RNA–Protein interactions for RNA: ENST00000637107.1

CLN3-256, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,946 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-256ENST00000637107 FABP5P3A8MUU1 101 aa13.03□□□□□ -0.32
CLN3-256ENST00000637107 HOXD3P31249 432 aaPredicted RBP13.03□□□□□ -0.32
CLN3-256ENST00000637107 Q8N976 141 aa13.03□□□□□ -0.32
CLN3-256ENST00000637107 CLEC5AQ9NY25 188 aa13.03□□□□□ -0.32
CLN3-256ENST00000637107 DLX4Q92988 240 aaPredicted RBP13.02□□□□□ -0.32
CLN3-256ENST00000637107 C16orf92Q96LL3 132 aa13.02□□□□□ -0.32
CLN3-256ENST00000637107 FAM209BQ5JX69 171 aa13.01□□□□□ -0.33
CLN3-256ENST00000637107 ZNF493Q6ZR52 646 aa13.01□□□□□ -0.33
CLN3-256ENST00000637107 ZNF575Q86XF7 245 aa13.01□□□□□ -0.33
CLN3-256ENST00000637107 M0R2Z0 102 aa13.01□□□□□ -0.33
CLN3-256ENST00000637107 C3orf79P0CE67 100 aa13.01□□□□□ -0.33
CLN3-256ENST00000637107 IGLC6P0CF74 106 aa13.01□□□□□ -0.33
CLN3-256ENST00000637107 ZNF138P52744 262 aa13.01□□□□□ -0.33
CLN3-256ENST00000637107 REC114Q7Z4M0 266 aa13.01□□□□□ -0.33
CLN3-256ENST00000637107 C14orf144Q96I85 54 aa13.01□□□□□ -0.33
CLN3-256ENST00000637107 KIR2DL5BA0A0G2JN68 375 aa13□□□□□ -0.33
CLN3-256ENST00000637107 KIR2DL5BA0A0G2JPC4 375 aa13□□□□□ -0.33
CLN3-256ENST00000637107 TMEM213A2RRL7 107 aa13□□□□□ -0.33
CLN3-256ENST00000637107 ORM1P02763 201 aa13□□□□□ -0.33
CLN3-256ENST00000637107 CTRLP40313 264 aa13□□□□□ -0.33
CLN3-256ENST00000637107 TMEM78Q5T7P6 136 aa13□□□□□ -0.33
CLN3-256ENST00000637107 C9orf47Q6ZRZ4 202 aa13□□□□□ -0.33
CLN3-256ENST00000637107 GPHB5Q86YW7 130 aa13□□□□□ -0.33
CLN3-256ENST00000637107 KIR2DL5AQ8N109 375 aa13□□□□□ -0.33
CLN3-256ENST00000637107 FER1L6-AS1Q8NA97 138 aa13□□□□□ -0.33
CLN3-256ENST00000637107 CHCHD1Q96BP2 118 aaKnown RBP13□□□□□ -0.33
CLN3-256ENST00000637107 C20orf173Q96LM9 149 aa13□□□□□ -0.33
CLN3-256ENST00000637107 MGAM2Q2M2H8 2515 aa13□□□□□ -0.33
CLN3-256ENST00000637107 LINC01559Q495D7 138 aa13□□□□□ -0.33
CLN3-256ENST00000637107 WFDC9Q8NEX5 89 aa13□□□□□ -0.33
CLN3-256ENST00000637107 TDRG1Q3Y452 100 aa12.99□□□□□ -0.33
CLN3-256ENST00000637107 PPP1R14DQ9NXH3 145 aa12.99□□□□□ -0.33
CLN3-256ENST00000637107 IGHV7-4-1A0A0J9YVY3 117 aa12.98□□□□□ -0.33
CLN3-256ENST00000637107 SOCS3O14543 225 aa12.98□□□□□ -0.33
CLN3-256ENST00000637107 SYNJ2BPP57105 145 aa12.98□□□□□ -0.33
CLN3-256ENST00000637107 SSTP61278 116 aa12.98□□□□□ -0.33
CLN3-256ENST00000637107 MUC21A0A0G2JKD1 596 aa12.98□□□□□ -0.33
CLN3-256ENST00000637107 MUC21A0A140T8X8 626 aa12.98□□□□□ -0.33
CLN3-256ENST00000637107 LINC00614P0C842 121 aa12.98□□□□□ -0.33
CLN3-256ENST00000637107 HIST1H1AQ02539 215 aaPredicted RBP12.98□□□□□ -0.33
CLN3-256ENST00000637107 MUC21Q5SSG8 566 aa12.98□□□□□ -0.33
CLN3-256ENST00000637107 ZNF738Q8NE65 137 aa12.98□□□□□ -0.33
CLN3-256ENST00000637107 NDUFAF3Q9BU61 184 aa12.98□□□□□ -0.33
CLN3-256ENST00000637107 TM4SF20Q53R12 229 aa12.97□□□□□ -0.33
CLN3-256ENST00000637107 FAM104BQ5XKR9 115 aa12.97□□□□□ -0.33
CLN3-256ENST00000637107 EBLN2Q6P2I7 272 aa12.97□□□□□ -0.33
CLN3-256ENST00000637107 OVOL1O14753 267 aa12.96□□□□□ -0.33
CLN3-256ENST00000637107 IGLL1P15814 213 aa12.96□□□□□ -0.33
CLN3-256ENST00000637107 DMRTA1Q5VZB9 504 aa12.96□□□□□ -0.33
CLN3-256ENST00000637107 RHPN1-AS1Q9BWJ2 59 aa12.96□□□□□ -0.33
CLN3-256ENST00000637107 K7EMT4 169 aa12.96□□□□□ -0.34
CLN3-256ENST00000637107 PMCHL1Q16048 86 aa12.96□□□□□ -0.34
CLN3-256ENST00000637107 AMN1Q8IY45 258 aa12.96□□□□□ -0.34
CLN3-256ENST00000637107 VAMP8Q9BV40 100 aa12.96□□□□□ -0.34
CLN3-256ENST00000637107 DAZ1Q9NQZ3 744 aaKnown RBP12.96□□□□□ -0.34
CLN3-256ENST00000637107 C11orf21Q9P2W6 132 aa12.96□□□□□ -0.34
CLN3-256ENST00000637107 SMPXQ9UHP9 88 aa12.96□□□□□ -0.34
CLN3-256ENST00000637107 IGKV3D-20A0A0C4DH25 116 aa12.95□□□□□ -0.34
CLN3-256ENST00000637107 IGHV1-24A0A0C4DH33 117 aa12.95□□□□□ -0.34
CLN3-256ENST00000637107 CSN3P07498 182 aa12.95□□□□□ -0.34
CLN3-256ENST00000637107 FAM106AQ4KMX7 169 aa12.95□□□□□ -0.34
CLN3-256ENST00000637107 C20orf144Q9BQM9 153 aa12.95□□□□□ -0.34
CLN3-256ENST00000637107 U3KQK5 164 aa12.95□□□□□ -0.34
CLN3-256ENST00000637107 C2orf70A6NJV1 201 aa12.94□□□□□ -0.34
CLN3-256ENST00000637107 TWIST1Q15672 202 aa12.94□□□□□ -0.34
CLN3-256ENST00000637107 OXLD1Q5BKU9 147 aa12.94□□□□□ -0.34
CLN3-256ENST00000637107 PAM16Q9Y3D7 125 aa12.94□□□□□ -0.34
CLN3-256ENST00000637107 LENEPQ9Y5L5 61 aa12.94□□□□□ -0.34
CLN3-256ENST00000637107 EDN2P20800 178 aa12.94□□□□□ -0.34
CLN3-256ENST00000637107 RPL11P62913 178 aaKnown RBP12.94□□□□□ -0.34
CLN3-256ENST00000637107 MRPL51Q4U2R6 128 aaKnown RBP12.94□□□□□ -0.34
CLN3-256ENST00000637107 OR9G4Q8NGQ1 327 aa12.94□□□□□ -0.34
CLN3-256ENST00000637107 LINC00477Q96M19 166 aa12.94□□□□□ -0.34
CLN3-256ENST00000637107 CNFNQ9BYD5 112 aa12.94□□□□□ -0.34
CLN3-256ENST00000637107 D6R8Y8 96 aa12.93□□□□□ -0.34
CLN3-256ENST00000637107 BTF3P20290 206 aaKnown RBP12.93□□□□□ -0.34
CLN3-256ENST00000637107 RAB4AP20338 218 aa12.93□□□□□ -0.34
CLN3-256ENST00000637107 OR10J6PQ8NGY7 276 aa12.92□□□□□ -0.34
CLN3-256ENST00000637107 MSRB1Q9NZV6 116 aa12.92□□□□□ -0.34
CLN3-256ENST00000637107 G3V4G9 280 aa12.92□□□□□ -0.34
CLN3-256ENST00000637107 PRR9Q5T870 116 aa12.92□□□□□ -0.34
CLN3-256ENST00000637107 PRELID3AQ96N28 172 aa12.92□□□□□ -0.34
CLN3-256ENST00000637107 TMEM191AQ9H0A3 160 aa12.92□□□□□ -0.34
CLN3-256ENST00000637107 IGKV3-7A0A075B6H7 116 aa12.91□□□□□ -0.34
CLN3-256ENST00000637107 LGALS9O00182 355 aa12.91□□□□□ -0.34
CLN3-256ENST00000637107 Q6ZQT7 251 aa12.91□□□□□ -0.34
CLN3-256ENST00000637107 ORMDL3Q8N138 153 aa12.91□□□□□ -0.34
CLN3-256ENST00000637107 PRSS3P2Q8NHM4 247 aa12.91□□□□□ -0.34
CLN3-256ENST00000637107 UFC1Q9Y3C8 167 aa12.91□□□□□ -0.34
CLN3-256ENST00000637107 NBEAL1Q6ZS30 2694 aa12.91□□□□□ -0.34
CLN3-256ENST00000637107 SAP30O75446 220 aa12.9□□□□□ -0.34
CLN3-256ENST00000637107 OR5AL1P0C617 328 aa12.9□□□□□ -0.34
CLN3-256ENST00000637107 DEFB1P60022 68 aa12.9□□□□□ -0.34
CLN3-256ENST00000637107 LINC00173Q6ZV60 143 aa12.9□□□□□ -0.34
CLN3-256ENST00000637107 TMEM70Q9BUB7 260 aa12.9□□□□□ -0.34
CLN3-256ENST00000637107 SELENOKQ9Y6D0 94 aa12.9□□□□□ -0.34
CLN3-256ENST00000637107 NOTCH1P46531 2555 aa12.9□□□□□ -0.34
CLN3-256ENST00000637107 LEPROTL1O95214 131 aa12.9□□□□□ -0.35
CLN3-256ENST00000637107 ADAMTSL5Q6ZMM2 481 aa12.9□□□□□ -0.35
CLN3-256ENST00000637107 FA2HQ7L5A8 372 aa12.9□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms