RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 RNF212Q495C1 297 aa13.52□□□□□ -0.25
CLN3-260ENST00000637578 C11orf52Q96A22 123 aa13.52□□□□□ -0.25
CLN3-260ENST00000637578 C8orf49Q96NF6 230 aa13.52□□□□□ -0.25
CLN3-260ENST00000637578 RBFOX3A6NFN3 312 aa13.51□□□□□ -0.25
CLN3-260ENST00000637578 UBE2G1P62253 170 aa13.51□□□□□ -0.25
CLN3-260ENST00000637578 IFITM2Q01629 132 aa13.51□□□□□ -0.25
CLN3-260ENST00000637578 DAZ2Q13117 558 aaKnown RBP13.51□□□□□ -0.25
CLN3-260ENST00000637578 TMEM183BQ1AE95 376 aa13.51□□□□□ -0.25
CLN3-260ENST00000637578 F5H768 121 aa13.5□□□□□ -0.25
CLN3-260ENST00000637578 C11orf72Q8NBR9 251 aa13.5□□□□□ -0.25
CLN3-260ENST00000637578 PDE6DO43924 150 aa13.49□□□□□ -0.25
CLN3-260ENST00000637578 ANXA2RQ3ZCQ2 193 aa13.49□□□□□ -0.25
CLN3-260ENST00000637578 TOR2AQ5JU69 321 aa13.49□□□□□ -0.25
CLN3-260ENST00000637578 ZNF506Q5JVG8 444 aa13.49□□□□□ -0.25
CLN3-260ENST00000637578 SAPCD1Q5SSQ6 148 aa13.49□□□□□ -0.25
CLN3-260ENST00000637578 Q6AWC8 147 aa13.49□□□□□ -0.25
CLN3-260ENST00000637578 TRBV6-1A0A0K0K1D8 114 aa13.49□□□□□ -0.25
CLN3-260ENST00000637578 LTAP01374 205 aa13.49□□□□□ -0.25
CLN3-260ENST00000637578 FAM210AQ96ND0 272 aa13.49□□□□□ -0.25
CLN3-260ENST00000637578 DERL1Q9BUN8 251 aa13.49□□□□□ -0.25
CLN3-260ENST00000637578 SNURFLB1AK76 121 aa13.48□□□□□ -0.25
CLN3-260ENST00000637578 EIF4E3Q8N5X7 224 aaKnown RBP13.48□□□□□ -0.25
CLN3-260ENST00000637578 GCGP01275 180 aa13.47□□□□□ -0.25
CLN3-260ENST00000637578 S100A9P06702 114 aaKnown RBP13.47□□□□□ -0.25
CLN3-260ENST00000637578 RPL35P42766 123 aaKnown RBP13.47□□□□□ -0.25
CLN3-260ENST00000637578 ZNF80P51504 273 aaPredicted RBP13.47□□□□□ -0.25
CLN3-260ENST00000637578 LGALS9BQ3B8N2 356 aa13.47□□□□□ -0.25
CLN3-260ENST00000637578 SMUG1Q53HV7 270 aa13.47□□□□□ -0.25
CLN3-260ENST00000637578 EIF5A2Q9GZV4 153 aaKnown RBP13.47□□□□□ -0.25
CLN3-260ENST00000637578 ZFP30Q9Y2G7 519 aa13.47□□□□□ -0.25
CLN3-260ENST00000637578 UBE2DNLQ8IWF7 75 aa13.46□□□□□ -0.25
CLN3-260ENST00000637578 C18orf15Q96N68 181 aa13.46□□□□□ -0.25
CLN3-260ENST00000637578 GSN-AS1Q9NRJ2 163 aa13.46□□□□□ -0.25
CLN3-260ENST00000637578 MED9Q9NWA0 146 aa13.46□□□□□ -0.25
CLN3-260ENST00000637578 TRAV21A0A0B4J279 112 aa13.45□□□□□ -0.26
CLN3-260ENST00000637578 GAGE12BA1L429 117 aa13.45□□□□□ -0.26
CLN3-260ENST00000637578 RGS13O14921 159 aa13.45□□□□□ -0.26
CLN3-260ENST00000637578 GAGE7O76087 117 aa13.45□□□□□ -0.26
CLN3-260ENST00000637578 GAGE12FP0CL80 117 aa13.45□□□□□ -0.26
CLN3-260ENST00000637578 GAGE12GP0CL81 117 aa13.45□□□□□ -0.26
CLN3-260ENST00000637578 GAGE12IP0CL82 117 aa13.45□□□□□ -0.26
CLN3-260ENST00000637578 FAM3BP58499 235 aaPredicted RBP13.45□□□□□ -0.26
CLN3-260ENST00000637578 MUC21Q5SSG8 566 aa13.45□□□□□ -0.26
CLN3-260ENST00000637578 NHLRC2Q8NBF2 726 aa13.45□□□□□ -0.26
CLN3-260ENST00000637578 IGHV1OR15-1A0A075B7D0 117 aa13.45□□□□□ -0.26
CLN3-260ENST00000637578 RAB14P61106 215 aa13.45□□□□□ -0.26
CLN3-260ENST00000637578 IBA57Q5T440 356 aaKnown RBP13.45□□□□□ -0.26
CLN3-260ENST00000637578 Q6ZR54 194 aa13.45□□□□□ -0.26
CLN3-260ENST00000637578 Q6ZTI0 123 aa13.45□□□□□ -0.26
CLN3-260ENST00000637578 COX8CQ7Z4L0 72 aa13.45□□□□□ -0.26
CLN3-260ENST00000637578 BAGE2Q86Y30 109 aa13.45□□□□□ -0.26
CLN3-260ENST00000637578 ZC2HC1AQ96GY0 325 aa13.45□□□□□ -0.26
CLN3-260ENST00000637578 PFN1P07737 140 aaKnown RBP13.44□□□□□ -0.26
CLN3-260ENST00000637578 HOXA5P20719 270 aa13.44□□□□□ -0.26
CLN3-260ENST00000637578 TCL1AP56279 114 aa13.44□□□□□ -0.26
CLN3-260ENST00000637578 TMEM183AQ8IXX5 376 aa13.44□□□□□ -0.26
CLN3-260ENST00000637578 NAGKQ9UJ70 344 aa13.44□□□□□ -0.26
CLN3-260ENST00000637578 TMEM250H0YL14 139 aa13.43□□□□□ -0.26
CLN3-260ENST00000637578 CENPWQ5EE01 88 aa13.43□□□□□ -0.26
CLN3-260ENST00000637578 TP53TG3Q9ULZ0 132 aa13.43□□□□□ -0.26
CLN3-260ENST00000637578 HECTD4Q9Y4D8 3996 aa13.43□□□□□ -0.26
CLN3-260ENST00000637578 DNAH2Q9P225 4427 aa13.42□□□□□ -0.26
CLN3-260ENST00000637578 RAB19A4D1S5 217 aa13.42□□□□□ -0.26
CLN3-260ENST00000637578 SPINK4O60575 86 aa13.42□□□□□ -0.26
CLN3-260ENST00000637578 NUDT3O95989 172 aa13.42□□□□□ -0.26
CLN3-260ENST00000637578 CRIP1P50238 77 aa13.42□□□□□ -0.26
CLN3-260ENST00000637578 FAM159AQ6UWV7 190 aa13.42□□□□□ -0.26
CLN3-260ENST00000637578 LINC00336Q6ZUF6 198 aa13.42□□□□□ -0.26
CLN3-260ENST00000637578 MLST8Q9BVC4 326 aa13.42□□□□□ -0.26
CLN3-260ENST00000637578 C11orf21Q9P2W6 132 aa13.42□□□□□ -0.26
CLN3-260ENST00000637578 NACAE9PAV3 2078 aa13.42□□□□□ -0.26
CLN3-260ENST00000637578 TRBV20OR9-2A0A075B6H5 130 aa13.41□□□□□ -0.26
CLN3-260ENST00000637578 H3BNG1 76 aa13.41□□□□□ -0.26
CLN3-260ENST00000637578 M0R2N4 97 aa13.41□□□□□ -0.26
CLN3-260ENST00000637578 CLLU1Q5K131 121 aa13.41□□□□□ -0.26
CLN3-260ENST00000637578 FAT2Q9NYQ8 4349 aa13.41□□□□□ -0.26
CLN3-260ENST00000637578 TRAV26-1A0A087WT03 109 aa13.41□□□□□ -0.26
CLN3-260ENST00000637578 OR5I1Q13606 314 aa13.41□□□□□ -0.26
CLN3-260ENST00000637578 TDRG1Q3Y452 100 aa13.41□□□□□ -0.26
CLN3-260ENST00000637578 DNAH17Q9UFH2 4485 aa13.4□□□□□ -0.26
CLN3-260ENST00000637578 IGLV2-18A0A075B6J9 118 aa13.4□□□□□ -0.26
CLN3-260ENST00000637578 RTL8CO15255 209 aa13.4□□□□□ -0.26
CLN3-260ENST00000637578 NDUFS6O75380 124 aaKnown RBP13.4□□□□□ -0.26
CLN3-260ENST00000637578 SRP19P09132 144 aaKnown RBP13.4□□□□□ -0.26
CLN3-260ENST00000637578 GNG4P50150 75 aa13.4□□□□□ -0.26
CLN3-260ENST00000637578 CEBPGP53567 150 aa13.4□□□□□ -0.26
CLN3-260ENST00000637578 SRSF3P84103 164 aaKnown RBP13.4□□□□□ -0.26
CLN3-260ENST00000637578 ZNF674Q2M3X9 581 aa13.4□□□□□ -0.26
CLN3-260ENST00000637578 FAM162BQ5T6X4 162 aa13.4□□□□□ -0.26
CLN3-260ENST00000637578 PARLQ9H300 379 aa13.4□□□□□ -0.26
CLN3-260ENST00000637578 TRGV1A0A0A0MS02 117 aa13.39□□□□□ -0.27
CLN3-260ENST00000637578 FABP5P3A8MUU1 101 aa13.39□□□□□ -0.27
CLN3-260ENST00000637578 SH2D1AO60880 128 aa13.39□□□□□ -0.27
CLN3-260ENST00000637578 ZNRF2Q8NHG8 242 aa13.39□□□□□ -0.27
CLN3-260ENST00000637578 TRGV2A0A075B6R0 118 aa13.38□□□□□ -0.27
CLN3-260ENST00000637578 PGPEP1LA6NFU8 196 aa13.38□□□□□ -0.27
CLN3-260ENST00000637578 C9JQL5 133 aa13.38□□□□□ -0.27
CLN3-260ENST00000637578 IGLV2-8P01709 118 aa13.38□□□□□ -0.27
CLN3-260ENST00000637578 CCL18P55774 89 aa13.38□□□□□ -0.27
CLN3-260ENST00000637578 LINC00588Q9Y4M8 146 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms