RNA–Protein interactions for RNA: ENST00000343139.9

HLA-DQA1-201, Transcript of major histocompatibility complex, class II, DQ alpha 1, humanhuman

APPRIS P1 BASIC

Gene HLA-DQA1, Length 1,591 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1-201ENST00000343139 CRIP1P50238 77 aa9.16□□□□□ -0.94
HLA-DQA1-201ENST00000343139 RNF212Q495C1 297 aa9.16□□□□□ -0.94
HLA-DQA1-201ENST00000343139 PIK3CD-AS1Q5SR53 167 aa9.16□□□□□ -0.94
HLA-DQA1-201ENST00000343139 DNLZQ5SXM8 178 aa9.16□□□□□ -0.94
HLA-DQA1-201ENST00000343139 SMIM12Q96EX1 92 aa9.16□□□□□ -0.94
HLA-DQA1-201ENST00000343139 C9orf85Q96MD7 179 aa9.16□□□□□ -0.94
HLA-DQA1-201ENST00000343139 SMCO4Q9NRQ5 59 aa9.16□□□□□ -0.94
HLA-DQA1-201ENST00000343139 MRPL16Q9NX20 251 aaKnown RBP9.16□□□□□ -0.94
HLA-DQA1-201ENST00000343139 KMT2AQ03164 3969 aa9.16□□□□□ -0.94
HLA-DQA1-201ENST00000343139 IGKV3D-20A0A0C4DH25 116 aa9.16□□□□□ -0.94
HLA-DQA1-201ENST00000343139 CIDEAO60543 219 aa9.16□□□□□ -0.94
HLA-DQA1-201ENST00000343139 FAM3BP58499 235 aaPredicted RBP9.16□□□□□ -0.94
HLA-DQA1-201ENST00000343139 BAGE2Q86Y30 109 aa9.16□□□□□ -0.94
HLA-DQA1-201ENST00000343139 RNASE3P12724 160 aaKnown RBP9.15□□□□□ -0.95
HLA-DQA1-201ENST00000343139 RPL35P42766 123 aaKnown RBP9.15□□□□□ -0.95
HLA-DQA1-201ENST00000343139 PNRC1Q12796 327 aaPredicted RBP9.15□□□□□ -0.95
HLA-DQA1-201ENST00000343139 OR5I1Q13606 314 aa9.15□□□□□ -0.95
HLA-DQA1-201ENST00000343139 LINC01559Q495D7 138 aa9.15□□□□□ -0.95
HLA-DQA1-201ENST00000343139 POM121L12Q8N7R1 296 aa9.15□□□□□ -0.95
HLA-DQA1-201ENST00000343139 TRAV26-1A0A087WT03 109 aa9.14□□□□□ -0.95
HLA-DQA1-201ENST00000343139 TRAV4A0A0B4J268 109 aa9.14□□□□□ -0.95
HLA-DQA1-201ENST00000343139 TMEM250H0YL14 139 aa9.14□□□□□ -0.95
HLA-DQA1-201ENST00000343139 SH2D1AO60880 128 aa9.14□□□□□ -0.95
HLA-DQA1-201ENST00000343139 C15orf54Q8N8G6 183 aa9.14□□□□□ -0.95
HLA-DQA1-201ENST00000343139 IL36BQ9NZH7 164 aa9.14□□□□□ -0.95
HLA-DQA1-201ENST00000343139 A0A087WWC5 75 aa9.13□□□□□ -0.95
HLA-DQA1-201ENST00000343139 C7orf77A4D0Y5 90 aa9.13□□□□□ -0.95
HLA-DQA1-201ENST00000343139 B4DEV8 164 aa9.13□□□□□ -0.95
HLA-DQA1-201ENST00000343139 M0R036 132 aa9.13□□□□□ -0.95
HLA-DQA1-201ENST00000343139 ORM1P02763 201 aa9.13□□□□□ -0.95
HLA-DQA1-201ENST00000343139 ASIPP42127 132 aa9.13□□□□□ -0.95
HLA-DQA1-201ENST00000343139 CBLN2Q8IUK8 224 aa9.13□□□□□ -0.95
HLA-DQA1-201ENST00000343139 PRO0255Q9UI72 69 aa9.13□□□□□ -0.95
HLA-DQA1-201ENST00000343139 DNAH6Q9C0G6 4158 aa9.13□□□□□ -0.95
HLA-DQA1-201ENST00000343139 CXCL1P09341 107 aa9.12□□□□□ -0.95
HLA-DQA1-201ENST00000343139 FHL2Q14192 279 aa9.12□□□□□ -0.95
HLA-DQA1-201ENST00000343139 ZNF876PQ49A33 203 aa9.12□□□□□ -0.95
HLA-DQA1-201ENST00000343139 VSIG2Q96IQ7 327 aa9.12□□□□□ -0.95
HLA-DQA1-201ENST00000343139 RPS10P5Q9NQ39 176 aa9.12□□□□□ -0.95
HLA-DQA1-201ENST00000343139 S100A4P26447 101 aaKnown RBP9.12□□□□□ -0.95
HLA-DQA1-201ENST00000343139 ZNF575Q86XF7 245 aa9.12□□□□□ -0.95
HLA-DQA1-201ENST00000343139 DERL1Q9BUN8 251 aa9.12□□□□□ -0.95
HLA-DQA1-201ENST00000343139 HHLA3Q9XRX5 114 aa9.12□□□□□ -0.95
HLA-DQA1-201ENST00000343139 NUDT3O95989 172 aa9.11□□□□□ -0.95
HLA-DQA1-201ENST00000343139 MED14OSP0DP75 135 aa9.11□□□□□ -0.95
HLA-DQA1-201ENST00000343139 CRYBA4P53673 196 aa9.11□□□□□ -0.95
HLA-DQA1-201ENST00000343139 OR4C5Q8NGB2 326 aa9.11□□□□□ -0.95
HLA-DQA1-201ENST00000343139 ZNF479Q96JC4 524 aa9.11□□□□□ -0.95
HLA-DQA1-201ENST00000343139 SCRT2Q9NQ03 307 aa9.11□□□□□ -0.95
HLA-DQA1-201ENST00000343139 RS1O15537 224 aa9.1□□□□□ -0.95
HLA-DQA1-201ENST00000343139 PAX4O43316 350 aa9.1□□□□□ -0.95
HLA-DQA1-201ENST00000343139 GNG4P50150 75 aa9.1□□□□□ -0.95
HLA-DQA1-201ENST00000343139 CCL18P55774 89 aa9.1□□□□□ -0.95
HLA-DQA1-201ENST00000343139 CENPWQ5EE01 88 aa9.1□□□□□ -0.95
HLA-DQA1-201ENST00000343139 UBE2DNLQ8IWF7 75 aa9.1□□□□□ -0.95
HLA-DQA1-201ENST00000343139 NHLRC2Q8NBF2 726 aa9.1□□□□□ -0.95
HLA-DQA1-201ENST00000343139 BIN3Q9NQY0 253 aa9.1□□□□□ -0.95
HLA-DQA1-201ENST00000343139 TRGV4A0A0C4DH28 118 aa9.09□□□□□ -0.95
HLA-DQA1-201ENST00000343139 A0A0J9YY99 117 aa9.09□□□□□ -0.95
HLA-DQA1-201ENST00000343139 LOC105371267A0A1B0GV96 52 aa9.09□□□□□ -0.95
HLA-DQA1-201ENST00000343139 PGPEP1LA6NFU8 196 aa9.09□□□□□ -0.95
HLA-DQA1-201ENST00000343139 IGLV2-8P01709 118 aa9.09□□□□□ -0.95
HLA-DQA1-201ENST00000343139 IGHV3-53P01767 116 aa9.09□□□□□ -0.95
HLA-DQA1-201ENST00000343139 MT-ND4LP03901 98 aa9.09□□□□□ -0.95
HLA-DQA1-201ENST00000343139 CFAP126Q5VTH2 177 aa9.09□□□□□ -0.95
HLA-DQA1-201ENST00000343139 MUC4Q99102 2169 aa9.09□□□□□ -0.95
HLA-DQA1-201ENST00000343139 A0A096LPF7 62 aa9.08□□□□□ -0.96
HLA-DQA1-201ENST00000343139 A8MWV9 139 aa9.08□□□□□ -0.96
HLA-DQA1-201ENST00000343139 C9JCJ5 164 aa9.08□□□□□ -0.96
HLA-DQA1-201ENST00000343139 ARMS2P0C7Q2 107 aa9.08□□□□□ -0.96
HLA-DQA1-201ENST00000343139 ZFP2Q6ZN57 461 aa9.08□□□□□ -0.96
HLA-DQA1-201ENST00000343139 SYT8Q8NBV8 401 aa9.08□□□□□ -0.96
HLA-DQA1-201ENST00000343139 TMEM242Q9NWH2 141 aa9.08□□□□□ -0.96
HLA-DQA1-201ENST00000343139 NAT8Q9UHE5 227 aa9.08□□□□□ -0.96
HLA-DQA1-201ENST00000343139 ICOSQ9Y6W8 199 aa9.08□□□□□ -0.96
HLA-DQA1-201ENST00000343139 TRBV20OR9-2A0A075B6H5 130 aa9.07□□□□□ -0.96
HLA-DQA1-201ENST00000343139 COLCA2A8K830 154 aa9.07□□□□□ -0.96
HLA-DQA1-201ENST00000343139 H3BVH4 76 aa9.07□□□□□ -0.96
HLA-DQA1-201ENST00000343139 GATA1P15976 413 aaPredicted RBP9.07□□□□□ -0.96
HLA-DQA1-201ENST00000343139 CEBPGP53567 150 aa9.07□□□□□ -0.96
HLA-DQA1-201ENST00000343139 MRPL23Q16540 153 aaKnown RBP9.07□□□□□ -0.96
HLA-DQA1-201ENST00000343139 UPK3BQ9BT76 320 aa9.07□□□□□ -0.96
HLA-DQA1-201ENST00000343139 SSBP4Q9BWG4 385 aaPredicted RBP9.07□□□□□ -0.96
HLA-DQA1-201ENST00000343139 CTDSP1Q9GZU7 261 aa9.07□□□□□ -0.96
HLA-DQA1-201ENST00000343139 TRBV6-4A0A1B0GX49 114 aa9.07□□□□□ -0.96
HLA-DQA1-201ENST00000343139 C19orf71A6NCJ1 209 aa9.07□□□□□ -0.96
HLA-DQA1-201ENST00000343139 ZNF727A8MUV8 499 aa9.07□□□□□ -0.96
HLA-DQA1-201ENST00000343139 SMIM7Q9BQ49 75 aa9.07□□□□□ -0.96
HLA-DQA1-201ENST00000343139 PHLDA3Q9Y5J5 127 aa9.07□□□□□ -0.96
HLA-DQA1-201ENST00000343139 GRIFINA4D1Z8 144 aa9.06□□□□□ -0.96
HLA-DQA1-201ENST00000343139 SNAI2O43623 268 aa9.06□□□□□ -0.96
HLA-DQA1-201ENST00000343139 NXPH4O95158 308 aa9.06□□□□□ -0.96
HLA-DQA1-201ENST00000343139 MGST1P10620 155 aaKnown RBP9.06□□□□□ -0.96
HLA-DQA1-201ENST00000343139 PRR27Q6MZM9 219 aa9.06□□□□□ -0.96
HLA-DQA1-201ENST00000343139 SH2D6Q7Z4S9 175 aa9.06□□□□□ -0.96
HLA-DQA1-201ENST00000343139 ZFP82Q8N141 532 aa9.06□□□□□ -0.96
HLA-DQA1-201ENST00000343139 ZNRF2Q8NHG8 242 aa9.06□□□□□ -0.96
HLA-DQA1-201ENST00000343139 DAZAP1Q96EP5 407 aaKnown RBP9.06□□□□□ -0.96
HLA-DQA1-201ENST00000343139 PARLQ9H300 379 aa9.06□□□□□ -0.96
HLA-DQA1-201ENST00000343139 LINC00588Q9Y4M8 146 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms