RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 C20orf202A1L168 122 aa11.94□□□□□ -0.5
CPSF1-213ENST00000620219 HSBP1L1C9JCN9 74 aa11.94□□□□□ -0.5
CPSF1-213ENST00000620219 ZNF56Q15929 161 aa11.94□□□□□ -0.5
CPSF1-213ENST00000620219 ANXA2RQ3ZCQ2 193 aa11.94□□□□□ -0.5
CPSF1-213ENST00000620219 GDF5OSQ5U4N7 250 aa11.94□□□□□ -0.5
CPSF1-213ENST00000620219 D6R8Y8 96 aa11.93□□□□□ -0.5
CPSF1-213ENST00000620219 OR11H12B2RN74 326 aa11.93□□□□□ -0.5
CPSF1-213ENST00000620219 MRPS12O15235 138 aaKnown RBP11.93□□□□□ -0.5
CPSF1-213ENST00000620219 BTF3P20290 206 aaKnown RBP11.93□□□□□ -0.5
CPSF1-213ENST00000620219 CRIP1P50238 77 aa11.93□□□□□ -0.5
CPSF1-213ENST00000620219 ATP5L2Q7Z4Y8 100 aa11.93□□□□□ -0.5
CPSF1-213ENST00000620219 KIR3DS1Q14943 382 aa11.92□□□□□ -0.5
CPSF1-213ENST00000620219 CD300EQ496F6 205 aaPredicted RBP11.92□□□□□ -0.5
CPSF1-213ENST00000620219 C18orf32Q8TCD1 76 aa11.92□□□□□ -0.5
CPSF1-213ENST00000620219 ATP6V0BQ99437 205 aa11.92□□□□□ -0.5
CPSF1-213ENST00000620219 MSRB1Q9NZV6 116 aa11.92□□□□□ -0.5
CPSF1-213ENST00000620219 GNRH2O43555 120 aa11.92□□□□□ -0.5
CPSF1-213ENST00000620219 OR5AL1P0C617 328 aa11.92□□□□□ -0.5
CPSF1-213ENST00000620219 NUTF2P61970 127 aaKnown RBP11.92□□□□□ -0.5
CPSF1-213ENST00000620219 ORMDL3Q8N138 153 aa11.92□□□□□ -0.5
CPSF1-213ENST00000620219 C14orf178Q8N769 122 aaPredicted RBP11.92□□□□□ -0.5
CPSF1-213ENST00000620219 K7EMT4 169 aa11.92□□□□□ -0.5
CPSF1-213ENST00000620219 LEPP41159 167 aa11.92□□□□□ -0.5
CPSF1-213ENST00000620219 MCRIP2Q9BUT9 160 aaKnown RBP11.92□□□□□ -0.5
CPSF1-213ENST00000620219 AP5S1Q9NUS5 200 aa11.92□□□□□ -0.5
CPSF1-213ENST00000620219 TMEM89A2RUT3 159 aa11.92□□□□□ -0.5
CPSF1-213ENST00000620219 OR10AG1Q8NH19 301 aa11.92□□□□□ -0.5
CPSF1-213ENST00000620219 PMCHL2Q9BQD1 86 aa11.92□□□□□ -0.5
CPSF1-213ENST00000620219 Q6ZQT7 251 aa11.91□□□□□ -0.5
CPSF1-213ENST00000620219 VAMP8Q9BV40 100 aa11.91□□□□□ -0.5
CPSF1-213ENST00000620219 IGHV3-73A0A0B4J1V6 119 aa11.91□□□□□ -0.5
CPSF1-213ENST00000620219 TRAV8-2A0A0B4J237 113 aa11.91□□□□□ -0.5
CPSF1-213ENST00000620219 C19orf71A6NCJ1 209 aa11.91□□□□□ -0.5
CPSF1-213ENST00000620219 KCNS1Q96KK3 526 aa11.91□□□□□ -0.5
CPSF1-213ENST00000620219 C18orf15Q96N68 181 aa11.91□□□□□ -0.5
CPSF1-213ENST00000620219 PRSS1P07477 247 aa11.91□□□□□ -0.5
CPSF1-213ENST00000620219 ZNF124Q15973 351 aa11.91□□□□□ -0.5
CPSF1-213ENST00000620219 NIT1Q86X76 327 aa11.91□□□□□ -0.5
CPSF1-213ENST00000620219 KRTAP1-3Q8IUG1 177 aa11.91□□□□□ -0.5
CPSF1-213ENST00000620219 C4orf3Q8WVX3 66 aa11.91□□□□□ -0.5
CPSF1-213ENST00000620219 LEPROTL1O95214 131 aa11.9□□□□□ -0.5
CPSF1-213ENST00000620219 MAP1LC3AQ9H492 121 aa11.9□□□□□ -0.5
CPSF1-213ENST00000620219 ZNF324O75467 553 aaPredicted RBP11.9□□□□□ -0.5
CPSF1-213ENST00000620219 CRIP2P52943 208 aaPredicted RBP11.9□□□□□ -0.5
CPSF1-213ENST00000620219 CT83Q5H943 113 aa11.9□□□□□ -0.5
CPSF1-213ENST00000620219 REC114Q7Z4M0 266 aa11.9□□□□□ -0.5
CPSF1-213ENST00000620219 TENM4Q6N022 2769 aa11.9□□□□□ -0.5
CPSF1-213ENST00000620219 A8MWP6 167 aa11.9□□□□□ -0.5
CPSF1-213ENST00000620219 A0A087WWL8 130 aa11.9□□□□□ -0.51
CPSF1-213ENST00000620219 A0A087X0K7 114 aa11.9□□□□□ -0.51
CPSF1-213ENST00000620219 JOSD1Q15040 202 aaPredicted RBP11.9□□□□□ -0.51
CPSF1-213ENST00000620219 SYT8Q8NBV8 401 aa11.9□□□□□ -0.51
CPSF1-213ENST00000620219 GFRA4Q9GZZ7 299 aa11.89□□□□□ -0.51
CPSF1-213ENST00000620219 CDKN1BP46527 198 aa11.88□□□□□ -0.51
CPSF1-213ENST00000620219 ALKBH7Q9BT30 221 aaPredicted RBP11.88□□□□□ -0.51
CPSF1-213ENST00000620219 MAST4O15021 2626 aa11.88□□□□□ -0.51
CPSF1-213ENST00000620219 HILS1P60008 231 aa11.88□□□□□ -0.51
CPSF1-213ENST00000620219 TRAV26-2A0A0B4J265 109 aa11.88□□□□□ -0.51
CPSF1-213ENST00000620219 Q6ZWC4 215 aa11.88□□□□□ -0.51
CPSF1-213ENST00000620219 C3orf56Q8N813 242 aa11.87□□□□□ -0.51
CPSF1-213ENST00000620219 LOC102724200A0A096LPH7 203 aaPredicted RBP11.87□□□□□ -0.51
CPSF1-213ENST00000620219 A0A1B0GW15 77 aa11.87□□□□□ -0.51
CPSF1-213ENST00000620219 BAHCC1Q9P281 2608 aa11.86□□□□□ -0.51
CPSF1-213ENST00000620219 C7orf71A4D174 169 aa11.86□□□□□ -0.51
CPSF1-213ENST00000620219 RNASE1P07998 156 aaKnown RBP11.86□□□□□ -0.51
CPSF1-213ENST00000620219 RBAKDNA6NC62 111 aa11.86□□□□□ -0.51
CPSF1-213ENST00000620219 LINC00614P0C842 121 aa11.86□□□□□ -0.51
CPSF1-213ENST00000620219 OR10J3Q5JRS4 329 aa11.86□□□□□ -0.51
CPSF1-213ENST00000620219 MRPL53Q96EL3 112 aaKnown RBP11.86□□□□□ -0.51
CPSF1-213ENST00000620219 AP1S3Q96PC3 154 aa11.86□□□□□ -0.51
CPSF1-213ENST00000620219 TP53TG3Q9ULZ0 132 aa11.86□□□□□ -0.51
CPSF1-213ENST00000620219 MAP1LC3CQ9BXW4 147 aa11.86□□□□□ -0.51
CPSF1-213ENST00000620219 SETXQ7Z333 2677 aaKnown RBP11.86□□□□□ -0.51
CPSF1-213ENST00000620219 FAM231BA6NCW3 169 aa11.86□□□□□ -0.51
CPSF1-213ENST00000620219 C9orf47Q6ZRZ4 202 aa11.86□□□□□ -0.51
CPSF1-213ENST00000620219 ZNF256Q9Y2P7 627 aaPredicted RBP11.86□□□□□ -0.51
CPSF1-213ENST00000620219 CR1P17927 2039 aa11.85□□□□□ -0.51
CPSF1-213ENST00000620219 RIPPLY3P57055 190 aa11.85□□□□□ -0.51
CPSF1-213ENST00000620219 RRN3P1Q2M238 152 aa11.85□□□□□ -0.51
CPSF1-213ENST00000620219 RASL11AQ6T310 242 aa11.85□□□□□ -0.51
CPSF1-213ENST00000620219 FSHBP01225 129 aa11.85□□□□□ -0.51
CPSF1-213ENST00000620219 FCER1GP30273 86 aa11.85□□□□□ -0.51
CPSF1-213ENST00000620219 Q0VG73 95 aa11.84□□□□□ -0.51
CPSF1-213ENST00000620219 U3KQE9 123 aa11.84□□□□□ -0.51
CPSF1-213ENST00000620219 CUBNO60494 3623 aa11.84□□□□□ -0.51
CPSF1-213ENST00000620219 NUDT3O95989 172 aa11.84□□□□□ -0.51
CPSF1-213ENST00000620219 COA6Q5JTJ3 125 aaKnown RBP11.84□□□□□ -0.51
CPSF1-213ENST00000620219 GTSCR1Q86UQ5 136 aa11.84□□□□□ -0.51
CPSF1-213ENST00000620219 PKIAP61925 76 aa11.84□□□□□ -0.51
CPSF1-213ENST00000620219 KLF5Q13887 457 aaPredicted RBP11.84□□□□□ -0.51
CPSF1-213ENST00000620219 CFHR3Q02985 330 aa11.84□□□□□ -0.51
CPSF1-213ENST00000620219 ZNF876PQ49A33 203 aa11.84□□□□□ -0.51
CPSF1-213ENST00000620219 IFI27P40305 119 aaPredicted RBP11.83□□□□□ -0.52
CPSF1-213ENST00000620219 C19orf54Q5BKX5 351 aa11.83□□□□□ -0.52
CPSF1-213ENST00000620219 C3orf79P0CE67 100 aa11.83□□□□□ -0.52
CPSF1-213ENST00000620219 GATA1P15976 413 aaPredicted RBP11.83□□□□□ -0.52
CPSF1-213ENST00000620219 FAM104BQ5XKR9 115 aa11.83□□□□□ -0.52
CPSF1-213ENST00000620219 IGHV3-53P01767 116 aa11.83□□□□□ -0.52
CPSF1-213ENST00000620219 MRPL51Q4U2R6 128 aaKnown RBP11.83□□□□□ -0.52
CPSF1-213ENST00000620219 IGKV3D-20A0A0C4DH25 116 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms