RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 APOMO95445 188 aa8.34□□□□□ -1.07
LIMS1-207ENST00000422797 ID1P41134 155 aa8.34□□□□□ -1.07
LIMS1-207ENST00000422797 SRSF9Q13242 221 aaKnown RBP eCLIP8.34□□□□□ -1.07
LIMS1-207ENST00000422797 ANXA2RQ3ZCQ2 193 aa8.34□□□□□ -1.07
LIMS1-207ENST00000422797 ETDBQ3ZM63 59 aa8.34□□□□□ -1.07
LIMS1-207ENST00000422797 MORN3Q6PF18 240 aaPredicted RBP8.34□□□□□ -1.07
LIMS1-207ENST00000422797 C14orf178Q8N769 122 aaPredicted RBP8.34□□□□□ -1.07
LIMS1-207ENST00000422797 C20orf173Q96LM9 149 aa8.34□□□□□ -1.07
LIMS1-207ENST00000422797 KIR2DL4Q99706 377 aa8.34□□□□□ -1.07
LIMS1-207ENST00000422797 SPAG8Q99932 426 aaPredicted RBP8.34□□□□□ -1.07
LIMS1-207ENST00000422797 ZFYVE26Q68DK2 2539 aa8.34□□□□□ -1.07
LIMS1-207ENST00000422797 TRBV6-5A0A0K0K1A5 114 aa8.34□□□□□ -1.08
LIMS1-207ENST00000422797 RNF223E7ERA6 249 aa8.34□□□□□ -1.08
LIMS1-207ENST00000422797 M0QXV9 152 aa8.34□□□□□ -1.08
LIMS1-207ENST00000422797 UBE2D3P61077 147 aa8.34□□□□□ -1.08
LIMS1-207ENST00000422797 UBE2D2P62837 147 aa8.34□□□□□ -1.08
LIMS1-207ENST00000422797 CFAP126Q5VTH2 177 aa8.34□□□□□ -1.08
LIMS1-207ENST00000422797 ODF3Q96PU9 254 aa8.34□□□□□ -1.08
LIMS1-207ENST00000422797 GTSF1LQ9H1H1 148 aa8.34□□□□□ -1.08
LIMS1-207ENST00000422797 IGHV3OR16-13A0A075B7E8 117 aa8.33□□□□□ -1.08
LIMS1-207ENST00000422797 IGHV3-49A0A0A0MS15 119 aa8.33□□□□□ -1.08
LIMS1-207ENST00000422797 IGHV3-74A0A0B4J1X5 117 aa8.33□□□□□ -1.08
LIMS1-207ENST00000422797 LMO4P61968 165 aa8.33□□□□□ -1.08
LIMS1-207ENST00000422797 RHOHQ15669 191 aa8.33□□□□□ -1.08
LIMS1-207ENST00000422797 GPHB5Q86YW7 130 aa8.33□□□□□ -1.08
LIMS1-207ENST00000422797 RPL39LQ96EH5 51 aaKnown RBP8.33□□□□□ -1.08
LIMS1-207ENST00000422797 KLK15Q9H2R5 256 aa8.33□□□□□ -1.08
LIMS1-207ENST00000422797 ZNF580Q9UK33 172 aa8.33□□□□□ -1.08
LIMS1-207ENST00000422797 CEP295Q9C0D2 2601 aa8.32□□□□□ -1.08
LIMS1-207ENST00000422797 KLLNB2CW77 178 aa8.32□□□□□ -1.08
LIMS1-207ENST00000422797 K7EMT4 169 aa8.32□□□□□ -1.08
LIMS1-207ENST00000422797 CD7P09564 240 aa8.32□□□□□ -1.08
LIMS1-207ENST00000422797 RNASE3P12724 160 aaKnown RBP8.32□□□□□ -1.08
LIMS1-207ENST00000422797 RNASE4P34096 147 aaKnown RBP8.32□□□□□ -1.08
LIMS1-207ENST00000422797 POLR2KP53803 58 aaKnown RBP8.32□□□□□ -1.08
LIMS1-207ENST00000422797 SMAGPQ0VAQ4 97 aa8.32□□□□□ -1.08
LIMS1-207ENST00000422797 FOXI1Q12951 378 aa8.32□□□□□ -1.08
LIMS1-207ENST00000422797 PPDPFLQ8WWR9 84 aa8.32□□□□□ -1.08
LIMS1-207ENST00000422797 CNOT1A5YKK6 2376 aaKnown RBP8.32□□□□□ -1.08
LIMS1-207ENST00000422797 IGIPA6NJ69 53 aa8.31□□□□□ -1.08
LIMS1-207ENST00000422797 TSPAN13O95857 204 aa8.31□□□□□ -1.08
LIMS1-207ENST00000422797 IGHV1-69P01742 117 aa8.31□□□□□ -1.08
LIMS1-207ENST00000422797 FAM159AQ6UWV7 190 aa8.31□□□□□ -1.08
LIMS1-207ENST00000422797 ZFP2Q6ZN57 461 aa8.31□□□□□ -1.08
LIMS1-207ENST00000422797 SYT8Q8NBV8 401 aa8.31□□□□□ -1.08
LIMS1-207ENST00000422797 TP53TG1Q9Y2A0 90 aa8.31□□□□□ -1.08
LIMS1-207ENST00000422797 SELENOKQ9Y6D0 94 aa8.31□□□□□ -1.08
LIMS1-207ENST00000422797 KIF25-AS1Q9Y6Z4 181 aa8.31□□□□□ -1.08
LIMS1-207ENST00000422797 CELSR3Q9NYQ7 3312 aa8.31□□□□□ -1.08
LIMS1-207ENST00000422797 ANKHD1Q8IWZ3 2542 aaKnown RBP8.3□□□□□ -1.08
LIMS1-207ENST00000422797 IGLV4-69A0A075B6H9 119 aa8.3□□□□□ -1.08
LIMS1-207ENST00000422797 A0A0J9YY99 117 aa8.3□□□□□ -1.08
LIMS1-207ENST00000422797 TRBV27A0A0K0K1C4 114 aa8.3□□□□□ -1.08
LIMS1-207ENST00000422797 LGALS9O00182 355 aa8.3□□□□□ -1.08
LIMS1-207ENST00000422797 FOXC1Q12948 553 aa8.3□□□□□ -1.08
LIMS1-207ENST00000422797 LCE2AQ5TA79 106 aaPredicted RBP8.3□□□□□ -1.08
LIMS1-207ENST00000422797 AMTNQ6UX39 209 aa8.3□□□□□ -1.08
LIMS1-207ENST00000422797 SH2D6Q7Z4S9 175 aa8.3□□□□□ -1.08
LIMS1-207ENST00000422797 NFE4Q86UQ8 179 aa8.3□□□□□ -1.08
LIMS1-207ENST00000422797 SBSPONQ8IVN8 264 aa8.3□□□□□ -1.08
LIMS1-207ENST00000422797 SLC25A29Q8N8R3 303 aa8.3□□□□□ -1.08
LIMS1-207ENST00000422797 DAZ1Q9NQZ3 744 aaKnown RBP8.3□□□□□ -1.08
LIMS1-207ENST00000422797 SETXQ7Z333 2677 aaKnown RBP8.3□□□□□ -1.08
LIMS1-207ENST00000422797 LINC01548A6NM66 108 aa8.29□□□□□ -1.08
LIMS1-207ENST00000422797 TMEM262E9PQX1 116 aa8.29□□□□□ -1.08
LIMS1-207ENST00000422797 IGHG2P01859 326 aa8.29□□□□□ -1.08
LIMS1-207ENST00000422797 LINC00315P59091 139 aa8.29□□□□□ -1.08
LIMS1-207ENST00000422797 NSUN5P1Q3KNT7 163 aa8.29□□□□□ -1.08
LIMS1-207ENST00000422797 ZNF876PQ49A33 203 aa8.29□□□□□ -1.08
LIMS1-207ENST00000422797 TEN1Q86WV5 123 aa8.29□□□□□ -1.08
LIMS1-207ENST00000422797 NDUFA11Q86Y39 141 aa8.29□□□□□ -1.08
LIMS1-207ENST00000422797 LOC107984156A0A0G2JMH3 177 aa8.29□□□□□ -1.08
LIMS1-207ENST00000422797 A8MWV9 139 aa8.29□□□□□ -1.08
LIMS1-207ENST00000422797 DUSP14O95147 198 aaKnown RBP8.29□□□□□ -1.08
LIMS1-207ENST00000422797 CRYGDP07320 174 aa8.29□□□□□ -1.08
LIMS1-207ENST00000422797 LGALS3P17931 250 aaKnown RBP8.29□□□□□ -1.08
LIMS1-207ENST00000422797 SUMO4Q6EEV6 95 aa8.29□□□□□ -1.08
LIMS1-207ENST00000422797 ARL17AQ8IVW1 177 aa8.29□□□□□ -1.08
LIMS1-207ENST00000422797 C10orf126Q8N4M7 172 aa8.29□□□□□ -1.08
LIMS1-207ENST00000422797 ZZEF1O43149 2961 aa8.28□□□□□ -1.08
LIMS1-207ENST00000422797 APC2O95996 2303 aa8.28□□□□□ -1.08
LIMS1-207ENST00000422797 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.28□□□□□ -1.08
LIMS1-207ENST00000422797 A0A0J9YX75 114 aa8.28□□□□□ -1.08
LIMS1-207ENST00000422797 LEPROTO15243 131 aa8.28□□□□□ -1.08
LIMS1-207ENST00000422797 IGHV3-30P01768 117 aa8.28□□□□□ -1.08
LIMS1-207ENST00000422797 IGHV3-30-5P0DP03 117 aa8.28□□□□□ -1.08
LIMS1-207ENST00000422797 PSMB2P49721 201 aa8.28□□□□□ -1.08
LIMS1-207ENST00000422797 UNQ9165/PRO28630Q6UXU0 137 aa8.28□□□□□ -1.08
LIMS1-207ENST00000422797 Q6ZQT7 251 aa8.28□□□□□ -1.08
LIMS1-207ENST00000422797 TRPT1Q86TN4 253 aaKnown RBP8.28□□□□□ -1.08
LIMS1-207ENST00000422797 PLEKHB2Q96CS7 222 aa8.28□□□□□ -1.08
LIMS1-207ENST00000422797 RHPN1-AS1Q9BWJ2 59 aa8.28□□□□□ -1.08
LIMS1-207ENST00000422797 BPESC1Q9GZL8 116 aa8.28□□□□□ -1.08
LIMS1-207ENST00000422797 UBTD1Q9HAC8 227 aa8.28□□□□□ -1.08
LIMS1-207ENST00000422797 PRO1854Q9UHT4 67 aa8.28□□□□□ -1.08
LIMS1-207ENST00000422797 POLEQ07864 2286 aa8.27□□□□□ -1.08
LIMS1-207ENST00000422797 A0A0B4J2C4 111 aa8.27□□□□□ -1.09
LIMS1-207ENST00000422797 J3KRW8 73 aa8.27□□□□□ -1.09
LIMS1-207ENST00000422797 J3QQQ9 107 aa8.27□□□□□ -1.09
LIMS1-207ENST00000422797 GNRH2O43555 120 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms