RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 ZC2HC1AQ96GY0 325 aa14.48□□□□□ -0.09
HMGB3-205ENST00000455596 PRADC1Q9BSG0 188 aa14.48□□□□□ -0.09
HMGB3-205ENST00000455596 TRAV9-2A0A087WT02 112 aa14.47□□□□□ -0.09
HMGB3-205ENST00000455596 TRBV6-4A0A1B0GX49 114 aa14.47□□□□□ -0.09
HMGB3-205ENST00000455596 B4DEV8 164 aa14.47□□□□□ -0.09
HMGB3-205ENST00000455596 WFDC10BQ8IUB3 73 aa14.47□□□□□ -0.09
HMGB3-205ENST00000455596 SLC25A29Q8N8R3 303 aa14.47□□□□□ -0.09
HMGB3-205ENST00000455596 SFT2D1Q8WV19 159 aa14.47□□□□□ -0.09
HMGB3-205ENST00000455596 MBD3L1Q8WWY6 194 aa14.47□□□□□ -0.09
HMGB3-205ENST00000455596 IGHV3-73A0A0B4J1V6 119 aa14.46□□□□□ -0.09
HMGB3-205ENST00000455596 TRBV6-1A0A0K0K1D8 114 aa14.46□□□□□ -0.09
HMGB3-205ENST00000455596 PAGE4O60829 102 aa14.46□□□□□ -0.09
HMGB3-205ENST00000455596 AKR1C3P42330 323 aa14.46□□□□□ -0.09
HMGB3-205ENST00000455596 RHOHQ15669 191 aa14.46□□□□□ -0.09
HMGB3-205ENST00000455596 COX8CQ7Z4L0 72 aa14.46□□□□□ -0.09
HMGB3-205ENST00000455596 K7EP13 123 aa14.45□□□□□ -0.1
HMGB3-205ENST00000455596 PFDN1O60925 122 aa14.45□□□□□ -0.1
HMGB3-205ENST00000455596 MGST1P10620 155 aaKnown RBP14.45□□□□□ -0.1
HMGB3-205ENST00000455596 CRIP1P50238 77 aa14.45□□□□□ -0.1
HMGB3-205ENST00000455596 PIK3CD-AS1Q5SR53 167 aa14.45□□□□□ -0.1
HMGB3-205ENST00000455596 FAM162BQ5T6X4 162 aa14.45□□□□□ -0.1
HMGB3-205ENST00000455596 TMUB2Q71RG4 321 aa14.45□□□□□ -0.1
HMGB3-205ENST00000455596 IL36BQ9NZH7 164 aa14.45□□□□□ -0.1
HMGB3-205ENST00000455596 PKHD1P08F94 4074 aa14.45□□□□□ -0.1
HMGB3-205ENST00000455596 A0A1B0GV50 99 aa14.44□□□□□ -0.1
HMGB3-205ENST00000455596 A8MWV9 139 aa14.44□□□□□ -0.1
HMGB3-205ENST00000455596 SH2D1AO60880 128 aa14.44□□□□□ -0.1
HMGB3-205ENST00000455596 LTAP01374 205 aa14.44□□□□□ -0.1
HMGB3-205ENST00000455596 EVI2AP22794 236 aa14.44□□□□□ -0.1
HMGB3-205ENST00000455596 Q6ZRN7 208 aaPredicted RBP14.44□□□□□ -0.1
HMGB3-205ENST00000455596 SPATA12Q7Z6I5 190 aa14.44□□□□□ -0.1
HMGB3-205ENST00000455596 KRBOX1C9JBD0 128 aa14.43□□□□□ -0.1
HMGB3-205ENST00000455596 M0R036 132 aa14.43□□□□□ -0.1
HMGB3-205ENST00000455596 DNAH10OSP0CZ25 163 aa14.43□□□□□ -0.1
HMGB3-205ENST00000455596 TPT1P13693 172 aaKnown RBP14.43□□□□□ -0.1
HMGB3-205ENST00000455596 TIRAPP58753 221 aa14.43□□□□□ -0.1
HMGB3-205ENST00000455596 LGALSLQ3ZCW2 172 aaPredicted RBP14.43□□□□□ -0.1
HMGB3-205ENST00000455596 DNLZQ5SXM8 178 aa14.43□□□□□ -0.1
HMGB3-205ENST00000455596 NFE4Q86UQ8 179 aa14.43□□□□□ -0.1
HMGB3-205ENST00000455596 PARLQ9H300 379 aa14.43□□□□□ -0.1
HMGB3-205ENST00000455596 H3BVH4 76 aa14.42□□□□□ -0.1
HMGB3-205ENST00000455596 H2AFB1P0C5Y9 115 aa14.42□□□□□ -0.1
HMGB3-205ENST00000455596 ZNF674Q2M3X9 581 aa14.42□□□□□ -0.1
HMGB3-205ENST00000455596 ZFP2Q6ZN57 461 aa14.42□□□□□ -0.1
HMGB3-205ENST00000455596 S100A9P06702 114 aaKnown RBP14.41□□□□□ -0.1
HMGB3-205ENST00000455596 SYT8Q8NBV8 401 aa14.41□□□□□ -0.1
HMGB3-205ENST00000455596 TNFRSF18Q9Y5U5 241 aa14.41□□□□□ -0.1
HMGB3-205ENST00000455596 KIAA1109Q2LD37 5005 aa14.41□□□□□ -0.1
HMGB3-205ENST00000455596 ARMS2P0C7Q2 107 aa14.4□□□□□ -0.1
HMGB3-205ENST00000455596 LINC01559Q495D7 138 aa14.4□□□□□ -0.1
HMGB3-205ENST00000455596 MSRB1Q9NZV6 116 aa14.4□□□□□ -0.1
HMGB3-205ENST00000455596 HERC2O95714 4834 aa14.39□□□□□ -0.11
HMGB3-205ENST00000455596 SCO2A0A1W2PP80 73 aa14.39□□□□□ -0.11
HMGB3-205ENST00000455596 GRIFINA4D1Z8 144 aa14.39□□□□□ -0.11
HMGB3-205ENST00000455596 C10orf126Q8N4M7 172 aa14.39□□□□□ -0.11
HMGB3-205ENST00000455596 BOLA1Q9Y3E2 137 aa14.39□□□□□ -0.11
HMGB3-205ENST00000455596 TRAV8-6A0A0B4J262 113 aa14.38□□□□□ -0.11
HMGB3-205ENST00000455596 IGHV3-38A0A0C4DH36 116 aa14.38□□□□□ -0.11
HMGB3-205ENST00000455596 CRYGDP07320 174 aa14.38□□□□□ -0.11
HMGB3-205ENST00000455596 DMRTA1Q5VZB9 504 aa14.38□□□□□ -0.11
HMGB3-205ENST00000455596 ATP6V0E2Q8NHE4 81 aa14.38□□□□□ -0.11
HMGB3-205ENST00000455596 JPT2Q9H910 190 aa14.38□□□□□ -0.11
HMGB3-205ENST00000455596 TMSB15BA0A087X1C1 80 aa14.37□□□□□ -0.11
HMGB3-205ENST00000455596 EREGO14944 169 aa14.37□□□□□ -0.11
HMGB3-205ENST00000455596 KRTAP10-2P60368 255 aa14.37□□□□□ -0.11
HMGB3-205ENST00000455596 ERVFC1-1P60608 527 aa14.37□□□□□ -0.11
HMGB3-205ENST00000455596 OR10J3Q5JRS4 329 aa14.37□□□□□ -0.11
HMGB3-205ENST00000455596 Q6ZSN1 163 aa14.37□□□□□ -0.11
HMGB3-205ENST00000455596 PHLDA3Q9Y5J5 127 aa14.37□□□□□ -0.11
HMGB3-205ENST00000455596 RHODO00212 210 aa14.36□□□□□ -0.11
HMGB3-205ENST00000455596 LELP1Q5T871 98 aa14.36□□□□□ -0.11
HMGB3-205ENST00000455596 EIF5AL1Q6IS14 154 aaKnown RBP14.36□□□□□ -0.11
HMGB3-205ENST00000455596 SAMD10Q9BYL1 202 aa14.36□□□□□ -0.11
HMGB3-205ENST00000455596 GTSF1LQ9H1H1 148 aa14.36□□□□□ -0.11
HMGB3-205ENST00000455596 CDK2AP2O75956 126 aa14.35□□□□□ -0.11
HMGB3-205ENST00000455596 RAB5CP51148 216 aa14.35□□□□□ -0.11
HMGB3-205ENST00000455596 LINC01556Q5JQF7 62 aa14.35□□□□□ -0.11
HMGB3-205ENST00000455596 UFSP1Q6NVU6 142 aa14.35□□□□□ -0.11
HMGB3-205ENST00000455596 BAGE2Q86Y30 109 aa14.35□□□□□ -0.11
HMGB3-205ENST00000455596 TCTE3Q8IZS6 198 aa14.35□□□□□ -0.11
HMGB3-205ENST00000455596 SCRT2Q9NQ03 307 aa14.35□□□□□ -0.11
HMGB3-205ENST00000455596 MANBALQ9NQG1 85 aa14.35□□□□□ -0.11
HMGB3-205ENST00000455596 GAGE12JA6NER3 117 aa14.34□□□□□ -0.11
HMGB3-205ENST00000455596 M0R381 172 aa14.34□□□□□ -0.11
HMGB3-205ENST00000455596 GAGE1Q13065 139 aa14.34□□□□□ -0.11
HMGB3-205ENST00000455596 GAGE4Q13068 117 aa14.34□□□□□ -0.11
HMGB3-205ENST00000455596 GAGE5Q13069 117 aa14.34□□□□□ -0.11
HMGB3-205ENST00000455596 GAGE13Q4V321 117 aa14.34□□□□□ -0.11
HMGB3-205ENST00000455596 KRTAP17-1Q9BYP8 105 aa14.34□□□□□ -0.11
HMGB3-205ENST00000455596 DNAH11Q96DT5 4516 aa14.34□□□□□ -0.11
HMGB3-205ENST00000455596 FAM74A4Q5TZK3 123 aa14.33□□□□□ -0.12
HMGB3-205ENST00000455596 ZFP82Q8N141 532 aa14.33□□□□□ -0.12
HMGB3-205ENST00000455596 SFRP2Q96HF1 295 aa14.33□□□□□ -0.12
HMGB3-205ENST00000455596 MLST8Q9BVC4 326 aa14.33□□□□□ -0.12
HMGB3-205ENST00000455596 GNG13Q9P2W3 67 aa14.33□□□□□ -0.12
HMGB3-205ENST00000455596 TRAV1-1A0A0B4J248 108 aa14.32□□□□□ -0.12
HMGB3-205ENST00000455596 TEX46H3BTG2 121 aa14.32□□□□□ -0.12
HMGB3-205ENST00000455596 LINC00694P0DN24 101 aa14.32□□□□□ -0.12
HMGB3-205ENST00000455596 C14orf178Q8N769 122 aaPredicted RBP14.32□□□□□ -0.12
HMGB3-205ENST00000455596 DYNC1H1Q14204 4646 aaKnown RBP14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 101.3 ms