RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 CT83Q5H943 113 aa8.27□□□□□ -1.09
SCN9A-204ENST00000452182 FAM222AQ5U5X8 452 aa8.27□□□□□ -1.09
SCN9A-204ENST00000452182 LINC00612Q8N6U2 182 aa8.27□□□□□ -1.09
SCN9A-204ENST00000452182 C15orf54Q8N8G6 183 aa8.27□□□□□ -1.09
SCN9A-204ENST00000452182 SFRP2Q96HF1 295 aa8.27□□□□□ -1.09
SCN9A-204ENST00000452182 NOP10Q9NPE3 64 aaKnown RBP8.27□□□□□ -1.09
SCN9A-204ENST00000452182 STAB2Q8WWQ8 2551 aa8.26□□□□□ -1.09
SCN9A-204ENST00000452182 TMSB15BA0A087X1C1 80 aa8.26□□□□□ -1.09
SCN9A-204ENST00000452182 SPINK4O60575 86 aa8.26□□□□□ -1.09
SCN9A-204ENST00000452182 S100A4P26447 101 aaKnown RBP8.26□□□□□ -1.09
SCN9A-204ENST00000452182 PTH2Q96A98 100 aa8.26□□□□□ -1.09
SCN9A-204ENST00000452182 NDUFAF3Q9BU61 184 aa8.26□□□□□ -1.09
SCN9A-204ENST00000452182 SCRT2Q9NQ03 307 aa8.26□□□□□ -1.09
SCN9A-204ENST00000452182 CARHSP1Q9Y2V2 147 aaKnown RBP8.26□□□□□ -1.09
SCN9A-204ENST00000452182 GRIFINA4D1Z8 144 aa8.25□□□□□ -1.09
SCN9A-204ENST00000452182 CXorf65A6NEN9 183 aa8.25□□□□□ -1.09
SCN9A-204ENST00000452182 GATCO43716 136 aaKnown RBP8.25□□□□□ -1.09
SCN9A-204ENST00000452182 OR5AL1P0C617 328 aa8.25□□□□□ -1.09
SCN9A-204ENST00000452182 ARMS2P0C7Q2 107 aa8.25□□□□□ -1.09
SCN9A-204ENST00000452182 PIK3CD-AS1Q5SR53 167 aa8.25□□□□□ -1.09
SCN9A-204ENST00000452182 C11orf45Q8TAV5 145 aa8.25□□□□□ -1.09
SCN9A-204ENST00000452182 RASL10AQ92737 203 aa8.25□□□□□ -1.09
SCN9A-204ENST00000452182 C18orf15Q96N68 181 aa8.25□□□□□ -1.09
SCN9A-204ENST00000452182 CELA1Q9UNI1 258 aa8.25□□□□□ -1.09
SCN9A-204ENST00000452182 A8MWL6 223 aa8.25□□□□□ -1.09
SCN9A-204ENST00000452182 H3BVH4 76 aa8.25□□□□□ -1.09
SCN9A-204ENST00000452182 M0R2P5 195 aa8.25□□□□□ -1.09
SCN9A-204ENST00000452182 SNAI2O43623 268 aa8.25□□□□□ -1.09
SCN9A-204ENST00000452182 IGLC6P0CF74 106 aa8.25□□□□□ -1.09
SCN9A-204ENST00000452182 OR10G8Q8NGN5 311 aa8.25□□□□□ -1.09
SCN9A-204ENST00000452182 V9GYV3 84 aa8.25□□□□□ -1.09
SCN9A-204ENST00000452182 A0A1W2PPQ1 181 aa8.24□□□□□ -1.09
SCN9A-204ENST00000452182 FAM231BA6NCW3 169 aa8.24□□□□□ -1.09
SCN9A-204ENST00000452182 Q6ZTI0 123 aa8.24□□□□□ -1.09
SCN9A-204ENST00000452182 GFRA4Q9GZZ7 299 aa8.24□□□□□ -1.09
SCN9A-204ENST00000452182 MUC4Q99102 2169 aa8.23□□□□□ -1.09
SCN9A-204ENST00000452182 TRGV1A0A0A0MS02 117 aa8.23□□□□□ -1.09
SCN9A-204ENST00000452182 F2Z2F3 143 aa8.23□□□□□ -1.09
SCN9A-204ENST00000452182 PPP1R2P9O14990 202 aa8.23□□□□□ -1.09
SCN9A-204ENST00000452182 FOXA3P55318 350 aaPredicted RBP8.23□□□□□ -1.09
SCN9A-204ENST00000452182 C12orf74Q32Q52 190 aa8.23□□□□□ -1.09
SCN9A-204ENST00000452182 ZNF876PQ49A33 203 aa8.23□□□□□ -1.09
SCN9A-204ENST00000452182 SLC7A5P1Q8MH63 180 aa8.23□□□□□ -1.09
SCN9A-204ENST00000452182 TSKUQ8WUA8 353 aa8.23□□□□□ -1.09
SCN9A-204ENST00000452182 PHLDA3Q9Y5J5 127 aa8.23□□□□□ -1.09
SCN9A-204ENST00000452182 GZMBP10144 247 aa8.22□□□□□ -1.09
SCN9A-204ENST00000452182 DAD1P61803 113 aa8.22□□□□□ -1.09
SCN9A-204ENST00000452182 FER1L6-AS1Q8NA97 138 aa8.22□□□□□ -1.09
SCN9A-204ENST00000452182 GTSF1Q8WW33 167 aa8.22□□□□□ -1.09
SCN9A-204ENST00000452182 WWC2-AS2Q96NR7 200 aa8.22□□□□□ -1.09
SCN9A-204ENST00000452182 MRPL16Q9NX20 251 aaKnown RBP8.22□□□□□ -1.09
SCN9A-204ENST00000452182 DNAH7Q8WXX0 4024 aa8.22□□□□□ -1.09
SCN9A-204ENST00000452182 GAGE12BA1L429 117 aa8.21□□□□□ -1.09
SCN9A-204ENST00000452182 GAGE7O76087 117 aa8.21□□□□□ -1.09
SCN9A-204ENST00000452182 NXPH4O95158 308 aa8.21□□□□□ -1.09
SCN9A-204ENST00000452182 MT-ND4LP03901 98 aa8.21□□□□□ -1.09
SCN9A-204ENST00000452182 GAGE12FP0CL80 117 aa8.21□□□□□ -1.09
SCN9A-204ENST00000452182 GAGE12GP0CL81 117 aa8.21□□□□□ -1.09
SCN9A-204ENST00000452182 GAGE12IP0CL82 117 aa8.21□□□□□ -1.09
SCN9A-204ENST00000452182 DEFB130BP0DP73 79 aa8.21□□□□□ -1.09
SCN9A-204ENST00000452182 DEFB130AP0DP74 79 aa8.21□□□□□ -1.09
SCN9A-204ENST00000452182 CTRLP40313 264 aa8.21□□□□□ -1.09
SCN9A-204ENST00000452182 NANOS2P60321 138 aaKnown RBP8.21□□□□□ -1.09
SCN9A-204ENST00000452182 ZFP82Q8N141 532 aa8.21□□□□□ -1.09
SCN9A-204ENST00000452182 SYT8Q8NBV8 401 aa8.21□□□□□ -1.09
SCN9A-204ENST00000452182 CNFNQ9BYD5 112 aa8.21□□□□□ -1.09
SCN9A-204ENST00000452182 IGHV4-4A0A075B6R2 117 aa8.21□□□□□ -1.1
SCN9A-204ENST00000452182 RNF212Q495C1 297 aa8.21□□□□□ -1.1
SCN9A-204ENST00000452182 WDR73Q6P4I2 378 aa8.21□□□□□ -1.1
SCN9A-204ENST00000452182 OR10AG1Q8NH19 301 aa8.21□□□□□ -1.1
SCN9A-204ENST00000452182 TRGV2A0A075B6R0 118 aa8.2□□□□□ -1.1
SCN9A-204ENST00000452182 SMIM27A0A1W2PRY6 76 aa8.2□□□□□ -1.1
SCN9A-204ENST00000452182 CIDEAO60543 219 aa8.2□□□□□ -1.1
SCN9A-204ENST00000452182 CACNG7P62955 275 aa8.2□□□□□ -1.1
SCN9A-204ENST00000452182 LYZL1Q6UWQ5 148 aa8.2□□□□□ -1.1
SCN9A-204ENST00000452182 Q6ZTC4 211 aa8.2□□□□□ -1.1
SCN9A-204ENST00000452182 SVBPQ8N300 66 aa8.2□□□□□ -1.1
SCN9A-204ENST00000452182 TRAV4A0A0B4J268 109 aa8.19□□□□□ -1.1
SCN9A-204ENST00000452182 HIGD1CA8MV81 97 aa8.19□□□□□ -1.1
SCN9A-204ENST00000452182 A8MWV9 139 aa8.19□□□□□ -1.1
SCN9A-204ENST00000452182 APOC3P02656 99 aa8.19□□□□□ -1.1
SCN9A-204ENST00000452182 ATP5G1P05496 136 aa8.19□□□□□ -1.1
SCN9A-204ENST00000452182 SPANXN1Q5VSR9 72 aa8.19□□□□□ -1.1
SCN9A-204ENST00000452182 TPPP3Q9BW30 176 aa8.19□□□□□ -1.1
SCN9A-204ENST00000452182 CTDSP1Q9GZU7 261 aa8.19□□□□□ -1.1
SCN9A-204ENST00000452182 TMEM242Q9NWH2 141 aa8.19□□□□□ -1.1
SCN9A-204ENST00000452182 NAT8BQ9UHF3 227 aa8.19□□□□□ -1.1
SCN9A-204ENST00000452182 M0R381 172 aa8.18□□□□□ -1.1
SCN9A-204ENST00000452182 RHEBQ15382 184 aa8.18□□□□□ -1.1
SCN9A-204ENST00000452182 POM121L12Q8N7R1 296 aa8.18□□□□□ -1.1
SCN9A-204ENST00000452182 CLRN3Q8NCR9 226 aa8.18□□□□□ -1.1
SCN9A-204ENST00000452182 A0A087WWC5 75 aa8.18□□□□□ -1.1
SCN9A-204ENST00000452182 TRAV10A0A0B4J240 114 aa8.18□□□□□ -1.1
SCN9A-204ENST00000452182 RS1O15537 224 aa8.18□□□□□ -1.1
SCN9A-204ENST00000452182 SNAPINO95295 136 aa8.18□□□□□ -1.1
SCN9A-204ENST00000452182 CFAP126Q5VTH2 177 aa8.18□□□□□ -1.1
SCN9A-204ENST00000452182 NUP35Q8NFH5 326 aa8.18□□□□□ -1.1
SCN9A-204ENST00000452182 OR4C5Q8NGB2 326 aa8.18□□□□□ -1.1
SCN9A-204ENST00000452182 IMMP2LQ96T52 175 aa8.18□□□□□ -1.1
SCN9A-204ENST00000452182 C7orf77A4D0Y5 90 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms