RNA–Protein interactions for RNA: ENST00000343257.6

CLCN1-201, Transcript of chloride voltage-gated channel 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLCN1, Length 3,172 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN1-201ENST00000343257 NTN5Q8WTR8 489 aaPredicted RBP11.33□□□□□ -0.6
CLCN1-201ENST00000343257 PHLDA3Q9Y5J5 127 aa11.33□□□□□ -0.6
CLCN1-201ENST00000343257 COX6B1P14854 86 aa11.32□□□□□ -0.6
CLCN1-201ENST00000343257 ZNF672Q499Z4 452 aaPredicted RBP11.32□□□□□ -0.6
CLCN1-201ENST00000343257 SNCGO76070 127 aa11.32□□□□□ -0.6
CLCN1-201ENST00000343257 TP53TG1Q9Y2A0 90 aa11.32□□□□□ -0.6
CLCN1-201ENST00000343257 TRAV2A0A0B4J234 112 aa11.32□□□□□ -0.6
CLCN1-201ENST00000343257 GNRH2O43555 120 aa11.32□□□□□ -0.6
CLCN1-201ENST00000343257 C16orf92Q96LL3 132 aa11.32□□□□□ -0.6
CLCN1-201ENST00000343257 SLC50A1Q9BRV3 221 aa11.32□□□□□ -0.6
CLCN1-201ENST00000343257 ANKRD11Q6UB99 2663 aaPredicted RBP11.31□□□□□ -0.6
CLCN1-201ENST00000343257 CRYGDP07320 174 aa11.31□□□□□ -0.6
CLCN1-201ENST00000343257 TTC32Q5I0X7 151 aa11.31□□□□□ -0.6
CLCN1-201ENST00000343257 LYRM7Q5U5X0 104 aa11.31□□□□□ -0.6
CLCN1-201ENST00000343257 SHISA2Q6UWI4 295 aa11.31□□□□□ -0.6
CLCN1-201ENST00000343257 RNF5Q99942 180 aa11.31□□□□□ -0.6
CLCN1-201ENST00000343257 C10orf126Q8N4M7 172 aa11.31□□□□□ -0.6
CLCN1-201ENST00000343257 BDP1A6H8Y1 2624 aa11.31□□□□□ -0.6
CLCN1-201ENST00000343257 LINC01619G3V211 115 aa11.3□□□□□ -0.6
CLCN1-201ENST00000343257 ELANEP08246 267 aa11.3□□□□□ -0.6
CLCN1-201ENST00000343257 HERV-K104P63124 156 aa11.3□□□□□ -0.6
CLCN1-201ENST00000343257 JPT2Q9H910 190 aa11.3□□□□□ -0.6
CLCN1-201ENST00000343257 PRO1854Q9UHT4 67 aa11.3□□□□□ -0.6
CLCN1-201ENST00000343257 CUL9Q8IWT3 2517 aa11.3□□□□□ -0.6
CLCN1-201ENST00000343257 G3V318 75 aa11.3□□□□□ -0.6
CLCN1-201ENST00000343257 TMEM190Q8WZ59 177 aa11.3□□□□□ -0.6
CLCN1-201ENST00000343257 OPRPNQ99935 248 aaPredicted RBP11.3□□□□□ -0.6
CLCN1-201ENST00000343257 LINC00527Q9UJ94 153 aa11.3□□□□□ -0.6
CLCN1-201ENST00000343257 A4D1N5 150 aa11.3□□□□□ -0.6
CLCN1-201ENST00000343257 IGHV3-30P01768 117 aa11.3□□□□□ -0.6
CLCN1-201ENST00000343257 IGHV3-30-5P0DP03 117 aa11.3□□□□□ -0.6
CLCN1-201ENST00000343257 TCF15Q12870 199 aa11.29□□□□□ -0.6
CLCN1-201ENST00000343257 FAM57AQ8TBR7 257 aa11.29□□□□□ -0.6
CLCN1-201ENST00000343257 SPTA1P02549 2419 aa11.29□□□□□ -0.6
CLCN1-201ENST00000343257 TEX49A0A1B0GTD5 131 aa11.29□□□□□ -0.6
CLCN1-201ENST00000343257 F5H697 171 aa11.29□□□□□ -0.6
CLCN1-201ENST00000343257 F6UB75 175 aa11.29□□□□□ -0.6
CLCN1-201ENST00000343257 TSHBP01222 138 aa11.29□□□□□ -0.6
CLCN1-201ENST00000343257 HERVK_113P61574 105 aa11.29□□□□□ -0.6
CLCN1-201ENST00000343257 SCGB2A1O75556 95 aa11.28□□□□□ -0.6
CLCN1-201ENST00000343257 RNASE4P34096 147 aaKnown RBP11.28□□□□□ -0.6
CLCN1-201ENST00000343257 NDUFV3P56181 108 aaKnown RBP11.28□□□□□ -0.6
CLCN1-201ENST00000343257 RPL11P62913 178 aaKnown RBP11.28□□□□□ -0.6
CLCN1-201ENST00000343257 Q6ZS92 163 aa11.28□□□□□ -0.6
CLCN1-201ENST00000343257 NPBQ8NG41 125 aa11.28□□□□□ -0.6
CLCN1-201ENST00000343257 LINC01560Q8TB33 94 aa11.28□□□□□ -0.6
CLCN1-201ENST00000343257 IGLV4-69A0A075B6H9 119 aa11.28□□□□□ -0.6
CLCN1-201ENST00000343257 C20orf173Q96LM9 149 aa11.28□□□□□ -0.6
CLCN1-201ENST00000343257 DPH3P1Q9H4G8 78 aa11.28□□□□□ -0.6
CLCN1-201ENST00000343257 ZFAND3Q9H8U3 227 aa11.28□□□□□ -0.6
CLCN1-201ENST00000343257 A0A087WWL8 130 aa11.28□□□□□ -0.6
CLCN1-201ENST00000343257 IGHV7-81A0A0B4J1V7 117 aa11.28□□□□□ -0.6
CLCN1-201ENST00000343257 ADARB2-AS1A8MUL3 147 aa11.28□□□□□ -0.6
CLCN1-201ENST00000343257 AKAP13Q12802 2813 aa11.27□□□□□ -0.6
CLCN1-201ENST00000343257 CLPSL1A2RUU4 121 aa11.27□□□□□ -0.6
CLCN1-201ENST00000343257 TMEM262E9PQX1 116 aa11.27□□□□□ -0.6
CLCN1-201ENST00000343257 CITED1Q99966 193 aa11.27□□□□□ -0.6
CLCN1-201ENST00000343257 RNF223E7ERA6 249 aa11.27□□□□□ -0.61
CLCN1-201ENST00000343257 Q8N1Y9 231 aa11.27□□□□□ -0.61
CLCN1-201ENST00000343257 EIF4EBP3O60516 100 aaPredicted RBP11.26□□□□□ -0.61
CLCN1-201ENST00000343257 LGALS3P17931 250 aaKnown RBP11.26□□□□□ -0.61
CLCN1-201ENST00000343257 FAM159AQ6UWV7 190 aa11.26□□□□□ -0.61
CLCN1-201ENST00000343257 ZNRF2Q8NHG8 242 aa11.26□□□□□ -0.61
CLCN1-201ENST00000343257 TIMD4Q96H15 378 aa11.26□□□□□ -0.61
CLCN1-201ENST00000343257 ZNF256Q9Y2P7 627 aaPredicted RBP11.26□□□□□ -0.61
CLCN1-201ENST00000343257 GAGE12JA6NER3 117 aa11.26□□□□□ -0.61
CLCN1-201ENST00000343257 GAGE7O76087 117 aa11.26□□□□□ -0.61
CLCN1-201ENST00000343257 GAGE12FP0CL80 117 aa11.26□□□□□ -0.61
CLCN1-201ENST00000343257 GAGE12GP0CL81 117 aa11.26□□□□□ -0.61
CLCN1-201ENST00000343257 GAGE12IP0CL82 117 aa11.26□□□□□ -0.61
CLCN1-201ENST00000343257 NPC2P61916 151 aa11.26□□□□□ -0.61
CLCN1-201ENST00000343257 GAGE4Q13068 117 aa11.26□□□□□ -0.61
CLCN1-201ENST00000343257 PTPRZ1P23471 2315 aaPredicted RBP11.26□□□□□ -0.61
CLCN1-201ENST00000343257 ZFHX3Q15911 3703 aa11.26□□□□□ -0.61
CLCN1-201ENST00000343257 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.26□□□□□ -0.61
CLCN1-201ENST00000343257 PLA2G2CQ5R387 149 aa11.26□□□□□ -0.61
CLCN1-201ENST00000343257 TRBV7-9A0A0J9YWB2 115 aa11.25□□□□□ -0.61
CLCN1-201ENST00000343257 RBAKDNA6NC62 111 aa11.25□□□□□ -0.61
CLCN1-201ENST00000343257 ASIPP42127 132 aa11.25□□□□□ -0.61
CLCN1-201ENST00000343257 ZNF580Q9UK33 172 aa11.25□□□□□ -0.61
CLCN1-201ENST00000343257 RIF1Q5UIP0 2472 aaKnown RBP11.25□□□□□ -0.61
CLCN1-201ENST00000343257 RHODO00212 210 aa11.25□□□□□ -0.61
CLCN1-201ENST00000343257 ATP6V0E1O15342 81 aa11.25□□□□□ -0.61
CLCN1-201ENST00000343257 FAM74A4Q5TZK3 123 aa11.25□□□□□ -0.61
CLCN1-201ENST00000343257 MUSTN1Q8IVN3 82 aa11.25□□□□□ -0.61
CLCN1-201ENST00000343257 C15orf53Q8NAA6 179 aa11.25□□□□□ -0.61
CLCN1-201ENST00000343257 METTL26Q96S19 204 aa11.25□□□□□ -0.61
CLCN1-201ENST00000343257 J3QQQ9 107 aa11.24□□□□□ -0.61
CLCN1-201ENST00000343257 IFITM1P13164 125 aa11.24□□□□□ -0.61
CLCN1-201ENST00000343257 SLC25A29Q8N8R3 303 aa11.24□□□□□ -0.61
CLCN1-201ENST00000343257 CCDC140Q96MF4 163 aa11.24□□□□□ -0.61
CLCN1-201ENST00000343257 ANKHD1Q8IWZ3 2542 aaKnown RBP11.24□□□□□ -0.61
CLCN1-201ENST00000343257 PMVKQ15126 192 aa11.24□□□□□ -0.61
CLCN1-201ENST00000343257 VMO1Q7Z5L0 202 aa11.24□□□□□ -0.61
CLCN1-201ENST00000343257 SBSPONQ8IVN8 264 aa11.24□□□□□ -0.61
CLCN1-201ENST00000343257 VCX2Q9H322 139 aa11.24□□□□□ -0.61
CLCN1-201ENST00000343257 SRD5A1P18405 259 aa11.23□□□□□ -0.61
CLCN1-201ENST00000343257 IGHV4-4A0A075B6R2 117 aa11.23□□□□□ -0.61
CLCN1-201ENST00000343257 TRAV8-4A0A0B4J246 113 aa11.23□□□□□ -0.61
CLCN1-201ENST00000343257 PRSS2P07478 247 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 167.3 ms