RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 KIR3DS1Q14943 382 aa9.75□□□□□ -0.85
CLK3-201ENST00000345005 ADAMTSL5Q6ZMM2 481 aa9.75□□□□□ -0.85
CLK3-201ENST00000345005 DAZ1Q9NQZ3 744 aaKnown RBP9.75□□□□□ -0.85
CLK3-201ENST00000345005 IGHV7-4-1A0A0J9YVY3 117 aa9.74□□□□□ -0.85
CLK3-201ENST00000345005 NCR2O95944 276 aa9.74□□□□□ -0.85
CLK3-201ENST00000345005 SMIM13P0DJ93 91 aa9.74□□□□□ -0.85
CLK3-201ENST00000345005 CACNG7P62955 275 aa9.74□□□□□ -0.85
CLK3-201ENST00000345005 CNFNQ9BYD5 112 aa9.74□□□□□ -0.85
CLK3-201ENST00000345005 UFC1Q9Y3C8 167 aa9.74□□□□□ -0.85
CLK3-201ENST00000345005 LOC389332A0A1B0GUA5 103 aa9.73□□□□□ -0.85
CLK3-201ENST00000345005 ATP5LO75964 103 aa9.73□□□□□ -0.85
CLK3-201ENST00000345005 FCER1GP30273 86 aa9.73□□□□□ -0.85
CLK3-201ENST00000345005 CD300EQ496F6 205 aaPredicted RBP9.73□□□□□ -0.85
CLK3-201ENST00000345005 MRPL53Q96EL3 112 aaKnown RBP9.73□□□□□ -0.85
CLK3-201ENST00000345005 PRR25Q96S07 402 aa9.73□□□□□ -0.85
CLK3-201ENST00000345005 MCRIP2Q9BUT9 160 aaKnown RBP9.73□□□□□ -0.85
CLK3-201ENST00000345005 A0A1W2PPM0 123 aa9.72□□□□□ -0.85
CLK3-201ENST00000345005 TWIST1Q15672 202 aa9.72□□□□□ -0.85
CLK3-201ENST00000345005 TM4SF20Q53R12 229 aa9.72□□□□□ -0.85
CLK3-201ENST00000345005 IGFL4Q6B9Z1 124 aa9.72□□□□□ -0.85
CLK3-201ENST00000345005 CFAP161Q6P656 301 aa9.72□□□□□ -0.85
CLK3-201ENST00000345005 FOXI2Q6ZQN5 318 aa9.72□□□□□ -0.85
CLK3-201ENST00000345005 Q6ZSV7 163 aa9.72□□□□□ -0.85
CLK3-201ENST00000345005 C8orf86Q6ZUL3 223 aa9.72□□□□□ -0.85
CLK3-201ENST00000345005 AMN1Q8IY45 258 aa9.72□□□□□ -0.85
CLK3-201ENST00000345005 RBAKDNA6NC62 111 aa9.72□□□□□ -0.85
CLK3-201ENST00000345005 FABP5P3A8MUU1 101 aa9.72□□□□□ -0.85
CLK3-201ENST00000345005 H3BUT2 72 aa9.72□□□□□ -0.85
CLK3-201ENST00000345005 IGLC6P0CF74 106 aa9.72□□□□□ -0.85
CLK3-201ENST00000345005 HLA-DMBP28068 263 aa9.72□□□□□ -0.85
CLK3-201ENST00000345005 ERASQ7Z444 233 aa9.72□□□□□ -0.85
CLK3-201ENST00000345005 RHPN1-AS1Q9BWJ2 59 aa9.72□□□□□ -0.85
CLK3-201ENST00000345005 ZMAT4Q9H898 229 aa9.72□□□□□ -0.85
CLK3-201ENST00000345005 ESM1Q9NQ30 184 aa9.72□□□□□ -0.85
CLK3-201ENST00000345005 TP73-AS1Q9UF72 201 aa9.72□□□□□ -0.85
CLK3-201ENST00000345005 IGKV2-40A0A087WW87 121 aaPredicted RBP9.71□□□□□ -0.85
CLK3-201ENST00000345005 TRAV8-2A0A0B4J237 113 aa9.71□□□□□ -0.85
CLK3-201ENST00000345005 IGKV2D-40P01614 121 aaPredicted RBP9.71□□□□□ -0.85
CLK3-201ENST00000345005 SRD5A1P18405 259 aa9.71□□□□□ -0.85
CLK3-201ENST00000345005 EVI2AP22794 236 aa9.71□□□□□ -0.85
CLK3-201ENST00000345005 TAL2Q16559 108 aa9.71□□□□□ -0.85
CLK3-201ENST00000345005 PRR31Q5SQ13 230 aa9.71□□□□□ -0.85
CLK3-201ENST00000345005 ZNF418Q8TF45 676 aaPredicted RBP9.71□□□□□ -0.85
CLK3-201ENST00000345005 C16orf92Q96LL3 132 aa9.71□□□□□ -0.85
CLK3-201ENST00000345005 C8orf49Q96NF6 230 aa9.71□□□□□ -0.85
CLK3-201ENST00000345005 SPATA25Q9BR10 227 aa9.71□□□□□ -0.85
CLK3-201ENST00000345005 F8P00451 2351 aa9.71□□□□□ -0.86
CLK3-201ENST00000345005 TMEM213A2RRL7 107 aa9.7□□□□□ -0.86
CLK3-201ENST00000345005 LGALS9O00182 355 aa9.7□□□□□ -0.86
CLK3-201ENST00000345005 RNASE1P07998 156 aaKnown RBP9.7□□□□□ -0.86
CLK3-201ENST00000345005 RNF182Q8N6D2 247 aa9.7□□□□□ -0.86
CLK3-201ENST00000345005 ASCL2Q99929 193 aa9.7□□□□□ -0.86
CLK3-201ENST00000345005 SPCS1Q9Y6A9 102 aa9.7□□□□□ -0.86
CLK3-201ENST00000345005 SNAI2O43623 268 aa9.7□□□□□ -0.86
CLK3-201ENST00000345005 AZU1P20160 251 aa9.7□□□□□ -0.86
CLK3-201ENST00000345005 VGLL1Q99990 258 aa9.7□□□□□ -0.86
CLK3-201ENST00000345005 IGHV4OR15-8A0A075B7B6 117 aa9.69□□□□□ -0.86
CLK3-201ENST00000345005 A0A087WW49 117 aa9.69□□□□□ -0.86
CLK3-201ENST00000345005 F8W1H4 67 aa9.69□□□□□ -0.86
CLK3-201ENST00000345005 LY6G6DO95868 133 aa9.69□□□□□ -0.86
CLK3-201ENST00000345005 NMUP48645 174 aa9.69□□□□□ -0.86
CLK3-201ENST00000345005 RPL11P62913 178 aaKnown RBP9.69□□□□□ -0.86
CLK3-201ENST00000345005 SAMD5Q5TGI4 173 aa9.69□□□□□ -0.86
CLK3-201ENST00000345005 NPYP01303 97 aa9.68□□□□□ -0.86
CLK3-201ENST00000345005 IGKCP01834 107 aa9.68□□□□□ -0.86
CLK3-201ENST00000345005 PRB4P10163 310 aaPredicted RBP9.68□□□□□ -0.86
CLK3-201ENST00000345005 WFDC12Q8WWY7 111 aa9.68□□□□□ -0.86
CLK3-201ENST00000345005 SMR3AQ99954 134 aa9.68□□□□□ -0.86
CLK3-201ENST00000345005 HIVEP2P31629 2446 aa9.68□□□□□ -0.86
CLK3-201ENST00000345005 PRAC2D3DTV9 90 aa9.68□□□□□ -0.86
CLK3-201ENST00000345005 DPM2O94777 84 aa9.68□□□□□ -0.86
CLK3-201ENST00000345005 HOXD3P31249 432 aaPredicted RBP9.68□□□□□ -0.86
CLK3-201ENST00000345005 Q8N8P6 123 aa9.68□□□□□ -0.86
CLK3-201ENST00000345005 C4orf3Q8WVX3 66 aa9.68□□□□□ -0.86
CLK3-201ENST00000345005 JMJD8Q96S16 334 aa9.68□□□□□ -0.86
CLK3-201ENST00000345005 C16orf95Q9H693 158 aa9.68□□□□□ -0.86
CLK3-201ENST00000345005 MTORP42345 2549 aa9.67□□□□□ -0.86
CLK3-201ENST00000345005 TMSB15BA0A087X1C1 80 aa9.67□□□□□ -0.86
CLK3-201ENST00000345005 GAGE12HA6NDE8 117 aa9.67□□□□□ -0.86
CLK3-201ENST00000345005 SOCS3O14543 225 aa9.67□□□□□ -0.86
CLK3-201ENST00000345005 PRSS1P07477 247 aa9.67□□□□□ -0.86
CLK3-201ENST00000345005 LEPP41159 167 aa9.67□□□□□ -0.86
CLK3-201ENST00000345005 SYNJ2BPP57105 145 aa9.67□□□□□ -0.86
CLK3-201ENST00000345005 HILS1P60008 231 aa9.67□□□□□ -0.86
CLK3-201ENST00000345005 C9orf47Q6ZRZ4 202 aa9.67□□□□□ -0.86
CLK3-201ENST00000345005 MRAP2Q96G30 205 aa9.67□□□□□ -0.86
CLK3-201ENST00000345005 TM2D2Q9BX73 214 aa9.67□□□□□ -0.86
CLK3-201ENST00000345005 LINC01619G3V211 115 aa9.66□□□□□ -0.86
CLK3-201ENST00000345005 TNFRSF6BO95407 300 aa9.66□□□□□ -0.86
CLK3-201ENST00000345005 ORM1P02763 201 aa9.66□□□□□ -0.86
CLK3-201ENST00000345005 ERCC8Q13216 396 aa9.66□□□□□ -0.86
CLK3-201ENST00000345005 ODF1Q14990 250 aa9.66□□□□□ -0.86
CLK3-201ENST00000345005 TMEM78Q5T7P6 136 aa9.66□□□□□ -0.86
CLK3-201ENST00000345005 Q71RC1 249 aaPredicted RBP9.66□□□□□ -0.86
CLK3-201ENST00000345005 CLUHP3Q96NS8 147 aa9.66□□□□□ -0.86
CLK3-201ENST00000345005 OVOL1O14753 267 aa9.66□□□□□ -0.86
CLK3-201ENST00000345005 ID1P41134 155 aa9.66□□□□□ -0.86
CLK3-201ENST00000345005 KHDC1LQ5JSQ8 128 aa9.66□□□□□ -0.86
CLK3-201ENST00000345005 Q8TAT8 98 aa9.66□□□□□ -0.86
CLK3-201ENST00000345005 RNF185Q96GF1 192 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms