RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 C19orf73Q9NVV2 129 aa10.48□□□□□ -0.73
USP39-207ENST00000450066 AMBPP02760 352 aa10.47□□□□□ -0.73
USP39-207ENST00000450066 RBMY1A1P0DJD3 496 aaKnown RBP10.47□□□□□ -0.73
USP39-207ENST00000450066 RBMY1CP0DJD4 496 aa10.47□□□□□ -0.73
USP39-207ENST00000450066 FABP4P15090 132 aa10.47□□□□□ -0.73
USP39-207ENST00000450066 RBMY1FQ15415 496 aaKnown RBP10.47□□□□□ -0.73
USP39-207ENST00000450066 SMIM15Q7Z3B0 74 aa10.47□□□□□ -0.73
USP39-207ENST00000450066 Q8N1Y9 231 aa10.47□□□□□ -0.73
USP39-207ENST00000450066 U3KQK5 164 aa10.47□□□□□ -0.73
USP39-207ENST00000450066 IGHV3-16A0A0C4DH30 117 aa10.46□□□□□ -0.73
USP39-207ENST00000450066 IQCJQ1A5X6 159 aa10.46□□□□□ -0.73
USP39-207ENST00000450066 MRPL51Q4U2R6 128 aaKnown RBP10.46□□□□□ -0.73
USP39-207ENST00000450066 RCHY1Q96PM5 261 aa10.46□□□□□ -0.73
USP39-207ENST00000450066 C20orf144Q9BQM9 153 aa10.46□□□□□ -0.73
USP39-207ENST00000450066 TRRAPQ9Y4A5 3859 aa10.46□□□□□ -0.74
USP39-207ENST00000450066 M0R381 172 aa10.46□□□□□ -0.74
USP39-207ENST00000450066 NXPH4O95158 308 aa10.46□□□□□ -0.74
USP39-207ENST00000450066 INSP01308 110 aa10.46□□□□□ -0.74
USP39-207ENST00000450066 RAB4AP20338 218 aa10.46□□□□□ -0.74
USP39-207ENST00000450066 EVI2AP22794 236 aa10.46□□□□□ -0.74
USP39-207ENST00000450066 NUTF2P61970 127 aaKnown RBP10.46□□□□□ -0.74
USP39-207ENST00000450066 ORMDL3Q8N138 153 aa10.46□□□□□ -0.74
USP39-207ENST00000450066 SPATA3Q8NHX4 192 aa10.46□□□□□ -0.74
USP39-207ENST00000450066 TMEM18Q96B42 140 aa10.46□□□□□ -0.74
USP39-207ENST00000450066 RNF185Q96GF1 192 aa10.46□□□□□ -0.74
USP39-207ENST00000450066 TRGV11A0A075B6L2 103 aa10.45□□□□□ -0.74
USP39-207ENST00000450066 D6R8Y8 96 aa10.45□□□□□ -0.74
USP39-207ENST00000450066 WFDC9Q8NEX5 89 aa10.45□□□□□ -0.74
USP39-207ENST00000450066 C9orf85Q96MD7 179 aa10.45□□□□□ -0.74
USP39-207ENST00000450066 ZNF747Q9BV97 191 aa10.45□□□□□ -0.74
USP39-207ENST00000450066 PRIMA1Q86XR5 153 aa10.45□□□□□ -0.74
USP39-207ENST00000450066 PACRGQ96M98 296 aaPredicted RBP10.45□□□□□ -0.74
USP39-207ENST00000450066 MCRIP2Q9BUT9 160 aaKnown RBP10.45□□□□□ -0.74
USP39-207ENST00000450066 MDFICQ9P1T7 246 aa10.45□□□□□ -0.74
USP39-207ENST00000450066 CBY3A6NI87 242 aa10.44□□□□□ -0.74
USP39-207ENST00000450066 SPRY2O43597 315 aa10.44□□□□□ -0.74
USP39-207ENST00000450066 PPBPP02775 128 aa10.44□□□□□ -0.74
USP39-207ENST00000450066 CKS2P33552 79 aa10.44□□□□□ -0.74
USP39-207ENST00000450066 OR10D4PQ8NGN7 298 aa10.44□□□□□ -0.74
USP39-207ENST00000450066 LINC00467Q9BRT7 94 aa10.44□□□□□ -0.74
USP39-207ENST00000450066 PRELID3AQ96N28 172 aa10.43□□□□□ -0.74
USP39-207ENST00000450066 NIT1Q86X76 327 aa10.43□□□□□ -0.74
USP39-207ENST00000450066 WFDC10AQ9H1F0 79 aa10.43□□□□□ -0.74
USP39-207ENST00000450066 XCL2Q9UBD3 114 aa10.43□□□□□ -0.74
USP39-207ENST00000450066 GTSCR1Q86UQ5 136 aa10.42□□□□□ -0.74
USP39-207ENST00000450066 AP1S3Q96PC3 154 aa10.42□□□□□ -0.74
USP39-207ENST00000450066 LINC01587Q99440 93 aa10.42□□□□□ -0.74
USP39-207ENST00000450066 SAMD10Q9BYL1 202 aa10.42□□□□□ -0.74
USP39-207ENST00000450066 DPH3P1Q9H4G8 78 aa10.42□□□□□ -0.74
USP39-207ENST00000450066 LAMTOR2Q9Y2Q5 125 aa10.42□□□□□ -0.74
USP39-207ENST00000450066 NOTCH3Q9UM47 2321 aa10.41□□□□□ -0.74
USP39-207ENST00000450066 MUC4Q99102 2169 aa10.41□□□□□ -0.74
USP39-207ENST00000450066 HTN1P15515 57 aa10.41□□□□□ -0.74
USP39-207ENST00000450066 RNASEKQ6P5S7 137 aaKnown RBP10.41□□□□□ -0.74
USP39-207ENST00000450066 LINC00518Q8N0U6 118 aa10.41□□□□□ -0.74
USP39-207ENST00000450066 C3orf56Q8N813 242 aa10.41□□□□□ -0.74
USP39-207ENST00000450066 CHCHD1Q96BP2 118 aaKnown RBP10.41□□□□□ -0.74
USP39-207ENST00000450066 URB1-AS1Q96HZ7 61 aa10.41□□□□□ -0.74
USP39-207ENST00000450066 SMKR1H3BMG3 65 aa10.4□□□□□ -0.74
USP39-207ENST00000450066 LINC00614P0C842 121 aa10.4□□□□□ -0.74
USP39-207ENST00000450066 SMIM6P0DI80 62 aa10.4□□□□□ -0.74
USP39-207ENST00000450066 C14orf178Q8N769 122 aaPredicted RBP10.4□□□□□ -0.74
USP39-207ENST00000450066 SYT8Q8NBV8 401 aa10.4□□□□□ -0.74
USP39-207ENST00000450066 WIPF1O43516 503 aa10.4□□□□□ -0.75
USP39-207ENST00000450066 HSBP1O75506 76 aa10.4□□□□□ -0.75
USP39-207ENST00000450066 NCR2O95944 276 aa10.4□□□□□ -0.75
USP39-207ENST00000450066 MORN3Q6PF18 240 aaPredicted RBP10.4□□□□□ -0.75
USP39-207ENST00000450066 SHISA2Q6UWI4 295 aa10.4□□□□□ -0.75
USP39-207ENST00000450066 MRAP2Q96G30 205 aa10.4□□□□□ -0.75
USP39-207ENST00000450066 NPYP01303 97 aa10.39□□□□□ -0.75
USP39-207ENST00000450066 GIG44P09565 113 aaPredicted RBP10.39□□□□□ -0.75
USP39-207ENST00000450066 AMTP48728 403 aa10.39□□□□□ -0.75
USP39-207ENST00000450066 C1orf158Q8N1D5 194 aa10.39□□□□□ -0.75
USP39-207ENST00000450066 DEFB125Q8N687 156 aa10.39□□□□□ -0.75
USP39-207ENST00000450066 TMEM158Q8WZ71 300 aa10.39□□□□□ -0.75
USP39-207ENST00000450066 TMEM208Q9BTX3 173 aa10.39□□□□□ -0.75
USP39-207ENST00000450066 STAB1Q9NY15 2570 aa10.39□□□□□ -0.75
USP39-207ENST00000450066 RPL35AP18077 110 aaKnown RBP10.38□□□□□ -0.75
USP39-207ENST00000450066 PMCHP20382 165 aa10.38□□□□□ -0.75
USP39-207ENST00000450066 C1QTNF4Q9BXJ3 329 aa10.38□□□□□ -0.75
USP39-207ENST00000450066 KIF25-AS1Q9Y6Z4 181 aa10.38□□□□□ -0.75
USP39-207ENST00000450066 GAS8-AS1O95177 125 aa10.38□□□□□ -0.75
USP39-207ENST00000450066 TNFRSF6BO95407 300 aa10.38□□□□□ -0.75
USP39-207ENST00000450066 SMIM17P0DL12 118 aa10.38□□□□□ -0.75
USP39-207ENST00000450066 IGLL1P15814 213 aa10.38□□□□□ -0.75
USP39-207ENST00000450066 ZNF415Q09FC8 603 aa10.38□□□□□ -0.75
USP39-207ENST00000450066 ZNF876PQ49A33 203 aa10.38□□□□□ -0.75
USP39-207ENST00000450066 POM121L12Q8N7R1 296 aa10.38□□□□□ -0.75
USP39-207ENST00000450066 PRSS3P2Q8NHM4 247 aa10.38□□□□□ -0.75
USP39-207ENST00000450066 TRAV26-2A0A0B4J265 109 aa10.37□□□□□ -0.75
USP39-207ENST00000450066 PRM2P04554 102 aa10.37□□□□□ -0.75
USP39-207ENST00000450066 C12orf54Q6X4T0 127 aa10.37□□□□□ -0.75
USP39-207ENST00000450066 FAM19A2Q8N3H0 131 aa10.37□□□□□ -0.75
USP39-207ENST00000450066 C11orf72Q8NBR9 251 aa10.37□□□□□ -0.75
USP39-207ENST00000450066 C12orf57Q99622 126 aa10.37□□□□□ -0.75
USP39-207ENST00000450066 IFI27P40305 119 aaPredicted RBP10.37□□□□□ -0.75
USP39-207ENST00000450066 LINC00315P59091 139 aa10.37□□□□□ -0.75
USP39-207ENST00000450066 PYY3Q5JQD4 70 aa10.37□□□□□ -0.75
USP39-207ENST00000450066 NRACQ8N912 160 aa10.37□□□□□ -0.75
USP39-207ENST00000450066 PTH2Q96A98 100 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms