RNA–Protein interactions for RNA: ENST00000221922.10

CCDC9-201, Transcript of coiled-coil domain containing 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC9, Length 2,093 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-201ENST00000221922 TRBV7-9A0A0J9YWB2 115 aa16.76■□□□□ 0.27
CCDC9-201ENST00000221922 H3BUT2 72 aa16.76■□□□□ 0.27
CCDC9-201ENST00000221922 PSMB8P28062 276 aa16.76■□□□□ 0.27
CCDC9-201ENST00000221922 TM4SF20Q53R12 229 aa16.76■□□□□ 0.27
CCDC9-201ENST00000221922 USP9YO00507 2555 aaPredicted RBP16.75■□□□□ 0.27
CCDC9-201ENST00000221922 CSPG4Q6UVK1 2322 aa16.75■□□□□ 0.27
CCDC9-201ENST00000221922 POLQO75417 2590 aa16.75■□□□□ 0.27
CCDC9-201ENST00000221922 H3BVH4 76 aa16.75■□□□□ 0.27
CCDC9-201ENST00000221922 TMEM95Q3KNT9 176 aa16.75■□□□□ 0.27
CCDC9-201ENST00000221922 MYOZ3Q8TDC0 251 aa16.75■□□□□ 0.27
CCDC9-201ENST00000221922 VPREB3Q9UKI3 123 aa16.74■□□□□ 0.27
CCDC9-201ENST00000221922 K7EP34 96 aa16.74■□□□□ 0.27
CCDC9-201ENST00000221922 PTPN13Q12923 2485 aa16.74■□□□□ 0.27
CCDC9-201ENST00000221922 RNF151Q2KHN1 245 aa16.73■□□□□ 0.27
CCDC9-201ENST00000221922 ZC2HC1BQ5TFG8 222 aa16.73■□□□□ 0.27
CCDC9-201ENST00000221922 FAM19A4Q96LR4 140 aa16.73■□□□□ 0.27
CCDC9-201ENST00000221922 CENPEQ02224 2701 aa16.73■□□□□ 0.27
CCDC9-201ENST00000221922 Q6YL49 198 aa16.73■□□□□ 0.27
CCDC9-201ENST00000221922 GTSCR1Q86UQ5 136 aa16.73■□□□□ 0.27
CCDC9-201ENST00000221922 MRPL35Q9NZE8 188 aaKnown RBP16.73■□□□□ 0.27
CCDC9-201ENST00000221922 A0A087WX48 190 aa16.72■□□□□ 0.27
CCDC9-201ENST00000221922 C21orf62-AS1Q17RA5 79 aa16.72■□□□□ 0.27
CCDC9-201ENST00000221922 APRG1Q8IVJ8 170 aa16.72■□□□□ 0.27
CCDC9-201ENST00000221922 TTTY13Q9BZ97 58 aa16.72■□□□□ 0.27
CCDC9-201ENST00000221922 CSMD2Q7Z408 3487 aa16.72■□□□□ 0.27
CCDC9-201ENST00000221922 ID1P41134 155 aa16.71■□□□□ 0.27
CCDC9-201ENST00000221922 PRRC2AP48634 2157 aaKnown RBP16.71■□□□□ 0.27
CCDC9-201ENST00000221922 CHAC1Q9BUX1 264 aa16.71■□□□□ 0.27
CCDC9-201ENST00000221922 TRBV25-1A0A075B6N4 114 aa16.71■□□□□ 0.27
CCDC9-201ENST00000221922 SMIM2Q9BVW6 85 aa16.71■□□□□ 0.27
CCDC9-201ENST00000221922 A0A1W2PPM0 123 aa16.7■□□□□ 0.26
CCDC9-201ENST00000221922 J3KRW8 73 aa16.7■□□□□ 0.26
CCDC9-201ENST00000221922 TMEM160Q9NX00 188 aa16.7■□□□□ 0.26
CCDC9-201ENST00000221922 IGKV3-7A0A075B6H7 116 aa16.69■□□□□ 0.26
CCDC9-201ENST00000221922 SMIM13P0DJ93 91 aa16.69■□□□□ 0.26
CCDC9-201ENST00000221922 MED14OSP0DP75 135 aa16.69■□□□□ 0.26
CCDC9-201ENST00000221922 RAB37Q96AX2 223 aa16.69■□□□□ 0.26
CCDC9-201ENST00000221922 ASIPP42127 132 aa16.69■□□□□ 0.26
CCDC9-201ENST00000221922 NAA38Q9BRA0 125 aaKnown RBP16.69■□□□□ 0.26
CCDC9-201ENST00000221922 K7ERU9 68 aa16.68■□□□□ 0.26
CCDC9-201ENST00000221922 GCSHP23434 173 aa16.68■□□□□ 0.26
CCDC9-201ENST00000221922 S100A4P26447 101 aaKnown RBP16.68■□□□□ 0.26
CCDC9-201ENST00000221922 FXYD2P54710 66 aa16.68■□□□□ 0.26
CCDC9-201ENST00000221922 Q96MF0 132 aa16.68■□□□□ 0.26
CCDC9-201ENST00000221922 NAV2Q8IVL1 2488 aa16.68■□□□□ 0.26
CCDC9-201ENST00000221922 TRAV12-1A0A0B4J245 112 aa16.68■□□□□ 0.26
CCDC9-201ENST00000221922 PLNP26678 52 aa16.68■□□□□ 0.26
CCDC9-201ENST00000221922 KRTAP1-3Q8IUG1 177 aa16.68■□□□□ 0.26
CCDC9-201ENST00000221922 C20orf78Q9BR46 151 aa16.68■□□□□ 0.26
CCDC9-201ENST00000221922 TM2D2Q9BX73 214 aa16.68■□□□□ 0.26
CCDC9-201ENST00000221922 RNASE4P34096 147 aaKnown RBP16.67■□□□□ 0.26
CCDC9-201ENST00000221922 DEFB1P60022 68 aa16.67■□□□□ 0.26
CCDC9-201ENST00000221922 F6UB75 175 aa16.66■□□□□ 0.26
CCDC9-201ENST00000221922 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP16.66■□□□□ 0.26
CCDC9-201ENST00000221922 ORMDL2Q53FV1 153 aa16.66■□□□□ 0.26
CCDC9-201ENST00000221922 RASL10AQ92737 203 aa16.66■□□□□ 0.26
CCDC9-201ENST00000221922 DPH3P1Q9H4G8 78 aa16.66■□□□□ 0.26
CCDC9-201ENST00000221922 ZANQ9Y493 2812 aa16.66■□□□□ 0.26
CCDC9-201ENST00000221922 K7EMI3 77 aa16.66■□□□□ 0.26
CCDC9-201ENST00000221922 SUMO2P61956 95 aaKnown RBP16.66■□□□□ 0.26
CCDC9-201ENST00000221922 ANXA2RQ3ZCQ2 193 aa16.66■□□□□ 0.26
CCDC9-201ENST00000221922 OR5A1Q8NGJ0 315 aa16.66■□□□□ 0.26
CCDC9-201ENST00000221922 DCANP1Q8TF63 244 aa16.65■□□□□ 0.26
CCDC9-201ENST00000221922 ZNF702PQ9H963 129 aa16.65■□□□□ 0.26
CCDC9-201ENST00000221922 ABCA12Q86UK0 2595 aa16.65■□□□□ 0.26
CCDC9-201ENST00000221922 M0R381 172 aa16.65■□□□□ 0.26
CCDC9-201ENST00000221922 C10orf99Q6UWK7 81 aa16.65■□□□□ 0.26
CCDC9-201ENST00000221922 TOMM6Q96B49 74 aa16.65■□□□□ 0.26
CCDC9-201ENST00000221922 VPS25Q9BRG1 176 aa16.65■□□□□ 0.26
CCDC9-201ENST00000221922 PHLDA3Q9Y5J5 127 aa16.65■□□□□ 0.26
CCDC9-201ENST00000221922 H7C1H1 209 aa16.64■□□□□ 0.25
CCDC9-201ENST00000221922 SAMD5Q5TGI4 173 aa16.64■□□□□ 0.25
CCDC9-201ENST00000221922 CEND1Q8N111 149 aa16.64■□□□□ 0.25
CCDC9-201ENST00000221922 MAPKAPK5-AS1Q8N8E1 139 aa16.64■□□□□ 0.25
CCDC9-201ENST00000221922 PHLDA1Q8WV24 401 aaPredicted RBP16.64■□□□□ 0.25
CCDC9-201ENST00000221922 SPCS1Q9Y6A9 102 aa16.64■□□□□ 0.25
CCDC9-201ENST00000221922 HOXA3O43365 443 aaPredicted RBP16.63■□□□□ 0.25
CCDC9-201ENST00000221922 ELANEP08246 267 aa16.63■□□□□ 0.25
CCDC9-201ENST00000221922 FABP2P12104 132 aa16.63■□□□□ 0.25
CCDC9-201ENST00000221922 SRD5A1P18405 259 aa16.63■□□□□ 0.25
CCDC9-201ENST00000221922 F8VRH5 84 aa16.63■□□□□ 0.25
CCDC9-201ENST00000221922 TAL2Q16559 108 aa16.63■□□□□ 0.25
CCDC9-201ENST00000221922 KLLNB2CW77 178 aa16.62■□□□□ 0.25
CCDC9-201ENST00000221922 EDN2P20800 178 aa16.62■□□□□ 0.25
CCDC9-201ENST00000221922 LGALS1P09382 135 aaKnown RBP16.61■□□□□ 0.25
CCDC9-201ENST00000221922 C14orf178Q8N769 122 aaPredicted RBP16.61■□□□□ 0.25
CCDC9-201ENST00000221922 SPRY2O43597 315 aa16.61■□□□□ 0.25
CCDC9-201ENST00000221922 CREBBPQ92793 2442 aa16.61■□□□□ 0.25
CCDC9-201ENST00000221922 SCGB3A1Q96QR1 104 aa16.61■□□□□ 0.25
CCDC9-201ENST00000221922 RNASE3P12724 160 aaKnown RBP16.6■□□□□ 0.25
CCDC9-201ENST00000221922 NEGR1Q7Z3B1 354 aa16.6■□□□□ 0.25
CCDC9-201ENST00000221922 POM121L12Q8N7R1 296 aa16.6■□□□□ 0.25
CCDC9-201ENST00000221922 NEXN-AS1Q8NBZ9 246 aa16.6■□□□□ 0.25
CCDC9-201ENST00000221922 RPL39LQ96EH5 51 aaKnown RBP16.6■□□□□ 0.25
CCDC9-201ENST00000221922 SAP30O75446 220 aa16.6■□□□□ 0.25
CCDC9-201ENST00000221922 RNF152Q8N8N0 203 aa16.6■□□□□ 0.25
CCDC9-201ENST00000221922 ODF3Q96PU9 254 aa16.6■□□□□ 0.25
CCDC9-201ENST00000221922 SELENOKQ9Y6D0 94 aa16.6■□□□□ 0.25
CCDC9-201ENST00000221922 LGALS9O00182 355 aa16.59■□□□□ 0.25
CCDC9-201ENST00000221922 NXPH4O95158 308 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms