RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 COL6A6A6NMZ7 2263 aa10.02□□□□□ -0.8
CCDC88C-204ENST00000389857 A0A0B4J2C4 111 aa10.02□□□□□ -0.8
CCDC88C-204ENST00000389857 HIST2H2BCQ6DN03 193 aa10.02□□□□□ -0.81
CCDC88C-204ENST00000389857 NPBQ8NG41 125 aa10.02□□□□□ -0.81
CCDC88C-204ENST00000389857 AGPAT4-IT1Q9H0P7 198 aa10.02□□□□□ -0.81
CCDC88C-204ENST00000389857 SPTBN1Q01082 2364 aaKnown RBP10.02□□□□□ -0.81
CCDC88C-204ENST00000389857 SLURP1P55000 103 aa10.02□□□□□ -0.81
CCDC88C-204ENST00000389857 IGFBPL1Q8WX77 278 aa10.02□□□□□ -0.81
CCDC88C-204ENST00000389857 IGLC7A0M8Q6 106 aa10.02□□□□□ -0.81
CCDC88C-204ENST00000389857 F8W735 103 aaPredicted RBP10.02□□□□□ -0.81
CCDC88C-204ENST00000389857 RS1O15537 224 aa10.02□□□□□ -0.81
CCDC88C-204ENST00000389857 IGHV3-30P01768 117 aa10.02□□□□□ -0.81
CCDC88C-204ENST00000389857 IGHV3-33P01772 117 aa10.02□□□□□ -0.81
CCDC88C-204ENST00000389857 IGHV3-30-3P0DP02 117 aa10.02□□□□□ -0.81
CCDC88C-204ENST00000389857 IGHV3-30-5P0DP03 117 aa10.02□□□□□ -0.81
CCDC88C-204ENST00000389857 ZNF503-AS2A6NEH8 195 aa10.02□□□□□ -0.81
CCDC88C-204ENST00000389857 NREPQ16612 68 aa10.02□□□□□ -0.81
CCDC88C-204ENST00000389857 DEFB136Q30KP8 78 aa10.02□□□□□ -0.81
CCDC88C-204ENST00000389857 PRSS33Q8NF86 280 aa10.02□□□□□ -0.81
CCDC88C-204ENST00000389857 KLF2Q9Y5W3 355 aaPredicted RBP10.01□□□□□ -0.81
CCDC88C-204ENST00000389857 SEC61GP60059 68 aa10.01□□□□□ -0.81
CCDC88C-204ENST00000389857 ZNF747Q9BV97 191 aa10.01□□□□□ -0.81
CCDC88C-204ENST00000389857 NPSP0C0P6 89 aa10.01□□□□□ -0.81
CCDC88C-204ENST00000389857 PRR20EP86478 221 aa10.01□□□□□ -0.81
CCDC88C-204ENST00000389857 PRR20CP86479 221 aa10.01□□□□□ -0.81
CCDC88C-204ENST00000389857 PRR20DP86480 221 aa10.01□□□□□ -0.81
CCDC88C-204ENST00000389857 PRR20BP86481 221 aa10.01□□□□□ -0.81
CCDC88C-204ENST00000389857 PRR20AP86496 221 aa10.01□□□□□ -0.81
CCDC88C-204ENST00000389857 NUP210Q8TEM1 1887 aaPredicted RBP10.01□□□□□ -0.81
CCDC88C-204ENST00000389857 NDUFA1O15239 70 aa10.01□□□□□ -0.81
CCDC88C-204ENST00000389857 LY6G6EA0A0G2JKS1 128 aa10□□□□□ -0.81
CCDC88C-204ENST00000389857 C1orf147Q96MC9 270 aaPredicted RBP10□□□□□ -0.81
CCDC88C-204ENST00000389857 KLK5Q9Y337 293 aaPredicted RBP10□□□□□ -0.81
CCDC88C-204ENST00000389857 FAM215AQ9Y5M1 114 aa10□□□□□ -0.81
CCDC88C-204ENST00000389857 U3KQA8 63 aa10□□□□□ -0.81
CCDC88C-204ENST00000389857 TANC1Q9C0D5 1861 aa10□□□□□ -0.81
CCDC88C-204ENST00000389857 ANAPC1Q9H1A4 1944 aa10□□□□□ -0.81
CCDC88C-204ENST00000389857 CENPVL3A0A0U1RRI6 287 aa10□□□□□ -0.81
CCDC88C-204ENST00000389857 IGLL5B9A064 214 aa10□□□□□ -0.81
CCDC88C-204ENST00000389857 ASPHD1Q5U4P2 390 aa10□□□□□ -0.81
CCDC88C-204ENST00000389857 AMTNQ6UX39 209 aa10□□□□□ -0.81
CCDC88C-204ENST00000389857 PSMB8P28062 276 aa10□□□□□ -0.81
CCDC88C-204ENST00000389857 PLA2G2CQ5R387 149 aa10□□□□□ -0.81
CCDC88C-204ENST00000389857 C14orf132Q9NPU4 83 aa10□□□□□ -0.81
CCDC88C-204ENST00000389857 IGLV10-54A0A075B6I4 117 aa9.99□□□□□ -0.81
CCDC88C-204ENST00000389857 ATOX1O00244 68 aa9.99□□□□□ -0.81
CCDC88C-204ENST00000389857 CXCL5P42830 114 aa9.99□□□□□ -0.81
CCDC88C-204ENST00000389857 RPL39LQ96EH5 51 aaKnown RBP9.99□□□□□ -0.81
CCDC88C-204ENST00000389857 COL4A6Q14031 1691 aa9.98□□□□□ -0.81
CCDC88C-204ENST00000389857 PROP1O75360 226 aa9.98□□□□□ -0.81
CCDC88C-204ENST00000389857 HHLA3Q9XRX5 114 aa9.98□□□□□ -0.81
CCDC88C-204ENST00000389857 NLRC5Q86WI3 1866 aa9.98□□□□□ -0.81
CCDC88C-204ENST00000389857 SMIM20Q8N5G0 67 aa9.98□□□□□ -0.81
CCDC88C-204ENST00000389857 PRB1P04280 392 aa9.98□□□□□ -0.81
CCDC88C-204ENST00000389857 ARTNQ5T4W7 220 aa9.98□□□□□ -0.81
CCDC88C-204ENST00000389857 NCR3O14931 201 aa9.97□□□□□ -0.81
CCDC88C-204ENST00000389857 C16orf54Q6UWD8 224 aa9.97□□□□□ -0.81
CCDC88C-204ENST00000389857 TRBV7-3A0A075B6L6 115 aa9.97□□□□□ -0.81
CCDC88C-204ENST00000389857 MUSTN1Q8IVN3 82 aa9.97□□□□□ -0.81
CCDC88C-204ENST00000389857 HIGD2BQ4VC39 106 aa9.97□□□□□ -0.81
CCDC88C-204ENST00000389857 ZNF407Q9C0G0 2248 aa9.97□□□□□ -0.81
CCDC88C-204ENST00000389857 JMJD7-PLA2G4BH0Y9G9 81 aa9.96□□□□□ -0.81
CCDC88C-204ENST00000389857 PCP2Q8IVA1 136 aa9.96□□□□□ -0.81
CCDC88C-204ENST00000389857 IGLV3-1P01715 115 aa9.96□□□□□ -0.81
CCDC88C-204ENST00000389857 BAALCQ8WXS3 180 aa9.96□□□□□ -0.81
CCDC88C-204ENST00000389857 LINC01620Q4KN68 170 aa9.95□□□□□ -0.82
CCDC88C-204ENST00000389857 FANCD2OSQ96PS1 177 aa9.95□□□□□ -0.82
CCDC88C-204ENST00000389857 CACNA1EQ15878 2313 aa9.95□□□□□ -0.82
CCDC88C-204ENST00000389857 SEM1Q6ZVN7 128 aa9.95□□□□□ -0.82
CCDC88C-204ENST00000389857 AJUBAQ96IF1 538 aa9.95□□□□□ -0.82
CCDC88C-204ENST00000389857 CTSZQ9UBR2 303 aa9.95□□□□□ -0.82
CCDC88C-204ENST00000389857 I3L2K1 104 aa9.95□□□□□ -0.82
CCDC88C-204ENST00000389857 TMEM61Q8N0U2 210 aa9.95□□□□□ -0.82
CCDC88C-204ENST00000389857 DIRC1Q969H9 104 aa9.95□□□□□ -0.82
CCDC88C-204ENST00000389857 WNK2Q9Y3S1 2297 aa9.94□□□□□ -0.82
CCDC88C-204ENST00000389857 IGHV7-81A0A0B4J1V7 117 aa9.94□□□□□ -0.82
CCDC88C-204ENST00000389857 CCL25O15444 150 aa9.94□□□□□ -0.82
CCDC88C-204ENST00000389857 IGHV4-38-2P0DP08 117 aa9.94□□□□□ -0.82
CCDC88C-204ENST00000389857 C4orf3Q8WVX3 66 aa9.94□□□□□ -0.82
CCDC88C-204ENST00000389857 B9D2Q9BPU9 175 aa9.94□□□□□ -0.82
CCDC88C-204ENST00000389857 TNRC6BQ9UPQ9 1833 aaKnown RBP9.94□□□□□ -0.82
CCDC88C-204ENST00000389857 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.94□□□□□ -0.825e-6■■■□□ 17.2
CCDC88C-204ENST00000389857 IGLV11-55A0A075B6I3 123 aa9.94□□□□□ -0.82
CCDC88C-204ENST00000389857 PIP4P1Q86T03 277 aa9.94□□□□□ -0.82
CCDC88C-204ENST00000389857 GATA1P15976 413 aaPredicted RBP9.93□□□□□ -0.82
CCDC88C-204ENST00000389857 IGKV3D-7A0A0C4DH55 119 aa9.93□□□□□ -0.82
CCDC88C-204ENST00000389857 SPATA25Q9BR10 227 aa9.93□□□□□ -0.82
CCDC88C-204ENST00000389857 DENND4AQ7Z401 1863 aa9.93□□□□□ -0.82
CCDC88C-204ENST00000389857 TMEM256-PLSCR3K7ERE1 68 aa9.93□□□□□ -0.82
CCDC88C-204ENST00000389857 TOMM6Q96B49 74 aa9.93□□□□□ -0.82
CCDC88C-204ENST00000389857 C5orf56Q8N8D9 126 aa9.93□□□□□ -0.82
CCDC88C-204ENST00000389857 RSPO1Q2MKA7 263 aaPredicted RBP9.93□□□□□ -0.82
CCDC88C-204ENST00000389857 MED14OSP0DP75 135 aa9.92□□□□□ -0.82
CCDC88C-204ENST00000389857 IL17DQ8TAD2 202 aa9.92□□□□□ -0.82
CCDC88C-204ENST00000389857 A4D1N5 150 aa9.92□□□□□ -0.82
CCDC88C-204ENST00000389857 SLX1AQ9BQ83 275 aa9.92□□□□□ -0.82
CCDC88C-204ENST00000389857 IGHV4OR15-8A0A075B7B6 117 aa9.92□□□□□ -0.82
CCDC88C-204ENST00000389857 IGHV4-30-2A0A087WSY4 118 aa9.92□□□□□ -0.82
CCDC88C-204ENST00000389857 A0A087WW49 117 aa9.92□□□□□ -0.82
CCDC88C-204ENST00000389857 OBSL1O75147 1896 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 97.4 ms