RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 NHLRC2Q8NBF2 726 aa14.01□□□□□ -0.17
SDC1-205ENST00000447124 PEX7O00628 323 aa14□□□□□ -0.17
SDC1-205ENST00000447124 CIDEAO60543 219 aa14□□□□□ -0.17
SDC1-205ENST00000447124 Q6ZSN1 163 aa14□□□□□ -0.17
SDC1-205ENST00000447124 PGPEP1Q9NXJ5 209 aa14□□□□□ -0.17
SDC1-205ENST00000447124 A0A087WTM6 91 aa13.99□□□□□ -0.17
SDC1-205ENST00000447124 TRBV6-4A0A1B0GX49 114 aa13.99□□□□□ -0.17
SDC1-205ENST00000447124 FABP5P3A8MUU1 101 aa13.99□□□□□ -0.17
SDC1-205ENST00000447124 K7EP13 123 aa13.99□□□□□ -0.17
SDC1-205ENST00000447124 CRYGDP07320 174 aa13.98□□□□□ -0.17
SDC1-205ENST00000447124 ERVFC1-1P60608 527 aa13.98□□□□□ -0.17
SDC1-205ENST00000447124 PRADC1Q9BSG0 188 aa13.98□□□□□ -0.17
SDC1-205ENST00000447124 MAP1LC3B2A6NCE7 125 aa13.97□□□□□ -0.17
SDC1-205ENST00000447124 FHITP49789 147 aa13.97□□□□□ -0.17
SDC1-205ENST00000447124 PPT1P50897 306 aa13.97□□□□□ -0.17
SDC1-205ENST00000447124 RHOHQ15669 191 aa13.97□□□□□ -0.17
SDC1-205ENST00000447124 Q86TA4 180 aa13.97□□□□□ -0.17
SDC1-205ENST00000447124 Q8N1X5 172 aa13.97□□□□□ -0.17
SDC1-205ENST00000447124 HIST1H2BAQ96A08 127 aa13.97□□□□□ -0.17
SDC1-205ENST00000447124 NKX6-2Q9C056 277 aaPredicted RBP13.97□□□□□ -0.17
SDC1-205ENST00000447124 MAP1LC3BQ9GZQ8 125 aa13.97□□□□□ -0.17
SDC1-205ENST00000447124 JPT2Q9H910 190 aa13.97□□□□□ -0.17
SDC1-205ENST00000447124 IGHV3-38A0A0C4DH36 116 aa13.96□□□□□ -0.17
SDC1-205ENST00000447124 COX8CQ7Z4L0 72 aa13.96□□□□□ -0.17
SDC1-205ENST00000447124 ZC2HC1AQ96GY0 325 aa13.96□□□□□ -0.17
SDC1-205ENST00000447124 PARLQ9H300 379 aa13.96□□□□□ -0.17
SDC1-205ENST00000447124 Q9UF83 564 aa13.96□□□□□ -0.17
SDC1-205ENST00000447124 FAT1Q14517 4588 aa13.95□□□□□ -0.18
SDC1-205ENST00000447124 EREGO14944 169 aa13.95□□□□□ -0.18
SDC1-205ENST00000447124 S100A4P26447 101 aaKnown RBP13.95□□□□□ -0.18
SDC1-205ENST00000447124 LINC01556Q5JQF7 62 aa13.95□□□□□ -0.18
SDC1-205ENST00000447124 SAMD10Q9BYL1 202 aa13.95□□□□□ -0.18
SDC1-205ENST00000447124 SCRT2Q9NQ03 307 aa13.95□□□□□ -0.18
SDC1-205ENST00000447124 KRBOX1C9JBD0 128 aa13.94□□□□□ -0.18
SDC1-205ENST00000447124 MGST1P10620 155 aaKnown RBP13.94□□□□□ -0.18
SDC1-205ENST00000447124 ASIPP42127 132 aa13.94□□□□□ -0.18
SDC1-205ENST00000447124 LGALSLQ3ZCW2 172 aaPredicted RBP13.94□□□□□ -0.18
SDC1-205ENST00000447124 DMRTA1Q5VZB9 504 aa13.94□□□□□ -0.18
SDC1-205ENST00000447124 UFSP1Q6NVU6 142 aa13.94□□□□□ -0.18
SDC1-205ENST00000447124 C10orf126Q8N4M7 172 aa13.94□□□□□ -0.18
SDC1-205ENST00000447124 OR11H4Q8NGC9 324 aa13.94□□□□□ -0.18
SDC1-205ENST00000447124 ATP6V0E2Q8NHE4 81 aa13.94□□□□□ -0.18
SDC1-205ENST00000447124 ZFP30Q9Y2G7 519 aa13.94□□□□□ -0.18
SDC1-205ENST00000447124 B4DEV8 164 aa13.93□□□□□ -0.18
SDC1-205ENST00000447124 PIK3CD-AS1Q5SR53 167 aa13.93□□□□□ -0.18
SDC1-205ENST00000447124 DNLZQ5SXM8 178 aa13.93□□□□□ -0.18
SDC1-205ENST00000447124 LELP1Q5T871 98 aa13.93□□□□□ -0.18
SDC1-205ENST00000447124 KCNRGQ8N5I3 272 aa13.93□□□□□ -0.18
SDC1-205ENST00000447124 GTSF1LQ9H1H1 148 aa13.93□□□□□ -0.18
SDC1-205ENST00000447124 IL36BQ9NZH7 164 aa13.93□□□□□ -0.18
SDC1-205ENST00000447124 TRAV8-6A0A0B4J262 113 aa13.92□□□□□ -0.18
SDC1-205ENST00000447124 GRIFINA4D1Z8 144 aa13.92□□□□□ -0.18
SDC1-205ENST00000447124 A8MWV9 139 aa13.92□□□□□ -0.18
SDC1-205ENST00000447124 IBA57-AS1B1ANH7 110 aa13.92□□□□□ -0.18
SDC1-205ENST00000447124 SH2D1AO60880 128 aa13.92□□□□□ -0.18
SDC1-205ENST00000447124 ARMS2P0C7Q2 107 aa13.92□□□□□ -0.18
SDC1-205ENST00000447124 KRTAP10-1P60331 282 aa13.92□□□□□ -0.18
SDC1-205ENST00000447124 OR10J3Q5JRS4 329 aa13.92□□□□□ -0.18
SDC1-205ENST00000447124 ZFP2Q6ZN57 461 aa13.92□□□□□ -0.18
SDC1-205ENST00000447124 DNAH8Q96JB1 4490 aa13.91□□□□□ -0.18
SDC1-205ENST00000447124 TRBV6-1A0A0K0K1D8 114 aa13.91□□□□□ -0.18
SDC1-205ENST00000447124 H3BVH4 76 aa13.91□□□□□ -0.18
SDC1-205ENST00000447124 M0R036 132 aa13.91□□□□□ -0.18
SDC1-205ENST00000447124 LINC00694P0DN24 101 aa13.91□□□□□ -0.18
SDC1-205ENST00000447124 XGP55808 180 aa13.91□□□□□ -0.18
SDC1-205ENST00000447124 CST9LP1Q5W188 147 aa13.91□□□□□ -0.18
SDC1-205ENST00000447124 CDPF1Q6NVV7 123 aa13.91□□□□□ -0.18
SDC1-205ENST00000447124 LRCOL1A6NCL2 159 aa13.9□□□□□ -0.18
SDC1-205ENST00000447124 GAGE12JA6NER3 117 aa13.9□□□□□ -0.18
SDC1-205ENST00000447124 IGHV3-30P01768 117 aa13.9□□□□□ -0.18
SDC1-205ENST00000447124 IGHV3-33P01772 117 aa13.9□□□□□ -0.18
SDC1-205ENST00000447124 IGHV3-30-3P0DP02 117 aa13.9□□□□□ -0.18
SDC1-205ENST00000447124 IGHV3-30-5P0DP03 117 aa13.9□□□□□ -0.18
SDC1-205ENST00000447124 GAGE1Q13065 139 aa13.9□□□□□ -0.18
SDC1-205ENST00000447124 GAGE4Q13068 117 aa13.9□□□□□ -0.18
SDC1-205ENST00000447124 GAGE5Q13069 117 aa13.9□□□□□ -0.18
SDC1-205ENST00000447124 ZNF674Q2M3X9 581 aa13.9□□□□□ -0.18
SDC1-205ENST00000447124 GAGE13Q4V321 117 aa13.9□□□□□ -0.18
SDC1-205ENST00000447124 C14orf178Q8N769 122 aaPredicted RBP13.9□□□□□ -0.18
SDC1-205ENST00000447124 MBD3L1Q8WWY6 194 aa13.9□□□□□ -0.18
SDC1-205ENST00000447124 FMC1Q96HJ9 113 aa13.9□□□□□ -0.18
SDC1-205ENST00000447124 PAGE4O60829 102 aa13.89□□□□□ -0.19
SDC1-205ENST00000447124 LTAP01374 205 aa13.89□□□□□ -0.19
SDC1-205ENST00000447124 ZNF345Q14585 488 aa13.89□□□□□ -0.19
SDC1-205ENST00000447124 Q8N3U1 123 aa13.89□□□□□ -0.19
SDC1-205ENST00000447124 STOML3Q8TAV4 291 aa13.89□□□□□ -0.19
SDC1-205ENST00000447124 SEC11BP0C7V7 166 aa13.88□□□□□ -0.19
SDC1-205ENST00000447124 UBE2G1P62253 170 aa13.88□□□□□ -0.19
SDC1-205ENST00000447124 FAM162BQ5T6X4 162 aa13.88□□□□□ -0.19
SDC1-205ENST00000447124 SFT2D1Q8WV19 159 aa13.88□□□□□ -0.19
SDC1-205ENST00000447124 TMSB15BA0A087X1C1 80 aa13.87□□□□□ -0.19
SDC1-205ENST00000447124 HMSDA8MTL9 139 aa13.87□□□□□ -0.19
SDC1-205ENST00000447124 LINC01559Q495D7 138 aa13.87□□□□□ -0.19
SDC1-205ENST00000447124 A0A1B0GV50 99 aa13.86□□□□□ -0.19
SDC1-205ENST00000447124 AKR1C3P42330 323 aa13.86□□□□□ -0.19
SDC1-205ENST00000447124 FAM213BQ8TBF2 198 aa13.86□□□□□ -0.19
SDC1-205ENST00000447124 TCEAL7Q9BRU2 100 aa13.86□□□□□ -0.19
SDC1-205ENST00000447124 Q9HAA7 133 aa13.86□□□□□ -0.19
SDC1-205ENST00000447124 SFRP2Q96HF1 295 aa13.85□□□□□ -0.19
SDC1-205ENST00000447124 BOLA1Q9Y3E2 137 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms