RNA–Protein interactions for RNA: ENST00000305481.10

USP47-201, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 3,577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-201ENST00000305481 OR1N2Q8NGR9 330 aa4.88□□□□□ -1.63
USP47-201ENST00000305481 DLX4Q92988 240 aaPredicted RBP4.88□□□□□ -1.63
USP47-201ENST00000305481 SMR3AQ99954 134 aa4.88□□□□□ -1.63
USP47-201ENST00000305481 SCRT2Q9NQ03 307 aa4.88□□□□□ -1.63
USP47-201ENST00000305481 AGRNO00468 2067 aa4.88□□□□□ -1.63
USP47-201ENST00000305481 CCL25O15444 150 aa4.88□□□□□ -1.63
USP47-201ENST00000305481 LEPROTL1O95214 131 aa4.88□□□□□ -1.63
USP47-201ENST00000305481 RNASE3P12724 160 aaKnown RBP4.88□□□□□ -1.63
USP47-201ENST00000305481 SNRPD3P62318 126 aaKnown RBP4.88□□□□□ -1.63
USP47-201ENST00000305481 C20orf144Q9BQM9 153 aa4.88□□□□□ -1.63
USP47-201ENST00000305481 VAMP8Q9BV40 100 aa4.88□□□□□ -1.63
USP47-201ENST00000305481 KHDC1LQ5JSQ8 128 aa4.87□□□□□ -1.63
USP47-201ENST00000305481 SPANXN1Q5VSR9 72 aa4.87□□□□□ -1.63
USP47-201ENST00000305481 KLHL30-AS1Q8NEE0 82 aa4.87□□□□□ -1.63
USP47-201ENST00000305481 OR9G4Q8NGQ1 327 aa4.87□□□□□ -1.63
USP47-201ENST00000305481 TIMM8BQ9Y5J9 83 aaPredicted RBP4.87□□□□□ -1.63
USP47-201ENST00000305481 TRAV26-2A0A0B4J265 109 aa4.87□□□□□ -1.63
USP47-201ENST00000305481 SYS1-DBNDD2H3BUS1 97 aa4.87□□□□□ -1.63
USP47-201ENST00000305481 IGKV3-20P01619 116 aa4.87□□□□□ -1.63
USP47-201ENST00000305481 FXYD7P58549 80 aa4.87□□□□□ -1.63
USP47-201ENST00000305481 FA2HQ7L5A8 372 aa4.87□□□□□ -1.63
USP47-201ENST00000305481 C11orf44Q8N8P7 122 aa4.87□□□□□ -1.63
USP47-201ENST00000305481 TMEM70Q9BUB7 260 aa4.87□□□□□ -1.63
USP47-201ENST00000305481 NOTCH2Q04721 2471 aa4.87□□□□□ -1.63
USP47-201ENST00000305481 TRAV12-3A0A0B4J271 114 aa4.86□□□□□ -1.63
USP47-201ENST00000305481 TNFRSF6BO95407 300 aa4.86□□□□□ -1.63
USP47-201ENST00000305481 PPBPP02775 128 aa4.86□□□□□ -1.63
USP47-201ENST00000305481 CACNG7P62955 275 aa4.86□□□□□ -1.63
USP47-201ENST00000305481 MUC4Q99102 2169 aa4.86□□□□□ -1.63
USP47-201ENST00000305481 TRAV12-2A0A075B6T6 113 aa4.86□□□□□ -1.63
USP47-201ENST00000305481 CD28P10747 220 aa4.86□□□□□ -1.63
USP47-201ENST00000305481 ASIPP42127 132 aa4.86□□□□□ -1.63
USP47-201ENST00000305481 AMTNQ6UX39 209 aa4.86□□□□□ -1.63
USP47-201ENST00000305481 Q6ZVH6 145 aa4.86□□□□□ -1.63
USP47-201ENST00000305481 TMEM61Q8N0U2 210 aa4.86□□□□□ -1.63
USP47-201ENST00000305481 NRACQ8N912 160 aa4.86□□□□□ -1.63
USP47-201ENST00000305481 DPF1Q92782 380 aa4.86□□□□□ -1.63
USP47-201ENST00000305481 RAX2Q96IS3 184 aa4.86□□□□□ -1.63
USP47-201ENST00000305481 ODF3Q96PU9 254 aa4.86□□□□□ -1.63
USP47-201ENST00000305481 MCRIP2Q9BUT9 160 aaKnown RBP4.86□□□□□ -1.63
USP47-201ENST00000305481 ZNF747Q9BV97 191 aa4.86□□□□□ -1.63
USP47-201ENST00000305481 LINC01546A6NGU7 62 aa4.86□□□□□ -1.63
USP47-201ENST00000305481 M0R381 172 aa4.86□□□□□ -1.63
USP47-201ENST00000305481 RNASE1P07998 156 aaKnown RBP4.86□□□□□ -1.63
USP47-201ENST00000305481 IGLV2-18A0A075B6J9 118 aa4.85□□□□□ -1.63
USP47-201ENST00000305481 C7orf71A4D174 169 aa4.85□□□□□ -1.63
USP47-201ENST00000305481 MED14OSP0DP75 135 aa4.85□□□□□ -1.63
USP47-201ENST00000305481 SPATA45Q537H7 98 aa4.85□□□□□ -1.63
USP47-201ENST00000305481 LINC01006Q8NI28 216 aa4.85□□□□□ -1.63
USP47-201ENST00000305481 VPS25Q9BRG1 176 aa4.85□□□□□ -1.63
USP47-201ENST00000305481 LAMTOR2Q9Y2Q5 125 aa4.85□□□□□ -1.63
USP47-201ENST00000305481 A0A1W2PRX2 142 aa4.85□□□□□ -1.63
USP47-201ENST00000305481 S100A4P26447 101 aaKnown RBP4.85□□□□□ -1.63
USP47-201ENST00000305481 FHL3Q13643 280 aa4.85□□□□□ -1.63
USP47-201ENST00000305481 SPINK13Q1W4C9 94 aa4.85□□□□□ -1.63
USP47-201ENST00000305481 FOXI2Q6ZQN5 318 aa4.85□□□□□ -1.63
USP47-201ENST00000305481 MIEN1Q9BRT3 115 aa4.85□□□□□ -1.63
USP47-201ENST00000305481 C16orf95Q9H693 158 aa4.85□□□□□ -1.63
USP47-201ENST00000305481 PEMTQ9UBM1 199 aa4.85□□□□□ -1.63
USP47-201ENST00000305481 PHLDA3Q9Y5J5 127 aa4.85□□□□□ -1.63
USP47-201ENST00000305481 KNCNA6PVL3 124 aa4.85□□□□□ -1.63
USP47-201ENST00000305481 LEPP41159 167 aa4.85□□□□□ -1.63
USP47-201ENST00000305481 DEFB114Q30KQ6 69 aa4.85□□□□□ -1.63
USP47-201ENST00000305481 SMIM15Q7Z3B0 74 aa4.85□□□□□ -1.63
USP47-201ENST00000305481 OR2K2Q8NGT1 345 aa4.85□□□□□ -1.63
USP47-201ENST00000305481 CITED2Q99967 270 aaPredicted RBP4.85□□□□□ -1.63
USP47-201ENST00000305481 MAP1LC3CQ9BXW4 147 aa4.85□□□□□ -1.63
USP47-201ENST00000305481 MAP1LC3AQ9H492 121 aa4.85□□□□□ -1.63
USP47-201ENST00000305481 HSPB8Q9UJY1 196 aa4.85□□□□□ -1.63
USP47-201ENST00000305481 SETXQ7Z333 2677 aaKnown RBP4.85□□□□□ -1.63
USP47-201ENST00000305481 NXPH4O95158 308 aa4.84□□□□□ -1.63
USP47-201ENST00000305481 RIPPLY3P57055 190 aa4.84□□□□□ -1.63
USP47-201ENST00000305481 FAM159AQ6UWV7 190 aa4.84□□□□□ -1.63
USP47-201ENST00000305481 C14orf178Q8N769 122 aaPredicted RBP4.84□□□□□ -1.63
USP47-201ENST00000305481 TRAV9-2A0A087WT02 112 aa4.84□□□□□ -1.63
USP47-201ENST00000305481 OR4C46A6NHA9 309 aa4.84□□□□□ -1.63
USP47-201ENST00000305481 RBMY1A1P0DJD3 496 aaKnown RBP4.84□□□□□ -1.63
USP47-201ENST00000305481 RBMY1CP0DJD4 496 aa4.84□□□□□ -1.63
USP47-201ENST00000305481 IGLL1P15814 213 aa4.84□□□□□ -1.63
USP47-201ENST00000305481 DEFB131AP59861 70 aa4.84□□□□□ -1.63
USP47-201ENST00000305481 RBMY1FQ15415 496 aaKnown RBP4.84□□□□□ -1.63
USP47-201ENST00000305481 CD300EQ496F6 205 aaPredicted RBP4.84□□□□□ -1.63
USP47-201ENST00000305481 DEFB125Q8N687 156 aa4.84□□□□□ -1.63
USP47-201ENST00000305481 PMCHL2Q9BQD1 86 aa4.84□□□□□ -1.63
USP47-201ENST00000305481 RBMY1BA6NDE4 496 aaKnown RBP4.84□□□□□ -1.64
USP47-201ENST00000305481 RBMY1EA6NEQ0 496 aaKnown RBP4.84□□□□□ -1.64
USP47-201ENST00000305481 H0Y8G0 127 aa4.84□□□□□ -1.64
USP47-201ENST00000305481 M0R143 59 aa4.84□□□□□ -1.64
USP47-201ENST00000305481 CD7P09564 240 aa4.84□□□□□ -1.64
USP47-201ENST00000305481 RBMY1DP0C7P1 496 aaKnown RBP4.84□□□□□ -1.64
USP47-201ENST00000305481 IGLC3P0DOY3 106 aa4.84□□□□□ -1.64
USP47-201ENST00000305481 LINC00315P59091 139 aa4.84□□□□□ -1.64
USP47-201ENST00000305481 HILS1P60008 231 aa4.84□□□□□ -1.64
USP47-201ENST00000305481 LINC01545Q5VT33 79 aa4.84□□□□□ -1.64
USP47-201ENST00000305481 PET117Q6UWS5 81 aa4.84□□□□□ -1.64
USP47-201ENST00000305481 JPT2Q9H910 190 aa4.84□□□□□ -1.64
USP47-201ENST00000305481 TMEM160Q9NX00 188 aa4.84□□□□□ -1.64
USP47-201ENST00000305481 MDFICQ9P1T7 246 aa4.84□□□□□ -1.64
USP47-201ENST00000305481 KIF25-AS1Q9Y6Z4 181 aa4.84□□□□□ -1.64
USP47-201ENST00000305481 HIVEP2P31629 2446 aa4.84□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms