RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 ZC2HC1AQ96GY0 325 aa10.64□□□□□ -0.71
CCDC88A-204ENST00000413716 PRR25Q96S07 402 aa10.64□□□□□ -0.71
CCDC88A-204ENST00000413716 KLF2Q9Y5W3 355 aaPredicted RBP10.64□□□□□ -0.71
CCDC88A-204ENST00000413716 CRYGSP22914 178 aa10.64□□□□□ -0.71
CCDC88A-204ENST00000413716 CD177Q8N6Q3 437 aa10.64□□□□□ -0.71
CCDC88A-204ENST00000413716 C11orf52Q96A22 123 aa10.64□□□□□ -0.71
CCDC88A-204ENST00000413716 SPRR3Q9UBC9 169 aa10.64□□□□□ -0.71
CCDC88A-204ENST00000413716 TRBV6-6A0A0A6YYG2 114 aa10.64□□□□□ -0.71
CCDC88A-204ENST00000413716 C20orf173Q96LM9 149 aa10.64□□□□□ -0.71
CCDC88A-204ENST00000413716 NDUFV3P56181 108 aaKnown RBP10.64□□□□□ -0.71
CCDC88A-204ENST00000413716 TEX36Q5VZQ5 186 aa10.64□□□□□ -0.71
CCDC88A-204ENST00000413716 IGKV1-16P04430 117 aa10.63□□□□□ -0.71
CCDC88A-204ENST00000413716 GFI1Q99684 422 aa10.63□□□□□ -0.71
CCDC88A-204ENST00000413716 NDUFA4O00483 81 aa10.63□□□□□ -0.71
CCDC88A-204ENST00000413716 FOXI1Q12951 378 aa10.63□□□□□ -0.71
CCDC88A-204ENST00000413716 RNF152Q8N8N0 203 aa10.63□□□□□ -0.71
CCDC88A-204ENST00000413716 UQCRQO14949 82 aa10.63□□□□□ -0.71
CCDC88A-204ENST00000413716 C10orf105Q8TEF2 133 aa10.63□□□□□ -0.71
CCDC88A-204ENST00000413716 SERP1Q9Y6X1 66 aa10.63□□□□□ -0.71
CCDC88A-204ENST00000413716 C5orf63A6NC05 138 aa10.62□□□□□ -0.71
CCDC88A-204ENST00000413716 ZNF883P0CG24 379 aa10.62□□□□□ -0.71
CCDC88A-204ENST00000413716 FAM110DQ8TAY7 271 aaPredicted RBP10.62□□□□□ -0.71
CCDC88A-204ENST00000413716 G3V4G9 280 aa10.62□□□□□ -0.71
CCDC88A-204ENST00000413716 NCR3O14931 201 aa10.62□□□□□ -0.71
CCDC88A-204ENST00000413716 DIRC1Q969H9 104 aa10.62□□□□□ -0.71
CCDC88A-204ENST00000413716 J3QRE1 110 aa10.62□□□□□ -0.71
CCDC88A-204ENST00000413716 NDUFC1O43677 76 aa10.62□□□□□ -0.71
CCDC88A-204ENST00000413716 IGLC1P0CG04 106 aa10.62□□□□□ -0.71
CCDC88A-204ENST00000413716 GAFA1Q96PS6 74 aa10.62□□□□□ -0.71
CCDC88A-204ENST00000413716 WI2-2373I1.2A0A1W2PRP0 233 aa10.62□□□□□ -0.71
CCDC88A-204ENST00000413716 WIPF3A6NGB9 483 aa10.62□□□□□ -0.71
CCDC88A-204ENST00000413716 ATP6V0E1O15342 81 aa10.62□□□□□ -0.71
CCDC88A-204ENST00000413716 Q71RC1 249 aaPredicted RBP10.62□□□□□ -0.71
CCDC88A-204ENST00000413716 TRAV26-1A0A087WT03 109 aa10.62□□□□□ -0.71
CCDC88A-204ENST00000413716 ADCYAP1P18509 176 aa10.62□□□□□ -0.71
CCDC88A-204ENST00000413716 PTPN13Q12923 2485 aa10.62□□□□□ -0.71
CCDC88A-204ENST00000413716 PCP2Q8IVA1 136 aa10.62□□□□□ -0.71
CCDC88A-204ENST00000413716 LYRM9A8MSI8 78 aa10.61□□□□□ -0.71
CCDC88A-204ENST00000413716 BPY2O14599 106 aa10.61□□□□□ -0.71
CCDC88A-204ENST00000413716 PNRC2Q9NPJ4 139 aaKnown RBP10.61□□□□□ -0.71
CCDC88A-204ENST00000413716 NDUFA1O15239 70 aa10.61□□□□□ -0.71
CCDC88A-204ENST00000413716 PRDM6Q9NQX0 595 aa10.61□□□□□ -0.71
CCDC88A-204ENST00000413716 KIR2DL5BQ8NHK3 375 aa10.61□□□□□ -0.71
CCDC88A-204ENST00000413716 TM2D2Q9BX73 214 aa10.61□□□□□ -0.71
CCDC88A-204ENST00000413716 TGFBR3LH3BV60 316 aa10.61□□□□□ -0.71
CCDC88A-204ENST00000413716 PLXNA4Q9HCM2 1894 aa10.61□□□□□ -0.71
CCDC88A-204ENST00000413716 IGKV1-27A0A075B6S5 117 aa10.6□□□□□ -0.71
CCDC88A-204ENST00000413716 LYPD3O95274 346 aa10.6□□□□□ -0.71
CCDC88A-204ENST00000413716 NUP210LQ5VU65 1888 aa10.6□□□□□ -0.71
CCDC88A-204ENST00000413716 ADAMTS7Q9UKP4 1686 aa10.6□□□□□ -0.71
CCDC88A-204ENST00000413716 LYPD6Q86Y78 171 aa10.6□□□□□ -0.71
CCDC88A-204ENST00000413716 K7EQD1 137 aa10.6□□□□□ -0.71
CCDC88A-204ENST00000413716 C1orf195Q5TG92 126 aa10.6□□□□□ -0.71
CCDC88A-204ENST00000413716 IGLV3-32A0A0A0MS00 114 aa10.6□□□□□ -0.71
CCDC88A-204ENST00000413716 UBE2E1P51965 193 aa10.6□□□□□ -0.71
CCDC88A-204ENST00000413716 ITGBL1O95965 494 aaPredicted RBP10.59□□□□□ -0.71
CCDC88A-204ENST00000413716 PRR30Q53SZ7 412 aaPredicted RBP10.59□□□□□ -0.71
CCDC88A-204ENST00000413716 THSD7AQ9UPZ6 1657 aa10.59□□□□□ -0.71
CCDC88A-204ENST00000413716 ATP5EP2Q5VTU8 51 aa10.59□□□□□ -0.71
CCDC88A-204ENST00000413716 H3BRN7 92 aa10.59□□□□□ -0.71
CCDC88A-204ENST00000413716 IGLV10-54A0A075B6I4 117 aa10.59□□□□□ -0.71
CCDC88A-204ENST00000413716 A0A0J9YY99 117 aa10.59□□□□□ -0.71
CCDC88A-204ENST00000413716 C5orf38Q86SI9 138 aa10.59□□□□□ -0.71
CCDC88A-204ENST00000413716 NDUFA4L2Q9NRX3 87 aa10.59□□□□□ -0.71
CCDC88A-204ENST00000413716 SONP18583 2426 aaKnown RBP10.59□□□□□ -0.71
CCDC88A-204ENST00000413716 CCL18P55774 89 aa10.59□□□□□ -0.71
CCDC88A-204ENST00000413716 CSRP2Q16527 193 aa10.58□□□□□ -0.71
CCDC88A-204ENST00000413716 Q6ZS49 121 aa10.58□□□□□ -0.71
CCDC88A-204ENST00000413716 A4D1N5 150 aa10.58□□□□□ -0.72
CCDC88A-204ENST00000413716 H3BT86 120 aa10.58□□□□□ -0.72
CCDC88A-204ENST00000413716 LECT2O14960 151 aa10.58□□□□□ -0.72
CCDC88A-204ENST00000413716 WISP1O95388 367 aa10.58□□□□□ -0.72
CCDC88A-204ENST00000413716 GYPEP15421 78 aa10.58□□□□□ -0.72
CCDC88A-204ENST00000413716 ALPK3Q96L96 1907 aa10.58□□□□□ -0.72
CCDC88A-204ENST00000413716 RBAKDNA6NC62 111 aa10.58□□□□□ -0.72
CCDC88A-204ENST00000413716 IGHV4-59P01825 116 aa10.58□□□□□ -0.72
CCDC88A-204ENST00000413716 HIST2H2BDQ6DRA6 164 aa10.58□□□□□ -0.72
CCDC88A-204ENST00000413716 C16orf74Q96GX8 76 aa10.58□□□□□ -0.72
CCDC88A-204ENST00000413716 LINC00643Q86TS7 51 aa10.57□□□□□ -0.72
CCDC88A-204ENST00000413716 VOPP1Q96AW1 172 aa10.57□□□□□ -0.72
CCDC88A-204ENST00000413716 FANCD2OSQ96PS1 177 aa10.57□□□□□ -0.72
CCDC88A-204ENST00000413716 IGKV1-12A0A0C4DH73 117 aa10.57□□□□□ -0.72
CCDC88A-204ENST00000413716 IGKV1D-12P01611 117 aa10.57□□□□□ -0.72
CCDC88A-204ENST00000413716 A0A087WV48 116 aa10.57□□□□□ -0.72
CCDC88A-204ENST00000413716 MST1P26927 711 aa10.57□□□□□ -0.72
CCDC88A-204ENST00000413716 Q6P435 159 aa10.57□□□□□ -0.72
CCDC88A-204ENST00000413716 CLEC2BQ92478 149 aa10.57□□□□□ -0.72
CCDC88A-204ENST00000413716 IGKV2D-26A0A0A0MRZ7 120 aa10.56□□□□□ -0.72
CCDC88A-204ENST00000413716 WDR86Q86TI4 376 aa10.56□□□□□ -0.72
CCDC88A-204ENST00000413716 SIP14410 1827 aa10.56□□□□□ -0.72
CCDC88A-204ENST00000413716 IGHV7-4-1A0A0J9YVY3 117 aa10.56□□□□□ -0.72
CCDC88A-204ENST00000413716 PRR4Q16378 134 aa10.56□□□□□ -0.72
CCDC88A-204ENST00000413716 FGF23Q9GZV9 251 aaPredicted RBP10.56□□□□□ -0.72
CCDC88A-204ENST00000413716 IGHV1-69DA0A0B4J2H0 117 aa10.56□□□□□ -0.72
CCDC88A-204ENST00000413716 WDR87Q6ZQQ6 2873 aa10.55□□□□□ -0.72
CCDC88A-204ENST00000413716 MSMBP08118 114 aa10.55□□□□□ -0.72
CCDC88A-204ENST00000413716 TNS1Q9HBL0 1735 aaKnown RBP10.55□□□□□ -0.72
CCDC88A-204ENST00000413716 WFDC10BQ8IUB3 73 aa10.55□□□□□ -0.72
CCDC88A-204ENST00000413716 ELANEP08246 267 aa10.55□□□□□ -0.72
CCDC88A-204ENST00000413716 DAND5Q8N907 189 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 100.2 ms