RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 PGPEP1Q9NXJ5 209 aa6.59□□□□□ -1.35
HPS4-206ENST00000439453 H7C2G1 150 aa6.58□□□□□ -1.36
HPS4-206ENST00000439453 IGHG4P01861 327 aa6.58□□□□□ -1.36
HPS4-206ENST00000439453 KLK15Q9H2R5 256 aa6.58□□□□□ -1.36
HPS4-206ENST00000439453 KAAG1Q9UBP8 84 aa6.58□□□□□ -1.36
HPS4-206ENST00000439453 OR11H12B2RN74 326 aa6.58□□□□□ -1.36
HPS4-206ENST00000439453 MT-ATP8P03928 68 aa6.58□□□□□ -1.36
HPS4-206ENST00000439453 EFNA4P52798 201 aa6.58□□□□□ -1.36
HPS4-206ENST00000439453 MFAP4P55083 255 aa6.58□□□□□ -1.36
HPS4-206ENST00000439453 OR11H1Q8NG94 326 aa6.58□□□□□ -1.36
HPS4-206ENST00000439453 OR11H2Q8NH07 326 aa6.58□□□□□ -1.36
HPS4-206ENST00000439453 DLX4Q92988 240 aaPredicted RBP6.58□□□□□ -1.36
HPS4-206ENST00000439453 F8P00451 2351 aa6.58□□□□□ -1.36
HPS4-206ENST00000439453 ACANP16112 2415 aa6.58□□□□□ -1.36
HPS4-206ENST00000439453 TRGV3P03979 118 aa6.58□□□□□ -1.36
HPS4-206ENST00000439453 COX7A1P24310 79 aa6.58□□□□□ -1.36
HPS4-206ENST00000439453 ATP5J2P56134 94 aa6.58□□□□□ -1.36
HPS4-206ENST00000439453 HES1Q14469 280 aa6.58□□□□□ -1.36
HPS4-206ENST00000439453 NFE4Q86UQ8 179 aa6.58□□□□□ -1.36
HPS4-206ENST00000439453 TEX29Q8N6K0 151 aa6.58□□□□□ -1.36
HPS4-206ENST00000439453 NRACQ8N912 160 aa6.58□□□□□ -1.36
HPS4-206ENST00000439453 Q96MF0 132 aa6.58□□□□□ -1.36
HPS4-206ENST00000439453 RNF5Q99942 180 aa6.58□□□□□ -1.36
HPS4-206ENST00000439453 IGHV4-30-2A0A087WSY4 118 aa6.57□□□□□ -1.36
HPS4-206ENST00000439453 H7C1H1 209 aa6.57□□□□□ -1.36
HPS4-206ENST00000439453 ERCC8Q13216 396 aa6.57□□□□□ -1.36
HPS4-206ENST00000439453 SMAD5-AS1Q9Y6J3 95 aa6.57□□□□□ -1.36
HPS4-206ENST00000439453 NSD1Q96L73 2696 aaPredicted RBP6.57□□□□□ -1.36
HPS4-206ENST00000439453 F8VRH5 84 aa6.57□□□□□ -1.36
HPS4-206ENST00000439453 FHL3Q13643 280 aa6.57□□□□□ -1.36
HPS4-206ENST00000439453 TEP1Q99973 2627 aaKnown RBP6.57□□□□□ -1.36
HPS4-206ENST00000439453 TRAV12-1A0A0B4J245 112 aa6.57□□□□□ -1.36
HPS4-206ENST00000439453 TRAV26-2A0A0B4J265 109 aa6.57□□□□□ -1.36
HPS4-206ENST00000439453 SNCGO76070 127 aa6.57□□□□□ -1.36
HPS4-206ENST00000439453 LGALS1P09382 135 aaKnown RBP6.57□□□□□ -1.36
HPS4-206ENST00000439453 Q6ZUT4 128 aa6.57□□□□□ -1.36
HPS4-206ENST00000439453 DYNAPQ8N1N2 210 aa6.57□□□□□ -1.36
HPS4-206ENST00000439453 C10orf105Q8TEF2 133 aa6.57□□□□□ -1.36
HPS4-206ENST00000439453 GLMPQ8WWB7 406 aa6.57□□□□□ -1.36
HPS4-206ENST00000439453 CFHR4Q92496 578 aa6.57□□□□□ -1.36
HPS4-206ENST00000439453 MXRA5Q9NR99 2828 aa6.57□□□□□ -1.36
HPS4-206ENST00000439453 XGP55808 180 aa6.57□□□□□ -1.36
HPS4-206ENST00000439453 F8W735 103 aaPredicted RBP6.56□□□□□ -1.36
HPS4-206ENST00000439453 LYNX1G3V0Z9 82 aa6.56□□□□□ -1.36
HPS4-206ENST00000439453 LYNX1P0DP58 116 aa6.56□□□□□ -1.36
HPS4-206ENST00000439453 S100A4P26447 101 aaKnown RBP6.56□□□□□ -1.36
HPS4-206ENST00000439453 FANCD2OSQ96PS1 177 aa6.56□□□□□ -1.36
HPS4-206ENST00000439453 IGKV3D-20A0A0C4DH25 116 aa6.56□□□□□ -1.36
HPS4-206ENST00000439453 LINC01549A6NIU2 74 aa6.56□□□□□ -1.36
HPS4-206ENST00000439453 TMEM78Q5T7P6 136 aa6.56□□□□□ -1.36
HPS4-206ENST00000439453 IL17RELQ6ZVW7 336 aa6.56□□□□□ -1.36
HPS4-206ENST00000439453 SMR3AQ99954 134 aa6.56□□□□□ -1.36
HPS4-206ENST00000439453 IGLV11-55A0A075B6I3 123 aa6.56□□□□□ -1.36
HPS4-206ENST00000439453 PRAC2D3DTV9 90 aa6.56□□□□□ -1.36
HPS4-206ENST00000439453 TIMM23O14925 209 aa6.56□□□□□ -1.36
HPS4-206ENST00000439453 IGHV3-23P01764 117 aa6.56□□□□□ -1.36
HPS4-206ENST00000439453 DYNLRB1Q9NP97 96 aa6.56□□□□□ -1.36
HPS4-206ENST00000439453 TSPAN13O95857 204 aa6.55□□□□□ -1.36
HPS4-206ENST00000439453 RPL13AP40429 203 aaKnown RBP6.55□□□□□ -1.36
HPS4-206ENST00000439453 PPDPFLQ8WWR9 84 aa6.55□□□□□ -1.36
HPS4-206ENST00000439453 PTH2Q96A98 100 aa6.55□□□□□ -1.36
HPS4-206ENST00000439453 CARD19Q96LW7 228 aa6.55□□□□□ -1.36
HPS4-206ENST00000439453 C21orf62Q9NYP8 219 aa6.55□□□□□ -1.36
HPS4-206ENST00000439453 C11orf21Q9P2W6 132 aa6.55□□□□□ -1.36
HPS4-206ENST00000439453 LY6LH3BQJ8 138 aa6.55□□□□□ -1.36
HPS4-206ENST00000439453 NBR2O15453 112 aa6.55□□□□□ -1.36
HPS4-206ENST00000439453 ZFP2Q6ZN57 461 aa6.55□□□□□ -1.36
HPS4-206ENST00000439453 RNF183Q96D59 192 aa6.55□□□□□ -1.36
HPS4-206ENST00000439453 ERG28Q9UKR5 140 aa6.55□□□□□ -1.36
HPS4-206ENST00000439453 NIPBLQ6KC79 2804 aaeCLIP6.55□□□□□ -1.36
HPS4-206ENST00000439453 TRAV8-2A0A0B4J237 113 aa6.55□□□□□ -1.36
HPS4-206ENST00000439453 UBE2D1P51668 147 aa6.54□□□□□ -1.36
HPS4-206ENST00000439453 MAPK1IP1LQ8NDC0 245 aa6.54□□□□□ -1.36
HPS4-206ENST00000439453 SCGB3A1Q96QR1 104 aa6.54□□□□□ -1.36
HPS4-206ENST00000439453 GATA3P23771 443 aa6.54□□□□□ -1.36
HPS4-206ENST00000439453 ZFAND6Q6FIF0 208 aa6.54□□□□□ -1.36
HPS4-206ENST00000439453 PRADC1Q9BSG0 188 aa6.54□□□□□ -1.36
HPS4-206ENST00000439453 IGHV3OR16-8A0A075B7F1 116 aa6.54□□□□□ -1.36
HPS4-206ENST00000439453 ZNF815PA8K554 130 aa6.54□□□□□ -1.36
HPS4-206ENST00000439453 UBE2D3P61077 147 aa6.54□□□□□ -1.36
HPS4-206ENST00000439453 UBE2D2P62837 147 aa6.54□□□□□ -1.36
HPS4-206ENST00000439453 TEN1Q86WV5 123 aa6.54□□□□□ -1.36
HPS4-206ENST00000439453 NEXN-AS1Q8NBZ9 246 aa6.54□□□□□ -1.36
HPS4-206ENST00000439453 SMIM2Q9BVW6 85 aa6.54□□□□□ -1.36
HPS4-206ENST00000439453 IGHV4-61A0A0C4DH41 118 aa6.53□□□□□ -1.36
HPS4-206ENST00000439453 IGHV7-4-1A0A0J9YVY3 117 aa6.53□□□□□ -1.36
HPS4-206ENST00000439453 RNF223E7ERA6 249 aa6.53□□□□□ -1.36
HPS4-206ENST00000439453 SPANXN1Q5VSR9 72 aa6.53□□□□□ -1.36
HPS4-206ENST00000439453 RNF182Q8N6D2 247 aa6.53□□□□□ -1.36
HPS4-206ENST00000439453 OR11H6Q8NGC7 330 aa6.53□□□□□ -1.36
HPS4-206ENST00000439453 BPESC1Q9GZL8 116 aa6.53□□□□□ -1.36
HPS4-206ENST00000439453 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.53□□□□□ -1.363e-7■■■■□ 19.5
HPS4-206ENST00000439453 CSPG4Q6UVK1 2322 aa6.53□□□□□ -1.36
HPS4-206ENST00000439453 LINC01548A6NM66 108 aa6.53□□□□□ -1.36
HPS4-206ENST00000439453 J3KRW8 73 aa6.53□□□□□ -1.36
HPS4-206ENST00000439453 HERVK_113P61574 105 aa6.53□□□□□ -1.36
HPS4-206ENST00000439453 GAGE2BQ13066 116 aa6.53□□□□□ -1.36
HPS4-206ENST00000439453 C5orf64Q2M2E5 130 aa6.53□□□□□ -1.36
HPS4-206ENST00000439453 GAGE2EQ4V326 116 aa6.53□□□□□ -1.36
HPS4-206ENST00000439453 TOMM6Q96B49 74 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms