RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 WFDC2Q14508 124 aa11.4□□□□□ -0.59
CLN3-253ENST00000636977 ETDBQ3ZM63 59 aa11.4□□□□□ -0.59
CLN3-253ENST00000636977 TTTY13Q9BZ97 58 aa11.4□□□□□ -0.59
CLN3-253ENST00000636977 PRR9Q5T870 116 aa11.39□□□□□ -0.59
CLN3-253ENST00000636977 EEF1AKMT3Q96AZ1 226 aa11.39□□□□□ -0.59
CLN3-253ENST00000636977 NMUP48645 174 aa11.39□□□□□ -0.59
CLN3-253ENST00000636977 C20orf173Q96LM9 149 aa11.39□□□□□ -0.59
CLN3-253ENST00000636977 MAP1LC3AQ9H492 121 aa11.39□□□□□ -0.59
CLN3-253ENST00000636977 SAMD5Q5TGI4 173 aa11.38□□□□□ -0.59
CLN3-253ENST00000636977 METTL26Q96S19 204 aa11.38□□□□□ -0.59
CLN3-253ENST00000636977 HERV-K104P63124 156 aa11.38□□□□□ -0.59
CLN3-253ENST00000636977 UNQ9165/PRO28630Q6UXU0 137 aa11.38□□□□□ -0.59
CLN3-253ENST00000636977 IGHV7-4-1A0A0J9YVY3 117 aa11.37□□□□□ -0.59
CLN3-253ENST00000636977 K7ERJ3 54 aa11.37□□□□□ -0.59
CLN3-253ENST00000636977 SMAD7O15105 426 aaKnown RBP11.37□□□□□ -0.59
CLN3-253ENST00000636977 INSL3P51460 131 aa11.37□□□□□ -0.59
CLN3-253ENST00000636977 SRSF2Q01130 221 aaKnown RBP11.37□□□□□ -0.59
CLN3-253ENST00000636977 BOD1L2Q8IYS8 172 aa11.37□□□□□ -0.59
CLN3-253ENST00000636977 PIFOQ8TCI5 191 aa11.37□□□□□ -0.59
CLN3-253ENST00000636977 SLC50A1Q9BRV3 221 aa11.37□□□□□ -0.59
CLN3-253ENST00000636977 J3QR89 54 aa11.37□□□□□ -0.59
CLN3-253ENST00000636977 KLK9Q2XQG4 91 aa11.37□□□□□ -0.59
CLN3-253ENST00000636977 TMEM78Q5T7P6 136 aa11.37□□□□□ -0.59
CLN3-253ENST00000636977 ITLN2Q8WWU7 325 aaPredicted RBP11.37□□□□□ -0.59
CLN3-253ENST00000636977 KLK9Q9UKQ9 250 aa11.37□□□□□ -0.59
CLN3-253ENST00000636977 IGKV2D-26A0A0A0MRZ7 120 aa11.37□□□□□ -0.59
CLN3-253ENST00000636977 RBAKDNA6NC62 111 aa11.37□□□□□ -0.59
CLN3-253ENST00000636977 IGHV4-39P01824 125 aa11.37□□□□□ -0.59
CLN3-253ENST00000636977 UFC1Q9Y3C8 167 aa11.37□□□□□ -0.59
CLN3-253ENST00000636977 LCNL1Q6ZST4 164 aa11.36□□□□□ -0.59
CLN3-253ENST00000636977 TMEM158Q8WZ71 300 aa11.36□□□□□ -0.59
CLN3-253ENST00000636977 RNF183Q96D59 192 aa11.36□□□□□ -0.59
CLN3-253ENST00000636977 SPAG8Q99932 426 aaPredicted RBP11.36□□□□□ -0.59
CLN3-253ENST00000636977 CSMD2Q7Z408 3487 aa11.36□□□□□ -0.59
CLN3-253ENST00000636977 TRBV7-1A0A0A6YYK4 115 aa11.36□□□□□ -0.59
CLN3-253ENST00000636977 TRAV41A0A0B4J266 112 aa11.36□□□□□ -0.59
CLN3-253ENST00000636977 GCSHP23434 173 aa11.36□□□□□ -0.59
CLN3-253ENST00000636977 ZNF479Q96JC4 524 aa11.36□□□□□ -0.59
CLN3-253ENST00000636977 U3KQE9 123 aa11.36□□□□□ -0.59
CLN3-253ENST00000636977 LY6EQ16553 131 aa11.35□□□□□ -0.59
CLN3-253ENST00000636977 C16orf92Q96LL3 132 aa11.35□□□□□ -0.59
CLN3-253ENST00000636977 CRYBG3Q68DQ2 2970 aa11.35□□□□□ -0.59
CLN3-253ENST00000636977 FCER1GP30273 86 aa11.35□□□□□ -0.59
CLN3-253ENST00000636977 IGLV2-18A0A075B6J9 118 aa11.34□□□□□ -0.59
CLN3-253ENST00000636977 TRAV40A0A0B4J280 105 aa11.34□□□□□ -0.59
CLN3-253ENST00000636977 IGHV3-11P01762 117 aa11.34□□□□□ -0.59
CLN3-253ENST00000636977 GNLYP22749 145 aa11.34□□□□□ -0.59
CLN3-253ENST00000636977 ODF1Q14990 250 aa11.34□□□□□ -0.59
CLN3-253ENST00000636977 IGKV3-7A0A075B6H7 116 aa11.34□□□□□ -0.59
CLN3-253ENST00000636977 A1L4Q6 167 aa11.34□□□□□ -0.59
CLN3-253ENST00000636977 H3BVH4 76 aa11.34□□□□□ -0.59
CLN3-253ENST00000636977 PRSS1P07477 247 aa11.34□□□□□ -0.59
CLN3-253ENST00000636977 TCTEX1D4Q5JR98 221 aa11.34□□□□□ -0.59
CLN3-253ENST00000636977 GPHB5Q86YW7 130 aa11.34□□□□□ -0.59
CLN3-253ENST00000636977 C19orf54Q5BKX5 351 aa11.34□□□□□ -0.59
CLN3-253ENST00000636977 AMTNQ6UX39 209 aa11.34□□□□□ -0.59
CLN3-253ENST00000636977 Q6ZS46 218 aa11.34□□□□□ -0.59
CLN3-253ENST00000636977 DPF1Q92782 380 aa11.34□□□□□ -0.59
CLN3-253ENST00000636977 HHLA3Q9XRX5 114 aa11.34□□□□□ -0.59
CLN3-253ENST00000636977 LINC01546A6NGU7 62 aa11.33□□□□□ -0.6
CLN3-253ENST00000636977 B5MCH6 92 aa11.33□□□□□ -0.6
CLN3-253ENST00000636977 IGHV4-38-2P0DP08 117 aa11.33□□□□□ -0.6
CLN3-253ENST00000636977 C9orf47Q6ZRZ4 202 aa11.33□□□□□ -0.6
CLN3-253ENST00000636977 NRACQ8N912 160 aa11.33□□□□□ -0.6
CLN3-253ENST00000636977 GLMPQ8WWB7 406 aa11.33□□□□□ -0.6
CLN3-253ENST00000636977 FOXC2Q99958 501 aa11.33□□□□□ -0.6
CLN3-253ENST00000636977 C20orf78Q9BR46 151 aa11.33□□□□□ -0.6
CLN3-253ENST00000636977 UTP20O75691 2785 aaKnown RBP11.33□□□□□ -0.6
CLN3-253ENST00000636977 IGHV4-61A0A0C4DH41 118 aa11.33□□□□□ -0.6
CLN3-253ENST00000636977 ARL3P36405 182 aa11.33□□□□□ -0.6
CLN3-253ENST00000636977 KLK15Q9H2R5 256 aa11.33□□□□□ -0.6
CLN3-253ENST00000636977 MOB4Q9Y3A3 225 aa11.33□□□□□ -0.6
CLN3-253ENST00000636977 F6UB75 175 aa11.32□□□□□ -0.6
CLN3-253ENST00000636977 ANXA2RQ3ZCQ2 193 aa11.32□□□□□ -0.6
CLN3-253ENST00000636977 NXT2Q9NPJ8 142 aaKnown RBP11.32□□□□□ -0.6
CLN3-253ENST00000636977 CFAP46Q8IYW2 2715 aa11.32□□□□□ -0.6
CLN3-253ENST00000636977 H3BMG7 143 aa11.32□□□□□ -0.6
CLN3-253ENST00000636977 SPINK8P0C7L1 97 aa11.32□□□□□ -0.6
CLN3-253ENST00000636977 SPANXN1Q5VSR9 72 aa11.32□□□□□ -0.6
CLN3-253ENST00000636977 GTSCR1Q86UQ5 136 aa11.32□□□□□ -0.6
CLN3-253ENST00000636977 SPANXB1Q9NS25 103 aaPredicted RBP11.32□□□□□ -0.6
CLN3-253ENST00000636977 MRPL16Q9NX20 251 aaKnown RBP11.32□□□□□ -0.6
CLN3-253ENST00000636977 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.32□□□□□ -0.67e-9■■□□□ 13.5
CLN3-253ENST00000636977 Q8N8P6 123 aa11.31□□□□□ -0.6
CLN3-253ENST00000636977 IGHV1-69DA0A0B4J2H0 117 aa11.31□□□□□ -0.6
CLN3-253ENST00000636977 IGHV1-69P01742 117 aa11.31□□□□□ -0.6
CLN3-253ENST00000636977 SMIM13P0DJ93 91 aa11.31□□□□□ -0.6
CLN3-253ENST00000636977 EDN2P20800 178 aa11.31□□□□□ -0.6
CLN3-253ENST00000636977 SMIM20Q8N5G0 67 aa11.31□□□□□ -0.6
CLN3-253ENST00000636977 SPATA25Q9BR10 227 aa11.31□□□□□ -0.6
CLN3-253ENST00000636977 PGPEP1Q9NXJ5 209 aa11.31□□□□□ -0.6
CLN3-253ENST00000636977 FLNCQ14315 2725 aa11.3□□□□□ -0.6
CLN3-253ENST00000636977 BLCAPP62952 87 aa11.3□□□□□ -0.6
CLN3-253ENST00000636977 ZMAT4Q9H898 229 aa11.3□□□□□ -0.6
CLN3-253ENST00000636977 M0R381 172 aa11.29□□□□□ -0.6
CLN3-253ENST00000636977 SRD5A1P18405 259 aa11.29□□□□□ -0.6
CLN3-253ENST00000636977 RPL11P62913 178 aaKnown RBP11.29□□□□□ -0.6
CLN3-253ENST00000636977 MRPL53Q96EL3 112 aaKnown RBP11.29□□□□□ -0.6
CLN3-253ENST00000636977 NHP2Q9NX24 153 aaKnown RBP11.29□□□□□ -0.6
CLN3-253ENST00000636977 CSPG4Q6UVK1 2322 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms