RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 TRBV6-1A0A0K0K1D8 114 aa12.87□□□□□ -0.35
CLN3-239ENST00000628023 LTAP01374 205 aa12.87□□□□□ -0.35
CLN3-239ENST00000628023 TCL1AP56279 114 aa12.87□□□□□ -0.35
CLN3-239ENST00000628023 TEX261Q6UWH6 196 aa12.87□□□□□ -0.35
CLN3-239ENST00000628023 C11orf72Q8NBR9 251 aa12.87□□□□□ -0.35
CLN3-239ENST00000628023 KCNS1Q96KK3 526 aa12.87□□□□□ -0.35
CLN3-239ENST00000628023 EPPK1P58107 5090 aaKnown RBP12.87□□□□□ -0.35
CLN3-239ENST00000628023 NHLRC2Q8NBF2 726 aa12.86□□□□□ -0.35
CLN3-239ENST00000628023 C11orf52Q96A22 123 aa12.86□□□□□ -0.35
CLN3-239ENST00000628023 ZC2HC1AQ96GY0 325 aa12.86□□□□□ -0.35
CLN3-239ENST00000628023 GAGE12BA1L429 117 aa12.85□□□□□ -0.35
CLN3-239ENST00000628023 GAGE7O76087 117 aa12.85□□□□□ -0.35
CLN3-239ENST00000628023 GAGE12FP0CL80 117 aa12.85□□□□□ -0.35
CLN3-239ENST00000628023 GAGE12GP0CL81 117 aa12.85□□□□□ -0.35
CLN3-239ENST00000628023 GAGE12IP0CL82 117 aa12.85□□□□□ -0.35
CLN3-239ENST00000628023 RPL35P42766 123 aaKnown RBP12.85□□□□□ -0.35
CLN3-239ENST00000628023 DAZ2Q13117 558 aaKnown RBP12.85□□□□□ -0.35
CLN3-239ENST00000628023 TDRG1Q3Y452 100 aa12.85□□□□□ -0.35
CLN3-239ENST00000628023 BAGE2Q86Y30 109 aa12.85□□□□□ -0.35
CLN3-239ENST00000628023 MED9Q9NWA0 146 aa12.85□□□□□ -0.35
CLN3-239ENST00000628023 TRGV1A0A0A0MS02 117 aa12.84□□□□□ -0.35
CLN3-239ENST00000628023 FABP5P3A8MUU1 101 aa12.84□□□□□ -0.35
CLN3-239ENST00000628023 TYMSP04818 313 aa12.84□□□□□ -0.35
CLN3-239ENST00000628023 FAM162BQ5T6X4 162 aa12.84□□□□□ -0.35
CLN3-239ENST00000628023 LYPD6BQ8NI32 183 aa12.84□□□□□ -0.35
CLN3-239ENST00000628023 MDFICQ9P1T7 246 aa12.84□□□□□ -0.35
CLN3-239ENST00000628023 BIRC6Q9NR09 4857 aa12.84□□□□□ -0.35
CLN3-239ENST00000628023 RBFOX3A6NFN3 312 aa12.83□□□□□ -0.36
CLN3-239ENST00000628023 IGLL5B9A064 214 aa12.83□□□□□ -0.36
CLN3-239ENST00000628023 GNRH2O43555 120 aa12.83□□□□□ -0.36
CLN3-239ENST00000628023 Q6ZTI0 123 aa12.83□□□□□ -0.36
CLN3-239ENST00000628023 PCNPQ8WW12 178 aaKnown RBP12.83□□□□□ -0.36
CLN3-239ENST00000628023 DERL1Q9BUN8 251 aa12.83□□□□□ -0.36
CLN3-239ENST00000628023 TRGV2A0A075B6R0 118 aa12.82□□□□□ -0.36
CLN3-239ENST00000628023 SH2D1AO60880 128 aa12.82□□□□□ -0.36
CLN3-239ENST00000628023 ORM1P02763 201 aa12.82□□□□□ -0.36
CLN3-239ENST00000628023 TOR2AQ5JU69 321 aa12.82□□□□□ -0.36
CLN3-239ENST00000628023 COX8CQ7Z4L0 72 aa12.82□□□□□ -0.36
CLN3-239ENST00000628023 EIF5A2Q9GZV4 153 aaKnown RBP12.82□□□□□ -0.36
CLN3-239ENST00000628023 C11orf21Q9P2W6 132 aa12.82□□□□□ -0.36
CLN3-239ENST00000628023 ALMS1Q8TCU4 4167 aa12.82□□□□□ -0.36
CLN3-239ENST00000628023 HYDINQ4G0P3 5121 aa12.82□□□□□ -0.36
CLN3-239ENST00000628023 IGHV3-16A0A0C4DH30 117 aa12.81□□□□□ -0.36
CLN3-239ENST00000628023 ATP5G1P05496 136 aa12.81□□□□□ -0.36
CLN3-239ENST00000628023 GNG4P50150 75 aa12.81□□□□□ -0.36
CLN3-239ENST00000628023 CENPWQ5EE01 88 aa12.81□□□□□ -0.36
CLN3-239ENST00000628023 ZNF506Q5JVG8 444 aa12.81□□□□□ -0.36
CLN3-239ENST00000628023 MRPL16Q9NX20 251 aaKnown RBP12.81□□□□□ -0.36
CLN3-239ENST00000628023 F5H768 121 aa12.8□□□□□ -0.36
CLN3-239ENST00000628023 M0R036 132 aa12.8□□□□□ -0.36
CLN3-239ENST00000628023 SPINK4O60575 86 aa12.8□□□□□ -0.36
CLN3-239ENST00000628023 CRIP1P50238 77 aa12.8□□□□□ -0.36
CLN3-239ENST00000628023 PRR27Q6MZM9 219 aa12.8□□□□□ -0.36
CLN3-239ENST00000628023 LINC00612Q8N6U2 182 aa12.8□□□□□ -0.36
CLN3-239ENST00000628023 SPXQ9BT56 116 aa12.8□□□□□ -0.36
CLN3-239ENST00000628023 B4DEV8 164 aa12.79□□□□□ -0.36
CLN3-239ENST00000628023 MGST1P10620 155 aaKnown RBP12.79□□□□□ -0.36
CLN3-239ENST00000628023 S100A4P26447 101 aaKnown RBP12.79□□□□□ -0.36
CLN3-239ENST00000628023 CEBPGP53567 150 aa12.79□□□□□ -0.36
CLN3-239ENST00000628023 ZNF674Q2M3X9 581 aa12.79□□□□□ -0.36
CLN3-239ENST00000628023 LGALS9BQ3B8N2 356 aa12.79□□□□□ -0.36
CLN3-239ENST00000628023 PLECQ15149 4684 aaKnown RBP12.78□□□□□ -0.36
CLN3-239ENST00000628023 IGHV4-4A0A075B6R2 117 aa12.78□□□□□ -0.36
CLN3-239ENST00000628023 IGKV3D-20A0A0C4DH25 116 aa12.78□□□□□ -0.36
CLN3-239ENST00000628023 RAB19A4D1S5 217 aa12.78□□□□□ -0.36
CLN3-239ENST00000628023 ASIPP42127 132 aa12.78□□□□□ -0.36
CLN3-239ENST00000628023 OR5I1Q13606 314 aa12.78□□□□□ -0.36
CLN3-239ENST00000628023 FAM210AQ96ND0 272 aa12.78□□□□□ -0.36
CLN3-239ENST00000628023 MLST8Q9BVC4 326 aa12.78□□□□□ -0.36
CLN3-239ENST00000628023 TMSB15BA0A087X1C1 80 aa12.77□□□□□ -0.37
CLN3-239ENST00000628023 TMEM250H0YL14 139 aa12.77□□□□□ -0.37
CLN3-239ENST00000628023 M0R2P5 195 aa12.77□□□□□ -0.37
CLN3-239ENST00000628023 TCTAP57738 103 aa12.77□□□□□ -0.37
CLN3-239ENST00000628023 LGALS9CQ6DKI2 356 aa12.77□□□□□ -0.37
CLN3-239ENST00000628023 NDUFAF3Q9BU61 184 aa12.77□□□□□ -0.37
CLN3-239ENST00000628023 KRBOX1C9JBD0 128 aa12.76□□□□□ -0.37
CLN3-239ENST00000628023 RAB14P61106 215 aa12.76□□□□□ -0.37
CLN3-239ENST00000628023 SMIM12Q96EX1 92 aa12.76□□□□□ -0.37
CLN3-239ENST00000628023 FAM210BQ96KR6 192 aa12.76□□□□□ -0.37
CLN3-239ENST00000628023 LINC01559Q495D7 138 aa12.75□□□□□ -0.37
CLN3-239ENST00000628023 TMEM88Q6PEY1 159 aa12.75□□□□□ -0.37
CLN3-239ENST00000628023 DAZAP1Q96EP5 407 aaKnown RBP12.75□□□□□ -0.37
CLN3-239ENST00000628023 PARLQ9H300 379 aa12.75□□□□□ -0.37
CLN3-239ENST00000628023 GRIFINA4D1Z8 144 aa12.74□□□□□ -0.37
CLN3-239ENST00000628023 PGPEP1LA6NFU8 196 aa12.74□□□□□ -0.37
CLN3-239ENST00000628023 C9JCJ5 164 aa12.74□□□□□ -0.37
CLN3-239ENST00000628023 H3BVH4 76 aa12.74□□□□□ -0.37
CLN3-239ENST00000628023 IGHV3-53P01767 116 aa12.74□□□□□ -0.37
CLN3-239ENST00000628023 RNASE3P12724 160 aaKnown RBP12.74□□□□□ -0.37
CLN3-239ENST00000628023 C9orf85Q96MD7 179 aa12.74□□□□□ -0.37
CLN3-239ENST00000628023 C18orf15Q96N68 181 aa12.74□□□□□ -0.37
CLN3-239ENST00000628023 BIN3Q9NQY0 253 aa12.74□□□□□ -0.37
CLN3-239ENST00000628023 TRBV20OR9-2A0A075B6H5 130 aa12.73□□□□□ -0.37
CLN3-239ENST00000628023 IGLV2-8P01709 118 aa12.73□□□□□ -0.37
CLN3-239ENST00000628023 RASL10AQ92737 203 aa12.73□□□□□ -0.37
CLN3-239ENST00000628023 APLNQ9ULZ1 77 aa12.73□□□□□ -0.37
CLN3-239ENST00000628023 RPL19P84098 196 aaKnown RBP12.72□□□□□ -0.37
CLN3-239ENST00000628023 ZNF876PQ49A33 203 aa12.72□□□□□ -0.37
CLN3-239ENST00000628023 NDUFS6O75380 124 aaKnown RBP12.71□□□□□ -0.37
CLN3-239ENST00000628023 HOXA5P20719 270 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms