RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 PTTG1IPP53801 180 aa11.55□□□□□ -0.56
UPF3B-202ENST00000345865 UBE2V1Q13404 147 aa11.55□□□□□ -0.56
UPF3B-202ENST00000345865 ZNF688P0C7X2 276 aa11.55□□□□□ -0.56
UPF3B-202ENST00000345865 MED14OSP0DP75 135 aa11.55□□□□□ -0.56
UPF3B-202ENST00000345865 TMEM97Q5BJF2 176 aa11.55□□□□□ -0.56
UPF3B-202ENST00000345865 TTTY13Q9BZ97 58 aa11.55□□□□□ -0.56
UPF3B-202ENST00000345865 IGHV4-31P0DP07 118 aa11.54□□□□□ -0.56
UPF3B-202ENST00000345865 ZNF843Q8N446 348 aa11.54□□□□□ -0.56
UPF3B-202ENST00000345865 VPREB3Q9UKI3 123 aa11.54□□□□□ -0.56
UPF3B-202ENST00000345865 C7orf71A4D174 169 aa11.54□□□□□ -0.56
UPF3B-202ENST00000345865 IGKCP01834 107 aa11.54□□□□□ -0.56
UPF3B-202ENST00000345865 ID1P41134 155 aa11.54□□□□□ -0.56
UPF3B-202ENST00000345865 SYNJ2BPP57105 145 aa11.54□□□□□ -0.56
UPF3B-202ENST00000345865 SUMO2P61956 95 aaKnown RBP11.54□□□□□ -0.56
UPF3B-202ENST00000345865 Q6YL49 198 aa11.54□□□□□ -0.56
UPF3B-202ENST00000345865 ADAMTSL5Q6ZMM2 481 aa11.54□□□□□ -0.56
UPF3B-202ENST00000345865 DUX5Q96PT3 197 aa11.54□□□□□ -0.56
UPF3B-202ENST00000345865 ZNF702PQ9H963 129 aa11.54□□□□□ -0.56
UPF3B-202ENST00000345865 TMEM89A2RUT3 159 aa11.53□□□□□ -0.56
UPF3B-202ENST00000345865 CBY3A6NI87 242 aa11.53□□□□□ -0.56
UPF3B-202ENST00000345865 MGPP08493 103 aa11.53□□□□□ -0.56
UPF3B-202ENST00000345865 LINC00315P59091 139 aa11.53□□□□□ -0.56
UPF3B-202ENST00000345865 PSMG4Q5JS54 123 aa11.53□□□□□ -0.56
UPF3B-202ENST00000345865 JPT2Q9H910 190 aa11.53□□□□□ -0.56
UPF3B-202ENST00000345865 BEX4Q9NWD9 120 aaPredicted RBP11.53□□□□□ -0.56
UPF3B-202ENST00000345865 MRPL35Q9NZE8 188 aaKnown RBP11.53□□□□□ -0.56
UPF3B-202ENST00000345865 KIF25-AS1Q9Y6Z4 181 aa11.53□□□□□ -0.56
UPF3B-202ENST00000345865 IGHV4OR15-8A0A075B7B6 117 aa11.53□□□□□ -0.56
UPF3B-202ENST00000345865 A0A087WW49 117 aa11.53□□□□□ -0.56
UPF3B-202ENST00000345865 TRAV12-3A0A0B4J271 114 aa11.53□□□□□ -0.56
UPF3B-202ENST00000345865 ATP5LO75964 103 aa11.53□□□□□ -0.56
UPF3B-202ENST00000345865 MYOZ3Q8TDC0 251 aa11.53□□□□□ -0.56
UPF3B-202ENST00000345865 APCP25054 2843 aa11.52□□□□□ -0.56
UPF3B-202ENST00000345865 NXPH4O95158 308 aa11.52□□□□□ -0.57
UPF3B-202ENST00000345865 GTSCR1Q86UQ5 136 aa11.52□□□□□ -0.57
UPF3B-202ENST00000345865 CREBBPQ92793 2442 aa11.52□□□□□ -0.57
UPF3B-202ENST00000345865 EPG5Q9HCE0 2579 aa11.52□□□□□ -0.57
UPF3B-202ENST00000345865 HOXA3O43365 443 aaPredicted RBP11.52□□□□□ -0.57
UPF3B-202ENST00000345865 IGKV3-20P01619 116 aa11.52□□□□□ -0.57
UPF3B-202ENST00000345865 OR9G4Q8NGQ1 327 aa11.52□□□□□ -0.57
UPF3B-202ENST00000345865 TMEM160Q9NX00 188 aa11.52□□□□□ -0.57
UPF3B-202ENST00000345865 TRAV12-2A0A075B6T6 113 aa11.51□□□□□ -0.57
UPF3B-202ENST00000345865 K7EQG2 157 aa11.51□□□□□ -0.57
UPF3B-202ENST00000345865 DPM2O94777 84 aa11.51□□□□□ -0.57
UPF3B-202ENST00000345865 VAMP3Q15836 100 aa11.51□□□□□ -0.57
UPF3B-202ENST00000345865 ZC2HC1BQ5TFG8 222 aa11.51□□□□□ -0.57
UPF3B-202ENST00000345865 FAM159AQ6UWV7 190 aa11.51□□□□□ -0.57
UPF3B-202ENST00000345865 C20orf78Q9BR46 151 aa11.51□□□□□ -0.57
UPF3B-202ENST00000345865 CUBNO60494 3623 aa11.51□□□□□ -0.57
UPF3B-202ENST00000345865 SIVA1O15304 175 aa11.51□□□□□ -0.57
UPF3B-202ENST00000345865 LGALS1P09382 135 aaKnown RBP11.51□□□□□ -0.57
UPF3B-202ENST00000345865 POM121L12Q8N7R1 296 aa11.51□□□□□ -0.57
UPF3B-202ENST00000345865 AP1S3Q96PC3 154 aa11.51□□□□□ -0.57
UPF3B-202ENST00000345865 A0A0J9YX75 114 aa11.5□□□□□ -0.57
UPF3B-202ENST00000345865 C18orf65Q6ZTR6 163 aa11.5□□□□□ -0.57
UPF3B-202ENST00000345865 PRRC2AP48634 2157 aaKnown RBP11.5□□□□□ -0.57
UPF3B-202ENST00000345865 A0A087WX48 190 aa11.49□□□□□ -0.57
UPF3B-202ENST00000345865 TRAV8-6A0A0B4J262 113 aa11.49□□□□□ -0.57
UPF3B-202ENST00000345865 CD7P09564 240 aa11.49□□□□□ -0.57
UPF3B-202ENST00000345865 HOXD3P31249 432 aaPredicted RBP11.49□□□□□ -0.57
UPF3B-202ENST00000345865 TLN2Q9Y4G6 2542 aa11.49□□□□□ -0.57
UPF3B-202ENST00000345865 SEC11AP67812 179 aa11.49□□□□□ -0.57
UPF3B-202ENST00000345865 SAMD13Q5VXD3 122 aa11.49□□□□□ -0.57
UPF3B-202ENST00000345865 NEGR1Q7Z3B1 354 aa11.49□□□□□ -0.57
UPF3B-202ENST00000345865 TOMM6Q96B49 74 aa11.49□□□□□ -0.57
UPF3B-202ENST00000345865 MYO9AB2RTY4 2548 aa11.48□□□□□ -0.57
UPF3B-202ENST00000345865 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.48□□□□□ -0.57
UPF3B-202ENST00000345865 ELANEP08246 267 aa11.48□□□□□ -0.57
UPF3B-202ENST00000345865 ORMDL2Q53FV1 153 aa11.48□□□□□ -0.57
UPF3B-202ENST00000345865 AMMECR1LQ6DCA0 310 aa11.48□□□□□ -0.57
UPF3B-202ENST00000345865 HSD52Q0P140 79 aa11.48□□□□□ -0.57
UPF3B-202ENST00000345865 Q5PR19 223 aa11.48□□□□□ -0.57
UPF3B-202ENST00000345865 DEFB104AQ8WTQ1 72 aa11.48□□□□□ -0.57
UPF3B-202ENST00000345865 UBE2E2Q96LR5 201 aa11.48□□□□□ -0.57
UPF3B-202ENST00000345865 MDFICQ9P1T7 246 aa11.48□□□□□ -0.57
UPF3B-202ENST00000345865 A0A087WWL8 130 aa11.47□□□□□ -0.57
UPF3B-202ENST00000345865 LGALS9O00182 355 aa11.47□□□□□ -0.57
UPF3B-202ENST00000345865 SNRPD3P62318 126 aaKnown RBP11.47□□□□□ -0.57
UPF3B-202ENST00000345865 DEFB136Q30KP8 78 aa11.47□□□□□ -0.57
UPF3B-202ENST00000345865 DEFB113Q30KQ7 82 aa11.47□□□□□ -0.57
UPF3B-202ENST00000345865 CSTL1Q9H114 145 aa11.47□□□□□ -0.57
UPF3B-202ENST00000345865 SPINK13Q1W4C9 94 aa11.47□□□□□ -0.57
UPF3B-202ENST00000345865 SCGB3A1Q96QR1 104 aa11.47□□□□□ -0.57
UPF3B-202ENST00000345865 IGHV3-16A0A0C4DH30 117 aa11.46□□□□□ -0.57
UPF3B-202ENST00000345865 C2orf66Q6UXQ4 117 aa11.46□□□□□ -0.57
UPF3B-202ENST00000345865 MAPKAPK5-AS1Q8N8E1 139 aa11.46□□□□□ -0.57
UPF3B-202ENST00000345865 RNF152Q8N8N0 203 aa11.46□□□□□ -0.57
UPF3B-202ENST00000345865 ODF3Q96PU9 254 aa11.46□□□□□ -0.57
UPF3B-202ENST00000345865 K7EP13 123 aa11.46□□□□□ -0.58
UPF3B-202ENST00000345865 SUMO4Q6EEV6 95 aa11.46□□□□□ -0.58
UPF3B-202ENST00000345865 NEXN-AS1Q8NBZ9 246 aa11.46□□□□□ -0.58
UPF3B-202ENST00000345865 TRBV25-1A0A075B6N4 114 aa11.45□□□□□ -0.58
UPF3B-202ENST00000345865 TRAV12-1A0A0B4J245 112 aa11.45□□□□□ -0.58
UPF3B-202ENST00000345865 SLURP1P55000 103 aa11.45□□□□□ -0.58
UPF3B-202ENST00000345865 Q8N1Y9 231 aa11.45□□□□□ -0.58
UPF3B-202ENST00000345865 C9orf85Q96MD7 179 aa11.45□□□□□ -0.58
UPF3B-202ENST00000345865 HIST2H2BDQ6DRA6 164 aa11.44□□□□□ -0.58
UPF3B-202ENST00000345865 KRTAP1-3Q8IUG1 177 aa11.44□□□□□ -0.58
UPF3B-202ENST00000345865 OR4C5Q8NGB2 326 aa11.44□□□□□ -0.58
UPF3B-202ENST00000345865 Q96MF0 132 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms