RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 PSMG4Q5JS54 123 aa11.47□□□□□ -0.57
SF3B4-201ENST00000271628 BVES-AS1Q5T3Y7 98 aa11.47□□□□□ -0.57
SF3B4-201ENST00000271628 LGALS9CQ6DKI2 356 aa11.47□□□□□ -0.57
SF3B4-201ENST00000271628 ODF3Q96PU9 254 aa11.47□□□□□ -0.57
SF3B4-201ENST00000271628 JMJD8Q96S16 334 aa11.47□□□□□ -0.57
SF3B4-201ENST00000271628 FASNP49327 2511 aaKnown RBP11.47□□□□□ -0.57
SF3B4-201ENST00000271628 CCL25O15444 150 aa11.47□□□□□ -0.57
SF3B4-201ENST00000271628 HBDP02042 147 aa11.47□□□□□ -0.57
SF3B4-201ENST00000271628 PPBPP02775 128 aa11.47□□□□□ -0.57
SF3B4-201ENST00000271628 LINC01006Q8NI28 216 aa11.47□□□□□ -0.57
SF3B4-201ENST00000271628 CUBNO60494 3623 aa11.47□□□□□ -0.57
SF3B4-201ENST00000271628 TRAV2A0A0B4J234 112 aa11.46□□□□□ -0.57
SF3B4-201ENST00000271628 MUC21A0A0G2JKD1 596 aa11.46□□□□□ -0.57
SF3B4-201ENST00000271628 MUC21A0A140T8X8 626 aa11.46□□□□□ -0.57
SF3B4-201ENST00000271628 J3KRW8 73 aa11.46□□□□□ -0.57
SF3B4-201ENST00000271628 MUC21Q5SSG8 566 aa11.46□□□□□ -0.57
SF3B4-201ENST00000271628 ADAMTSL5Q6ZMM2 481 aa11.46□□□□□ -0.57
SF3B4-201ENST00000271628 DEFB125Q8N687 156 aa11.46□□□□□ -0.57
SF3B4-201ENST00000271628 DLX4Q92988 240 aaPredicted RBP11.46□□□□□ -0.57
SF3B4-201ENST00000271628 ACANP16112 2415 aa11.46□□□□□ -0.58
SF3B4-201ENST00000271628 NF1P21359 2839 aa11.46□□□□□ -0.58
SF3B4-201ENST00000271628 A0A0J9YX75 114 aa11.45□□□□□ -0.58
SF3B4-201ENST00000271628 KLLNB2CW77 178 aa11.45□□□□□ -0.58
SF3B4-201ENST00000271628 SNAI2O43623 268 aa11.45□□□□□ -0.58
SF3B4-201ENST00000271628 RNASE4P34096 147 aaKnown RBP11.45□□□□□ -0.58
SF3B4-201ENST00000271628 CACNG7P62955 275 aa11.45□□□□□ -0.58
SF3B4-201ENST00000271628 DUSP14O95147 198 aaKnown RBP11.45□□□□□ -0.58
SF3B4-201ENST00000271628 NCR2O95944 276 aa11.45□□□□□ -0.58
SF3B4-201ENST00000271628 SMIM15Q7Z3B0 74 aa11.45□□□□□ -0.58
SF3B4-201ENST00000271628 TSSC4Q9Y5U2 329 aaPredicted RBP11.45□□□□□ -0.58
SF3B4-201ENST00000271628 HECTD1Q9ULT8 2610 aa11.45□□□□□ -0.58
SF3B4-201ENST00000271628 IGHV4-4A0A075B6R2 117 aa11.44□□□□□ -0.58
SF3B4-201ENST00000271628 LEPP41159 167 aa11.44□□□□□ -0.58
SF3B4-201ENST00000271628 Q6ZQT7 251 aa11.44□□□□□ -0.58
SF3B4-201ENST00000271628 Q6ZVH6 145 aa11.44□□□□□ -0.58
SF3B4-201ENST00000271628 DUX3Q96PT4 197 aa11.44□□□□□ -0.58
SF3B4-201ENST00000271628 SMR3AQ99954 134 aa11.44□□□□□ -0.58
SF3B4-201ENST00000271628 TP73-AS1Q9UF72 201 aa11.44□□□□□ -0.58
SF3B4-201ENST00000271628 NPYP01303 97 aa11.44□□□□□ -0.58
SF3B4-201ENST00000271628 MSRB1Q9NZV6 116 aa11.44□□□□□ -0.58
SF3B4-201ENST00000271628 LY6G6DO95868 133 aa11.43□□□□□ -0.58
SF3B4-201ENST00000271628 MED14OSP0DP75 135 aa11.43□□□□□ -0.58
SF3B4-201ENST00000271628 CD28P10747 220 aa11.43□□□□□ -0.58
SF3B4-201ENST00000271628 S100A4P26447 101 aaKnown RBP11.43□□□□□ -0.58
SF3B4-201ENST00000271628 ASIPP42127 132 aa11.43□□□□□ -0.58
SF3B4-201ENST00000271628 SPANXN1Q5VSR9 72 aa11.43□□□□□ -0.58
SF3B4-201ENST00000271628 FOXI2Q6ZQN5 318 aa11.43□□□□□ -0.58
SF3B4-201ENST00000271628 LINC01546A6NGU7 62 aa11.42□□□□□ -0.58
SF3B4-201ENST00000271628 TAX1BP3O14907 124 aa11.42□□□□□ -0.58
SF3B4-201ENST00000271628 FHL3Q13643 280 aa11.42□□□□□ -0.58
SF3B4-201ENST00000271628 ANXA2RQ3ZCQ2 193 aa11.42□□□□□ -0.58
SF3B4-201ENST00000271628 DYNLRB2Q8TF09 96 aa11.42□□□□□ -0.58
SF3B4-201ENST00000271628 IFI27L1Q96BM0 104 aa11.42□□□□□ -0.58
SF3B4-201ENST00000271628 MAP1LC3AQ9H492 121 aa11.42□□□□□ -0.58
SF3B4-201ENST00000271628 CBY1Q9Y3M2 126 aa11.42□□□□□ -0.58
SF3B4-201ENST00000271628 NDUFA7O95182 113 aa11.42□□□□□ -0.58
SF3B4-201ENST00000271628 RNF185Q96GF1 192 aa11.42□□□□□ -0.58
SF3B4-201ENST00000271628 RAX2Q96IS3 184 aa11.42□□□□□ -0.58
SF3B4-201ENST00000271628 CCL24O00175 119 aa11.41□□□□□ -0.58
SF3B4-201ENST00000271628 VAMP3Q15836 100 aa11.41□□□□□ -0.58
SF3B4-201ENST00000271628 FAM159AQ6UWV7 190 aa11.41□□□□□ -0.58
SF3B4-201ENST00000271628 C2orf91Q6ZV80 131 aa11.41□□□□□ -0.58
SF3B4-201ENST00000271628 H3BVH4 76 aa11.4□□□□□ -0.58
SF3B4-201ENST00000271628 CDKN1BP46527 198 aa11.4□□□□□ -0.58
SF3B4-201ENST00000271628 KIR3DS1Q14943 382 aa11.4□□□□□ -0.58
SF3B4-201ENST00000271628 C11orf44Q8N8P7 122 aa11.4□□□□□ -0.58
SF3B4-201ENST00000271628 CITED2Q99967 270 aaPredicted RBP11.4□□□□□ -0.58
SF3B4-201ENST00000271628 NXT2Q9NPJ8 142 aaKnown RBP11.4□□□□□ -0.58
SF3B4-201ENST00000271628 C7orf71A4D174 169 aa11.4□□□□□ -0.58
SF3B4-201ENST00000271628 SMKR1H3BMG3 65 aa11.4□□□□□ -0.58
SF3B4-201ENST00000271628 DEFB114Q30KQ6 69 aa11.4□□□□□ -0.58
SF3B4-201ENST00000271628 TMEM61Q8N0U2 210 aa11.4□□□□□ -0.58
SF3B4-201ENST00000271628 K7EP13 123 aa11.39□□□□□ -0.59
SF3B4-201ENST00000271628 FGF6P10767 208 aa11.39□□□□□ -0.59
SF3B4-201ENST00000271628 SEC11AP67812 179 aa11.39□□□□□ -0.59
SF3B4-201ENST00000271628 OR4C5Q8NGB2 326 aa11.39□□□□□ -0.59
SF3B4-201ENST00000271628 HIVEP2P31629 2446 aa11.39□□□□□ -0.59
SF3B4-201ENST00000271628 OTOGQ6ZRI0 2925 aa11.39□□□□□ -0.59
SF3B4-201ENST00000271628 A0A1W2PRX2 142 aa11.39□□□□□ -0.59
SF3B4-201ENST00000271628 SIVA1O15304 175 aa11.39□□□□□ -0.59
SF3B4-201ENST00000271628 ANKRD39Q53RE8 183 aa11.39□□□□□ -0.59
SF3B4-201ENST00000271628 BOD1L2Q8IYS8 172 aa11.39□□□□□ -0.59
SF3B4-201ENST00000271628 PHLDA3Q9Y5J5 127 aa11.39□□□□□ -0.59
SF3B4-201ENST00000271628 TRAV25A0A0B4J276 109 aa11.38□□□□□ -0.59
SF3B4-201ENST00000271628 TNFRSF6BO95407 300 aa11.38□□□□□ -0.59
SF3B4-201ENST00000271628 EVI2AP22794 236 aa11.38□□□□□ -0.59
SF3B4-201ENST00000271628 TMEM97Q5BJF2 176 aa11.38□□□□□ -0.59
SF3B4-201ENST00000271628 SPAG8Q99932 426 aaPredicted RBP11.38□□□□□ -0.59
SF3B4-201ENST00000271628 TRAV12-3A0A0B4J271 114 aa11.37□□□□□ -0.59
SF3B4-201ENST00000271628 IGKV3-20P01619 116 aa11.37□□□□□ -0.59
SF3B4-201ENST00000271628 FCER1GP30273 86 aa11.37□□□□□ -0.59
SF3B4-201ENST00000271628 DEFB131AP59861 70 aa11.37□□□□□ -0.59
SF3B4-201ENST00000271628 GNRH2O43555 120 aa11.37□□□□□ -0.59
SF3B4-201ENST00000271628 FXYD7P58549 80 aa11.37□□□□□ -0.59
SF3B4-201ENST00000271628 HIST2H2BDQ6DRA6 164 aa11.37□□□□□ -0.59
SF3B4-201ENST00000271628 RNASE3P12724 160 aaKnown RBP11.36□□□□□ -0.59
SF3B4-201ENST00000271628 PROK1P58294 105 aa11.36□□□□□ -0.59
SF3B4-201ENST00000271628 CD300EQ496F6 205 aaPredicted RBP11.36□□□□□ -0.59
SF3B4-201ENST00000271628 MTORP42345 2549 aa11.36□□□□□ -0.59
SF3B4-201ENST00000271628 HLA-DRB4P13762 266 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms