
LDLR-202ENST00000455727 TAX1BP3O14907 124 aa11.24□□□□□ -0.61
LDLR-202ENST00000455727 RPL39LQ96EH5 51 aaKnown RBP11.24□□□□□ -0.61
LDLR-202ENST00000455727 CENPEQ02224 2701 aa11.24□□□□□ -0.61
LDLR-202ENST00000455727 MXRA5Q9NR99 2828 aa11.23□□□□□ -0.61
LDLR-202ENST00000455727 A0A087WX48 190 aa11.23□□□□□ -0.61
LDLR-202ENST00000455727 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.23□□□□□ -0.61
LDLR-202ENST00000455727 DUSP14O95147 198 aaKnown RBP11.23□□□□□ -0.61
LDLR-202ENST00000455727 MGPP08493 103 aa11.23□□□□□ -0.61
LDLR-202ENST00000455727 RPL32P62910 135 aaKnown RBP11.23□□□□□ -0.61
LDLR-202ENST00000455727 TOMM6Q96B49 74 aa11.23□□□□□ -0.61
LDLR-202ENST00000455727 DOPEY2Q9Y3R5 2298 aa11.23□□□□□ -0.61
LDLR-202ENST00000455727 TRAV12-1A0A0B4J245 112 aa11.23□□□□□ -0.61
LDLR-202ENST00000455727 CD7P09564 240 aa11.23□□□□□ -0.61
LDLR-202ENST00000455727 NMUP48645 174 aa11.23□□□□□ -0.61
LDLR-202ENST00000455727 Q96MF0 132 aa11.23□□□□□ -0.61
LDLR-202ENST00000455727 VAMP3Q15836 100 aa11.22□□□□□ -0.61
LDLR-202ENST00000455727 PCP2Q8IVA1 136 aa11.22□□□□□ -0.61
LDLR-202ENST00000455727 HLA-DRB4P13762 266 aa11.21□□□□□ -0.61
LDLR-202ENST00000455727 CDKN1BP46527 198 aa11.21□□□□□ -0.61
LDLR-202ENST00000455727 FOXI2Q6ZQN5 318 aa11.21□□□□□ -0.61
LDLR-202ENST00000455727 C9orf85Q96MD7 179 aa11.21□□□□□ -0.61
LDLR-202ENST00000455727 HLA-DRB4X5D2U9 266 aa11.21□□□□□ -0.61
LDLR-202ENST00000455727 K7EP13 123 aa11.21□□□□□ -0.62
LDLR-202ENST00000455727 HSD52Q0P140 79 aa11.21□□□□□ -0.62
LDLR-202ENST00000455727 ADAMTSL5Q6ZMM2 481 aa11.21□□□□□ -0.62
LDLR-202ENST00000455727 KRTAP1-3Q8IUG1 177 aa11.21□□□□□ -0.62
LDLR-202ENST00000455727 WFDC12Q8WWY7 111 aa11.21□□□□□ -0.62
LDLR-202ENST00000455727 MRPL35Q9NZE8 188 aaKnown RBP11.21□□□□□ -0.62
LDLR-202ENST00000455727 NAV2Q8IVL1 2488 aa11.21□□□□□ -0.62
LDLR-202ENST00000455727 IGHV3-16A0A0C4DH30 117 aa11.2□□□□□ -0.62
LDLR-202ENST00000455727 PLNP26678 52 aa11.2□□□□□ -0.62
LDLR-202ENST00000455727 OR4C5Q8NGB2 326 aa11.2□□□□□ -0.62
LDLR-202ENST00000455727 TCTEX1D4Q5JR98 221 aa11.2□□□□□ -0.62
LDLR-202ENST00000455727 RNASE8Q8TDE3 154 aaKnown RBP11.2□□□□□ -0.62
LDLR-202ENST00000455727 HIGD1BQ9P298 99 aa11.2□□□□□ -0.62
LDLR-202ENST00000455727 IGKV2D-26A0A0A0MRZ7 120 aa11.19□□□□□ -0.62
LDLR-202ENST00000455727 ZC2HC1BQ5TFG8 222 aa11.19□□□□□ -0.62
LDLR-202ENST00000455727 DUX5Q96PT3 197 aa11.19□□□□□ -0.62
LDLR-202ENST00000455727 SCGB3A1Q96QR1 104 aa11.19□□□□□ -0.62
LDLR-202ENST00000455727 TEX15Q9BXT5 2789 aa11.19□□□□□ -0.62
LDLR-202ENST00000455727 IGHV1OR15-1A0A075B7D0 117 aa11.19□□□□□ -0.62
LDLR-202ENST00000455727 LINC01549A6NIU2 74 aa11.19□□□□□ -0.62
LDLR-202ENST00000455727 H7C1H1 209 aa11.19□□□□□ -0.62
LDLR-202ENST00000455727 TCTAP57738 103 aa11.19□□□□□ -0.62
LDLR-202ENST00000455727 TMEM86BQ8N661 226 aa11.19□□□□□ -0.62
LDLR-202ENST00000455727 CREBBPQ92793 2442 aa11.19□□□□□ -0.62
LDLR-202ENST00000455727 CSTL1Q9H114 145 aa11.19□□□□□ -0.62
LDLR-202ENST00000455727 TMEM160Q9NX00 188 aa11.19□□□□□ -0.62
LDLR-202ENST00000455727 F8VRH5 84 aa11.18□□□□□ -0.62
LDLR-202ENST00000455727 AMTNQ6UX39 209 aa11.18□□□□□ -0.62
LDLR-202ENST00000455727 ERASQ7Z444 233 aa11.18□□□□□ -0.62
LDLR-202ENST00000455727 SYT8Q8NBV8 401 aa11.18□□□□□ -0.62
LDLR-202ENST00000455727 AGRNO00468 2067 aa11.18□□□□□ -0.62
LDLR-202ENST00000455727 ABCA12Q86UK0 2595 aa11.18□□□□□ -0.62
LDLR-202ENST00000455727 TRAV12-2A0A075B6T6 113 aa11.18□□□□□ -0.62
LDLR-202ENST00000455727 TRAV2A0A0B4J234 112 aa11.18□□□□□ -0.62
LDLR-202ENST00000455727 CBY3A6NI87 242 aa11.18□□□□□ -0.62
LDLR-202ENST00000455727 IGKV3-20P01619 116 aa11.18□□□□□ -0.62
LDLR-202ENST00000455727 POLR2KP53803 58 aaKnown RBP11.18□□□□□ -0.62
LDLR-202ENST00000455727 C2orf66Q6UXQ4 117 aa11.18□□□□□ -0.62
LDLR-202ENST00000455727 TEX29Q8N6K0 151 aa11.18□□□□□ -0.62
LDLR-202ENST00000455727 NEXN-AS1Q8NBZ9 246 aa11.18□□□□□ -0.62
LDLR-202ENST00000455727 A6NDN8 102 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms