RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 RPL36A-HNRNPH2H7BZ11 118 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 RPL7L1Q6DKI1 246 aaKnown RBP1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 KRTAP5-11Q6L8G4 156 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 DYNAPQ8N1N2 210 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 MUCL1Q96DR8 90 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 IER3IP1Q9Y5U9 82 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 S4R3C0 116 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 SCN8AQ9UQD0 1980 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 ARFGEF2Q9Y6D5 1785 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 ATAD5Q96QE3 1844 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 ICE1Q9Y2F5 2266 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 C4BP0C0L5 1744 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 IGHV3-64A0A075B6Q5 118 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 A6NIN4 97 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 C16orf90A8MZG2 172 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 GEMIN2O14893 280 aaKnown RBP1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 CD3DP04234 171 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 IL5P05113 134 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 KRTAP25-1Q3LHN0 102 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 LYPD6Q86Y78 171 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 LTN1O94822 1766 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 BTAF1O14981 1849 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 SIPA1L1O43166 1804 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 PIPP12273 146 aaPredicted RBP1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 COL8A2P25067 703 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 FOXF1Q12946 379 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 PATE2Q6UY27 113 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 Q6ZQT0 140 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 OR8B3Q8NGG8 313 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 HYLS1Q96M11 299 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 SLC50A1Q9BRV3 221 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 FAIMQ9NVQ4 179 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 NDUFB11Q9NX14 153 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 RPL26L1Q9UNX3 145 aaKnown RBP1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 CHCHD2Q9Y6H1 151 aaPredicted RBP1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 COL5A2P05997 1499 aaPredicted RBP1.47□□□□□ -2.17
CCDC88A-208ENST00000444458 IGF2RP11717 2491 aa1.47□□□□□ -2.17
CCDC88A-208ENST00000444458 CSPG4Q6UVK1 2322 aa1.47□□□□□ -2.17
CCDC88A-208ENST00000444458 IGKV1D-42A0A075B6H8 117 aa1.47□□□□□ -2.17
CCDC88A-208ENST00000444458 J3QLW9 94 aa1.47□□□□□ -2.17
CCDC88A-208ENST00000444458 NNATQ16517 81 aa1.47□□□□□ -2.17
CCDC88A-208ENST00000444458 OR2T2Q6IF00 324 aa1.47□□□□□ -2.17
CCDC88A-208ENST00000444458 C3orf56Q8N813 242 aa1.47□□□□□ -2.17
CCDC88A-208ENST00000444458 NABP2Q9BQ15 211 aa1.47□□□□□ -2.17
CCDC88A-208ENST00000444458 AGPAT4-IT1Q9H0P7 198 aa1.47□□□□□ -2.17
CCDC88A-208ENST00000444458 FAM215AQ9Y5M1 114 aa1.47□□□□□ -2.17
CCDC88A-208ENST00000444458 CITO14578 2027 aa1.47□□□□□ -2.17
CCDC88A-208ENST00000444458 FLNCQ14315 2725 aa1.47□□□□□ -2.17
CCDC88A-208ENST00000444458 CASP8AP2Q9UKL3 1982 aa1.47□□□□□ -2.17
CCDC88A-208ENST00000444458 IGKV2D-24A0A075B6R9 120 aa1.47□□□□□ -2.17
CCDC88A-208ENST00000444458 A0A1W2PRS3 328 aa1.47□□□□□ -2.17
CCDC88A-208ENST00000444458 MCRIP1C9JLW8 97 aa1.47□□□□□ -2.17
CCDC88A-208ENST00000444458 ASAH2BP0C7U1 165 aa1.47□□□□□ -2.17
CCDC88A-208ENST00000444458 ZNF14P17017 642 aaPredicted RBP1.47□□□□□ -2.17
CCDC88A-208ENST00000444458 UBA52P62987 128 aaKnown RBP1.47□□□□□ -2.17
CCDC88A-208ENST00000444458 BTG2P78543 158 aa1.47□□□□□ -2.17
CCDC88A-208ENST00000444458 MIC13Q5XKP0 118 aa1.47□□□□□ -2.17
CCDC88A-208ENST00000444458 CASC2Q6XLA1 102 aa1.47□□□□□ -2.17
CCDC88A-208ENST00000444458 ZNF431Q8TF32 576 aaPredicted RBP1.47□□□□□ -2.17
CCDC88A-208ENST00000444458 TMEM242Q9NWH2 141 aa1.47□□□□□ -2.17
CCDC88A-208ENST00000444458 SERP1Q9Y6X1 66 aa1.47□□□□□ -2.17
CCDC88A-208ENST00000444458 MYH7P12883 1935 aa1.47□□□□□ -2.17
CCDC88A-208ENST00000444458 THADAQ6YHU6 1953 aa1.47□□□□□ -2.17
CCDC88A-208ENST00000444458 IGHV3OR16-8A0A075B7F1 116 aa1.47□□□□□ -2.17
CCDC88A-208ENST00000444458 TNFP01375 233 aa1.47□□□□□ -2.17
CCDC88A-208ENST00000444458 BAALC-AS2P0C853 105 aa1.47□□□□□ -2.17
CCDC88A-208ENST00000444458 MDKP21741 143 aaPredicted RBP1.47□□□□□ -2.17
CCDC88A-208ENST00000444458 Q6P435 159 aa1.47□□□□□ -2.17
CCDC88A-208ENST00000444458 CXCL16Q9H2A7 254 aa1.47□□□□□ -2.17
CCDC88A-208ENST00000444458 IGLV4-60A0A075B6I1 120 aa1.46□□□□□ -2.18
CCDC88A-208ENST00000444458 UBL3O95164 117 aa1.46□□□□□ -2.18
CCDC88A-208ENST00000444458 CPSF4O95639 269 aaKnown RBP1.46□□□□□ -2.18
CCDC88A-208ENST00000444458 NPC2P61916 151 aa1.46□□□□□ -2.18
CCDC88A-208ENST00000444458 C2orf82Q6UX34 121 aa1.46□□□□□ -2.18
CCDC88A-208ENST00000444458 C4orf33Q8N1A6 199 aa1.46□□□□□ -2.18
CCDC88A-208ENST00000444458 Q8NAQ8 132 aa1.46□□□□□ -2.18
CCDC88A-208ENST00000444458 C5orf17Q8NAS9 161 aa1.46□□□□□ -2.18
CCDC88A-208ENST00000444458 FAM208AQ9UK61 1670 aaKnown RBP1.46□□□□□ -2.18
CCDC88A-208ENST00000444458 CCDC88AQ3V6T2 1871 aa1.46□□□□□ -2.18
CCDC88A-208ENST00000444458 EML6Q6ZMW3 1958 aa1.46□□□□□ -2.18
CCDC88A-208ENST00000444458 TCF20Q9UGU0 1960 aaKnown RBP1.46□□□□□ -2.18
CCDC88A-208ENST00000444458 FANCMQ8IYD8 2048 aa1.46□□□□□ -2.18
CCDC88A-208ENST00000444458 OBSL1O75147 1896 aa1.46□□□□□ -2.18
CCDC88A-208ENST00000444458 FER1L6Q2WGJ9 1857 aa1.46□□□□□ -2.18
CCDC88A-208ENST00000444458 MAST2Q6P0Q8 1798 aa1.46□□□□□ -2.18
CCDC88A-208ENST00000444458 COL4A4P53420 1690 aaPredicted RBP1.46□□□□□ -2.18
CCDC88A-208ENST00000444458 DUOX1Q9NRD9 1551 aa1.46□□□□□ -2.18
CCDC88A-208ENST00000444458 LINC00032P0C843 101 aa1.46□□□□□ -2.18
CCDC88A-208ENST00000444458 DSCR10P59022 87 aa1.46□□□□□ -2.18
CCDC88A-208ENST00000444458 TMEM136Q6ZRR5 245 aa1.46□□□□□ -2.18
CCDC88A-208ENST00000444458 CLECL1Q8IZS7 167 aa1.46□□□□□ -2.18
CCDC88A-208ENST00000444458 RPRMQ9NS64 109 aa1.46□□□□□ -2.18
CCDC88A-208ENST00000444458 KLK12Q9UKR0 248 aa1.46□□□□□ -2.18
CCDC88A-208ENST00000444458 KIF25-AS1Q9Y6Z4 181 aa1.46□□□□□ -2.18
CCDC88A-208ENST00000444458 A0A1B0GU33 70 aa1.46□□□□□ -2.18
CCDC88A-208ENST00000444458 PANO1I0J062 215 aa1.46□□□□□ -2.18
CCDC88A-208ENST00000444458 ZNF737O75373 536 aa1.46□□□□□ -2.18
CCDC88A-208ENST00000444458 RPL26P61254 145 aaKnown RBP1.46□□□□□ -2.18
CCDC88A-208ENST00000444458 KPRPQ5T749 579 aaPredicted RBP1.46□□□□□ -2.18
CCDC88A-208ENST00000444458 ATP6V0E2Q8NHE4 81 aa1.46□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms