RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.42□□□□□ -0.9
CIITA-202ENST00000381835 ATRQ13535 2644 aa9.42□□□□□ -0.9
CIITA-202ENST00000381835 TMSB15BA0A087X1C1 80 aa9.41□□□□□ -0.9
CIITA-202ENST00000381835 TRAV8-6A0A0B4J262 113 aa9.41□□□□□ -0.9
CIITA-202ENST00000381835 IGHV7-4-1A0A0J9YVY3 117 aa9.41□□□□□ -0.9
CIITA-202ENST00000381835 C7orf71A4D174 169 aa9.41□□□□□ -0.9
CIITA-202ENST00000381835 LYZL1Q6UWQ5 148 aa9.41□□□□□ -0.9
CIITA-202ENST00000381835 AAMDCQ9H7C9 122 aa9.41□□□□□ -0.9
CIITA-202ENST00000381835 SIGLEC8Q9NYZ4 499 aa9.41□□□□□ -0.9
CIITA-202ENST00000381835 UFC1Q9Y3C8 167 aa9.41□□□□□ -0.9
CIITA-202ENST00000381835 TMEM189A5PLL7 270 aa9.4□□□□□ -0.9
CIITA-202ENST00000381835 K7EMT4 169 aa9.4□□□□□ -0.9
CIITA-202ENST00000381835 SEC11AP67812 179 aa9.4□□□□□ -0.9
CIITA-202ENST00000381835 WFDC12Q8WWY7 111 aa9.4□□□□□ -0.9
CIITA-202ENST00000381835 PRELID3AQ96N28 172 aa9.4□□□□□ -0.9
CIITA-202ENST00000381835 RHPN1-AS1Q9BWJ2 59 aa9.4□□□□□ -0.9
CIITA-202ENST00000381835 A0A096LNJ9 63 aa9.4□□□□□ -0.9
CIITA-202ENST00000381835 GAGE12BA1L429 117 aa9.4□□□□□ -0.9
CIITA-202ENST00000381835 TMEM213A2RRL7 107 aa9.4□□□□□ -0.9
CIITA-202ENST00000381835 AMN1Q8IY45 258 aa9.4□□□□□ -0.9
CIITA-202ENST00000381835 RAX2Q96IS3 184 aa9.4□□□□□ -0.9
CIITA-202ENST00000381835 KRTAP10-3P60369 221 aa9.39□□□□□ -0.91
CIITA-202ENST00000381835 NSUN5P1Q3KNT7 163 aa9.39□□□□□ -0.91
CIITA-202ENST00000381835 FAM104BQ5XKR9 115 aa9.39□□□□□ -0.91
CIITA-202ENST00000381835 ORMDL3Q8N138 153 aa9.39□□□□□ -0.91
CIITA-202ENST00000381835 GLMPQ8WWB7 406 aa9.39□□□□□ -0.91
CIITA-202ENST00000381835 SMPXQ9UHP9 88 aa9.39□□□□□ -0.91
CIITA-202ENST00000381835 TENM1Q9UKZ4 2725 aa9.39□□□□□ -0.91
CIITA-202ENST00000381835 LGALS9O00182 355 aa9.39□□□□□ -0.91
CIITA-202ENST00000381835 RPL11P62913 178 aaKnown RBP9.39□□□□□ -0.91
CIITA-202ENST00000381835 IGFL4Q6B9Z1 124 aa9.39□□□□□ -0.91
CIITA-202ENST00000381835 U3KQK5 164 aa9.39□□□□□ -0.91
CIITA-202ENST00000381835 IGKV3-7A0A075B6H7 116 aa9.38□□□□□ -0.91
CIITA-202ENST00000381835 CCL24O00175 119 aa9.38□□□□□ -0.91
CIITA-202ENST00000381835 SH2D1AO60880 128 aa9.38□□□□□ -0.91
CIITA-202ENST00000381835 FGF6P10767 208 aa9.38□□□□□ -0.91
CIITA-202ENST00000381835 TCTAP57738 103 aa9.38□□□□□ -0.91
CIITA-202ENST00000381835 FXYD7P58549 80 aa9.38□□□□□ -0.91
CIITA-202ENST00000381835 CACNG7P62955 275 aa9.38□□□□□ -0.91
CIITA-202ENST00000381835 PDE6HQ13956 83 aa9.38□□□□□ -0.91
CIITA-202ENST00000381835 LGALS9BQ3B8N2 356 aa9.38□□□□□ -0.91
CIITA-202ENST00000381835 LGALS9CQ6DKI2 356 aa9.38□□□□□ -0.91
CIITA-202ENST00000381835 DLX4Q92988 240 aaPredicted RBP9.38□□□□□ -0.91
CIITA-202ENST00000381835 AP1S3Q96PC3 154 aa9.38□□□□□ -0.91
CIITA-202ENST00000381835 GAGE10A6NGK3 116 aa9.38□□□□□ -0.91
CIITA-202ENST00000381835 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.38□□□□□ -0.91
CIITA-202ENST00000381835 A6NDN8 102 aa9.37□□□□□ -0.91
CIITA-202ENST00000381835 HBDP02042 147 aa9.37□□□□□ -0.91
CIITA-202ENST00000381835 MRPL51Q4U2R6 128 aaKnown RBP9.37□□□□□ -0.91
CIITA-202ENST00000381835 K7ERU9 68 aa9.37□□□□□ -0.91
CIITA-202ENST00000381835 CKS2P33552 79 aa9.37□□□□□ -0.91
CIITA-202ENST00000381835 BOD1L2Q8IYS8 172 aa9.37□□□□□ -0.91
CIITA-202ENST00000381835 SORL1Q92673 2214 aa9.36□□□□□ -0.91
CIITA-202ENST00000381835 ADARB2-AS1A8MUL3 147 aa9.36□□□□□ -0.91
CIITA-202ENST00000381835 HLA-DMBP28068 263 aa9.36□□□□□ -0.91
CIITA-202ENST00000381835 FHL3Q13643 280 aa9.36□□□□□ -0.91
CIITA-202ENST00000381835 TWIST1Q15672 202 aa9.36□□□□□ -0.91
CIITA-202ENST00000381835 OR9G4Q8NGQ1 327 aa9.36□□□□□ -0.91
CIITA-202ENST00000381835 IGKV2-40A0A087WW87 121 aaPredicted RBP9.36□□□□□ -0.91
CIITA-202ENST00000381835 SMKR1H3BMG3 65 aa9.36□□□□□ -0.91
CIITA-202ENST00000381835 H3BRM9 83 aa9.36□□□□□ -0.91
CIITA-202ENST00000381835 IGKV2D-40P01614 121 aaPredicted RBP9.36□□□□□ -0.91
CIITA-202ENST00000381835 GTF2H5Q6ZYL4 71 aa9.36□□□□□ -0.91
CIITA-202ENST00000381835 IFI27L1Q96BM0 104 aa9.36□□□□□ -0.91
CIITA-202ENST00000381835 PEMTQ9UBM1 199 aa9.36□□□□□ -0.91
CIITA-202ENST00000381835 C9orf118A6NHY6 69 aa9.35□□□□□ -0.91
CIITA-202ENST00000381835 RNF182Q8N6D2 247 aa9.35□□□□□ -0.91
CIITA-202ENST00000381835 NPYP01303 97 aa9.34□□□□□ -0.91
CIITA-202ENST00000381835 HSD52Q0P140 79 aa9.34□□□□□ -0.91
CIITA-202ENST00000381835 ADAMTSL5Q6ZMM2 481 aa9.34□□□□□ -0.91
CIITA-202ENST00000381835 FER1L6-AS1Q8NA97 138 aa9.34□□□□□ -0.91
CIITA-202ENST00000381835 C16orf92Q96LL3 132 aa9.34□□□□□ -0.91
CIITA-202ENST00000381835 SLC50A1Q9BRV3 221 aa9.34□□□□□ -0.91
CIITA-202ENST00000381835 H3BUT2 72 aa9.34□□□□□ -0.91
CIITA-202ENST00000381835 NMUP48645 174 aa9.34□□□□□ -0.91
CIITA-202ENST00000381835 NDUFA11Q86Y39 141 aa9.34□□□□□ -0.91
CIITA-202ENST00000381835 PRR25Q96S07 402 aa9.34□□□□□ -0.91
CIITA-202ENST00000381835 SIVA1O15304 175 aa9.33□□□□□ -0.92
CIITA-202ENST00000381835 KIR3DS1Q14943 382 aa9.33□□□□□ -0.92
CIITA-202ENST00000381835 WFDC3Q8IUB2 231 aa9.33□□□□□ -0.92
CIITA-202ENST00000381835 TRAV8-2A0A0B4J237 113 aa9.33□□□□□ -0.92
CIITA-202ENST00000381835 KRTAP24-1Q3LI83 254 aa9.33□□□□□ -0.92
CIITA-202ENST00000381835 UFSP1Q6NVU6 142 aa9.33□□□□□ -0.92
CIITA-202ENST00000381835 PRIMA1Q86XR5 153 aa9.33□□□□□ -0.92
CIITA-202ENST00000381835 Q8TAT8 98 aa9.33□□□□□ -0.92
CIITA-202ENST00000381835 NAA38Q9BRA0 125 aaKnown RBP9.33□□□□□ -0.92
CIITA-202ENST00000381835 A0A1B0GV72 72 aa9.32□□□□□ -0.92
CIITA-202ENST00000381835 OVOL1O14753 267 aa9.32□□□□□ -0.92
CIITA-202ENST00000381835 ZNF80P51504 273 aaPredicted RBP9.32□□□□□ -0.92
CIITA-202ENST00000381835 COX8CQ7Z4L0 72 aa9.32□□□□□ -0.92
CIITA-202ENST00000381835 PCP2Q8IVA1 136 aa9.32□□□□□ -0.92
CIITA-202ENST00000381835 RAB37Q96AX2 223 aa9.32□□□□□ -0.92
CIITA-202ENST00000381835 FBN1P35555 2871 aaKnown RBP9.32□□□□□ -0.92
CIITA-202ENST00000381835 SCGB1A1P11684 91 aa9.32□□□□□ -0.92
CIITA-202ENST00000381835 C18orf15Q96N68 181 aa9.32□□□□□ -0.92
CIITA-202ENST00000381835 DKK2Q9UBU2 259 aa9.32□□□□□ -0.92
CIITA-202ENST00000381835 FBLL1A6NHQ2 334 aaKnown RBP9.31□□□□□ -0.92
CIITA-202ENST00000381835 K7EP34 96 aa9.31□□□□□ -0.92
CIITA-202ENST00000381835 ORM1P02763 201 aa9.31□□□□□ -0.92
CIITA-202ENST00000381835 DYNLRB2Q8TF09 96 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms