RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 UBE2E1P51965 193 aa9.29□□□□□ -0.92
SYNPO-202ENST00000394243 MRPL55Q7Z7F7 128 aaKnown RBP9.29□□□□□ -0.92
SYNPO-202ENST00000394243 DSCR9P59020 149 aa9.29□□□□□ -0.92
SYNPO-202ENST00000394243 TNRC6BQ9UPQ9 1833 aaKnown RBP9.29□□□□□ -0.92
SYNPO-202ENST00000394243 TRAV23DV6A0A075B6W5 121 aa9.29□□□□□ -0.92
SYNPO-202ENST00000394243 C17orf82Q86X59 251 aaPredicted RBP9.29□□□□□ -0.92
SYNPO-202ENST00000394243 LINC00311Q8N616 119 aa9.29□□□□□ -0.92
SYNPO-202ENST00000394243 OPRPNQ99935 248 aaPredicted RBP9.29□□□□□ -0.92
SYNPO-202ENST00000394243 LINC01619G3V211 115 aa9.28□□□□□ -0.92
SYNPO-202ENST00000394243 LINC00643Q86TS7 51 aa9.28□□□□□ -0.92
SYNPO-202ENST00000394243 ZNF503-AS2A6NEH8 195 aa9.28□□□□□ -0.92
SYNPO-202ENST00000394243 CSRP1P21291 193 aaKnown RBP9.28□□□□□ -0.92
SYNPO-202ENST00000394243 TSC2P49815 1807 aa9.28□□□□□ -0.92
SYNPO-202ENST00000394243 RPL39P62891 51 aaKnown RBP9.28□□□□□ -0.92
SYNPO-202ENST00000394243 ODF1Q14990 250 aa9.28□□□□□ -0.92
SYNPO-202ENST00000394243 C8orf31Q8N9H6 132 aa9.28□□□□□ -0.92
SYNPO-202ENST00000394243 PLCE1Q9P212 2302 aa9.28□□□□□ -0.92
SYNPO-202ENST00000394243 LECT2O14960 151 aa9.28□□□□□ -0.92
SYNPO-202ENST00000394243 IGHV7-4-1A0A0J9YVY3 117 aa9.28□□□□□ -0.92
SYNPO-202ENST00000394243 U3KQE9 123 aa9.28□□□□□ -0.92
SYNPO-202ENST00000394243 ABCA4P78363 2273 aa9.27□□□□□ -0.92
SYNPO-202ENST00000394243 UQCRQO14949 82 aa9.27□□□□□ -0.92
SYNPO-202ENST00000394243 LOXP28300 417 aaPredicted RBP9.27□□□□□ -0.92
SYNPO-202ENST00000394243 GATA4P43694 442 aa9.27□□□□□ -0.92
SYNPO-202ENST00000394243 V9GYY9 64 aa9.27□□□□□ -0.92
SYNPO-202ENST00000394243 Q8TCH9 128 aa9.27□□□□□ -0.93
SYNPO-202ENST00000394243 COL6A6A6NMZ7 2263 aa9.27□□□□□ -0.93
SYNPO-202ENST00000394243 NCKAP5O14513 1909 aa9.27□□□□□ -0.93
SYNPO-202ENST00000394243 RBX1P62877 108 aa9.27□□□□□ -0.93
SYNPO-202ENST00000394243 IGLV3-1P01715 115 aa9.27□□□□□ -0.93
SYNPO-202ENST00000394243 HIST2H2BCQ6DN03 193 aa9.27□□□□□ -0.93
SYNPO-202ENST00000394243 SIP14410 1827 aa9.27□□□□□ -0.93
SYNPO-202ENST00000394243 OBSL1O75147 1896 aa9.27□□□□□ -0.93
SYNPO-202ENST00000394243 NDUFA11Q86Y39 141 aa9.26□□□□□ -0.93
SYNPO-202ENST00000394243 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.26□□□□□ -0.93
SYNPO-202ENST00000394243 JMJD7-PLA2G4BH0Y9G9 81 aa9.26□□□□□ -0.93
SYNPO-202ENST00000394243 Q8N1Y9 231 aa9.26□□□□□ -0.93
SYNPO-202ENST00000394243 TOMM6Q96B49 74 aa9.26□□□□□ -0.93
SYNPO-202ENST00000394243 GP9P14770 177 aa9.26□□□□□ -0.93
SYNPO-202ENST00000394243 SPANXB1Q9NS25 103 aaPredicted RBP9.26□□□□□ -0.93
SYNPO-202ENST00000394243 UBE2BP63146 152 aa9.26□□□□□ -0.93
SYNPO-202ENST00000394243 IGLC6P0CF74 106 aa9.25□□□□□ -0.93
SYNPO-202ENST00000394243 VWA8A3KMH1 1905 aa9.25□□□□□ -0.93
SYNPO-202ENST00000394243 Q6ZQT7 251 aa9.25□□□□□ -0.93
SYNPO-202ENST00000394243 NOP10Q9NPE3 64 aaKnown RBP9.25□□□□□ -0.93
SYNPO-202ENST00000394243 IGLV3-9A0A075B6K5 115 aa9.25□□□□□ -0.93
SYNPO-202ENST00000394243 Q71RC1 249 aaPredicted RBP9.25□□□□□ -0.93
SYNPO-202ENST00000394243 C2orf70A6NJV1 201 aa9.25□□□□□ -0.93
SYNPO-202ENST00000394243 PLXNA3P51805 1871 aa9.25□□□□□ -0.93
SYNPO-202ENST00000394243 CACNA1HO95180 2353 aa9.25□□□□□ -0.93
SYNPO-202ENST00000394243 LY6DQ14210 128 aa9.25□□□□□ -0.93
SYNPO-202ENST00000394243 C20orf197Q8N268 126 aa9.25□□□□□ -0.93
SYNPO-202ENST00000394243 TEX49A0A1B0GTD5 131 aa9.24□□□□□ -0.93
SYNPO-202ENST00000394243 C11orf86A6NJI1 115 aa9.24□□□□□ -0.93
SYNPO-202ENST00000394243 Q9HAA7 133 aa9.24□□□□□ -0.93
SYNPO-202ENST00000394243 PCNX1Q96RV3 2341 aa9.24□□□□□ -0.93
SYNPO-202ENST00000394243 LENEPQ9Y5L5 61 aa9.24□□□□□ -0.93
SYNPO-202ENST00000394243 C22orf46C9J442 243 aa9.24□□□□□ -0.93
SYNPO-202ENST00000394243 CD59P13987 128 aa9.24□□□□□ -0.93
SYNPO-202ENST00000394243 C3orf22Q8N5N4 141 aa9.24□□□□□ -0.93
SYNPO-202ENST00000394243 BUB3O43684 328 aa9.24□□□□□ -0.93
SYNPO-202ENST00000394243 TRBV12-3P01733 135 aa9.24□□□□□ -0.93
SYNPO-202ENST00000394243 PATE2Q6UY27 113 aa9.24□□□□□ -0.93
SYNPO-202ENST00000394243 IGHV1-69P01742 117 aa9.24□□□□□ -0.93
SYNPO-202ENST00000394243 SDIM1Q6ZPB5 146 aa9.24□□□□□ -0.93
SYNPO-202ENST00000394243 FAM236DA0A1B0GTK5 79 aa9.23□□□□□ -0.93
SYNPO-202ENST00000394243 FAM236CP0DP71 79 aa9.23□□□□□ -0.93
SYNPO-202ENST00000394243 ETV2O00321 342 aaPredicted RBP9.23□□□□□ -0.93
SYNPO-202ENST00000394243 PIFOQ8TCI5 191 aa9.23□□□□□ -0.93
SYNPO-202ENST00000394243 UPK3BQ9BT76 320 aa9.23□□□□□ -0.93
SYNPO-202ENST00000394243 PROP1O75360 226 aa9.23□□□□□ -0.93
SYNPO-202ENST00000394243 ETDCA0A1B0GVM5 59 aa9.23□□□□□ -0.93
SYNPO-202ENST00000394243 LINC01356Q8N9X3 169 aa9.23□□□□□ -0.93
SYNPO-202ENST00000394243 TP73-AS1Q9UF72 201 aa9.23□□□□□ -0.93
SYNPO-202ENST00000394243 TNS1Q9HBL0 1735 aaKnown RBP9.23□□□□□ -0.93
SYNPO-202ENST00000394243 FAM167A-AS1Q96KT0 104 aa9.23□□□□□ -0.93
SYNPO-202ENST00000394243 NCR3O14931 201 aa9.22□□□□□ -0.93
SYNPO-202ENST00000394243 HIGD2BQ4VC39 106 aa9.22□□□□□ -0.93
SYNPO-202ENST00000394243 WI2-2373I1.2A0A1W2PRP0 233 aa9.22□□□□□ -0.93
SYNPO-202ENST00000394243 RNF152Q8N8N0 203 aa9.22□□□□□ -0.93
SYNPO-202ENST00000394243 PLXNA4Q9HCM2 1894 aa9.22□□□□□ -0.93
SYNPO-202ENST00000394243 IGKV2D-26A0A0A0MRZ7 120 aa9.22□□□□□ -0.93
SYNPO-202ENST00000394243 MED13Q9UHV7 2174 aa9.21□□□□□ -0.93
SYNPO-202ENST00000394243 A0A0J9YY99 117 aa9.21□□□□□ -0.93
SYNPO-202ENST00000394243 TMEM256-PLSCR3K7ERE1 68 aa9.21□□□□□ -0.93
SYNPO-202ENST00000394243 FAM240AA0A1B0GVK7 77 aa9.21□□□□□ -0.93
SYNPO-202ENST00000394243 PROK2Q9HC23 129 aa9.21□□□□□ -0.94
SYNPO-202ENST00000394243 IGKV1OR2-108A0A075B7D4 117 aa9.21□□□□□ -0.94
SYNPO-202ENST00000394243 H3BQ85 93 aa9.21□□□□□ -0.94
SYNPO-202ENST00000394243 LHBP01229 141 aa9.21□□□□□ -0.94
SYNPO-202ENST00000394243 IGLV10-54A0A075B6I4 117 aa9.21□□□□□ -0.94
SYNPO-202ENST00000394243 CGB3P0DN86 165 aa9.21□□□□□ -0.94
SYNPO-202ENST00000394243 LYPD6Q86Y78 171 aa9.21□□□□□ -0.94
SYNPO-202ENST00000394243 IGKV2D-24A0A075B6R9 120 aa9.2□□□□□ -0.94
SYNPO-202ENST00000394243 NDUFC2-KCTD14E9PQ53 114 aa9.2□□□□□ -0.94
SYNPO-202ENST00000394243 MSMBP08118 114 aa9.2□□□□□ -0.94
SYNPO-202ENST00000394243 LOXL1Q08397 574 aaPredicted RBP9.2□□□□□ -0.94
SYNPO-202ENST00000394243 CRIPAKQ8N1N5 446 aa9.2□□□□□ -0.94
SYNPO-202ENST00000394243 RPL18AQ02543 176 aaKnown RBP9.2□□□□□ -0.94
SYNPO-202ENST00000394243 NDUFB1O75438 58 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms