RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 TRAV21A0A0B4J279 112 aa16.72■□□□□ 0.27
PTPRF-216ENST00000617451 EIF3GO75821 320 aaKnown RBP eCLIP16.72■□□□□ 0.27
PTPRF-216ENST00000617451 LINC01556Q5JQF7 62 aa16.72■□□□□ 0.27
PTPRF-216ENST00000617451 LINC00299Q6ZSB3 139 aa16.72■□□□□ 0.27
PTPRF-216ENST00000617451 NHLRC2Q8NBF2 726 aa16.72■□□□□ 0.27
PTPRF-216ENST00000617451 ENKURQ8TC29 256 aa16.72■□□□□ 0.27
PTPRF-216ENST00000617451 PPP1R1CQ8WVI7 109 aa16.72■□□□□ 0.27
PTPRF-216ENST00000617451 TVP23CQ96ET8 276 aa16.72■□□□□ 0.27
PTPRF-216ENST00000617451 MBD2Q9UBB5 411 aa16.72■□□□□ 0.27
PTPRF-216ENST00000617451 HSPB11Q9Y547 144 aa16.72■□□□□ 0.27
PTPRF-216ENST00000617451 IGLV5-52A0A0A0MRZ9 124 aa16.71■□□□□ 0.27
PTPRF-216ENST00000617451 PSCAO43653 123 aa16.71■□□□□ 0.27
PTPRF-216ENST00000617451 TYMSP04818 313 aa16.71■□□□□ 0.27
PTPRF-216ENST00000617451 H2BFSP57053 126 aa16.71■□□□□ 0.27
PTPRF-216ENST00000617451 GOLT1AQ6ZVE7 132 aa16.71■□□□□ 0.27
PTPRF-216ENST00000617451 ARL6IP6Q8N6S5 226 aa16.71■□□□□ 0.27
PTPRF-216ENST00000617451 SCGB1C1Q8TD33 95 aa16.71■□□□□ 0.27
PTPRF-216ENST00000617451 NTN5Q8WTR8 489 aaPredicted RBP16.71■□□□□ 0.27
PTPRF-216ENST00000617451 RPH3ALQ9UNE2 315 aa16.71■□□□□ 0.27
PTPRF-216ENST00000617451 IBA57-AS1B1ANH7 110 aa16.7■□□□□ 0.26
PTPRF-216ENST00000617451 FAM229AH3BQW9 127 aa16.7■□□□□ 0.26
PTPRF-216ENST00000617451 PPT1P50897 306 aa16.7■□□□□ 0.26
PTPRF-216ENST00000617451 HAMPP81172 84 aa16.7■□□□□ 0.26
PTPRF-216ENST00000617451 FAM74A1Q5RGS3 127 aa16.7■□□□□ 0.26
PTPRF-216ENST00000617451 TMEM70Q9BUB7 260 aa16.7■□□□□ 0.26
PTPRF-216ENST00000617451 SDF2L1Q9HCN8 221 aa16.7■□□□□ 0.26
PTPRF-216ENST00000617451 KCNS1Q96KK3 526 aa16.69■□□□□ 0.26
PTPRF-216ENST00000617451 TREM1Q9NP99 234 aa16.69■□□□□ 0.26
PTPRF-216ENST00000617451 TRAV8-1A0A0A6YYK1 113 aa16.68■□□□□ 0.26
PTPRF-216ENST00000617451 F6UZH7 168 aa16.68■□□□□ 0.26
PTPRF-216ENST00000617451 PFN1P07737 140 aaKnown RBP16.68■□□□□ 0.26
PTPRF-216ENST00000617451 S100ZQ8WXG8 99 aa16.68■□□□□ 0.26
PTPRF-216ENST00000617451 SMIM3Q9BZL3 60 aa16.68■□□□□ 0.26
PTPRF-216ENST00000617451 FBLL1A6NHQ2 334 aaKnown RBP16.67■□□□□ 0.26
PTPRF-216ENST00000617451 MPC2O95563 127 aa16.67■□□□□ 0.26
PTPRF-216ENST00000617451 PQLC2Q6ZP29 291 aa16.67■□□□□ 0.26
PTPRF-216ENST00000617451 SLC25A29Q8N8R3 303 aa16.67■□□□□ 0.26
PTPRF-216ENST00000617451 ASB13Q8WXK3 278 aa16.67■□□□□ 0.26
PTPRF-216ENST00000617451 BOLA1Q9Y3E2 137 aa16.67■□□□□ 0.26
PTPRF-216ENST00000617451 TRAV8-6A0A0B4J262 113 aa16.66■□□□□ 0.26
PTPRF-216ENST00000617451 RPL12P30050 165 aaKnown RBP16.66■□□□□ 0.26
PTPRF-216ENST00000617451 Q8N814 137 aa16.66■□□□□ 0.26
PTPRF-216ENST00000617451 INMT-MINDY4F8WBC2 141 aa16.65■□□□□ 0.26
PTPRF-216ENST00000617451 ZNF876PQ49A33 203 aa16.65■□□□□ 0.26
PTPRF-216ENST00000617451 Q6ZSN1 163 aa16.65■□□□□ 0.26
PTPRF-216ENST00000617451 CIDEAO60543 219 aa16.64■□□□□ 0.25
PTPRF-216ENST00000617451 UPK1BO75841 260 aa16.64■□□□□ 0.25
PTPRF-216ENST00000617451 PET100P0DJ07 73 aa16.64■□□□□ 0.25
PTPRF-216ENST00000617451 GNG5P63218 68 aa16.64■□□□□ 0.25
PTPRF-216ENST00000617451 ACOT6Q3I5F7 207 aaPredicted RBP16.64■□□□□ 0.25
PTPRF-216ENST00000617451 OR10J3Q5JRS4 329 aa16.64■□□□□ 0.25
PTPRF-216ENST00000617451 CFAP126Q5VTH2 177 aa16.64■□□□□ 0.25
PTPRF-216ENST00000617451 PRADC1Q9BSG0 188 aa16.64■□□□□ 0.25
PTPRF-216ENST00000617451 Q9HAA7 133 aa16.64■□□□□ 0.25
PTPRF-216ENST00000617451 WFDC1Q9HC57 220 aa16.64■□□□□ 0.25
PTPRF-216ENST00000617451 TRBV6-4A0A1B0GX49 114 aa16.63■□□□□ 0.25
PTPRF-216ENST00000617451 A0A1W2PPV4 95 aa16.63■□□□□ 0.25
PTPRF-216ENST00000617451 RS1O15537 224 aa16.63■□□□□ 0.25
PTPRF-216ENST00000617451 RHOHQ15669 191 aa16.63■□□□□ 0.25
PTPRF-216ENST00000617451 DPPA3Q6W0C5 159 aa16.63■□□□□ 0.25
PTPRF-216ENST00000617451 IFITM3Q01628 133 aa16.62■□□□□ 0.25
PTPRF-216ENST00000617451 LELP1Q5T871 98 aa16.62■□□□□ 0.25
PTPRF-216ENST00000617451 MARVELD1Q9BSK0 173 aa16.62■□□□□ 0.25
PTPRF-216ENST00000617451 C11orf21Q9P2W6 132 aa16.62■□□□□ 0.25
PTPRF-216ENST00000617451 RAB2AP61019 212 aa16.61■□□□□ 0.25
PTPRF-216ENST00000617451 SGK494Q96LW2 274 aa16.61■□□□□ 0.25
PTPRF-216ENST00000617451 FAM30AQ9NZY2 134 aa16.61■□□□□ 0.25
PTPRF-216ENST00000617451 IGHV3-73A0A0B4J1V6 119 aa16.6■□□□□ 0.25
PTPRF-216ENST00000617451 HMGB3O15347 200 aaKnown RBP16.6■□□□□ 0.25
PTPRF-216ENST00000617451 IGHV3-30P01768 117 aa16.6■□□□□ 0.25
PTPRF-216ENST00000617451 IGHV3-33P01772 117 aa16.6■□□□□ 0.25
PTPRF-216ENST00000617451 IGHV3-30-3P0DP02 117 aa16.6■□□□□ 0.25
PTPRF-216ENST00000617451 IGHV3-30-5P0DP03 117 aa16.6■□□□□ 0.25
PTPRF-216ENST00000617451 ZNF80P51504 273 aaPredicted RBP16.6■□□□□ 0.25
PTPRF-216ENST00000617451 NDFIP1Q9BT67 221 aa16.6■□□□□ 0.25
PTPRF-216ENST00000617451 SERTM2A0A1B0GWG4 89 aa16.59■□□□□ 0.25
PTPRF-216ENST00000617451 C9orf85Q96MD7 179 aa16.59■□□□□ 0.25
PTPRF-216ENST00000617451 GTSF1LQ9H1H1 148 aa16.59■□□□□ 0.25
PTPRF-216ENST00000617451 TAAR5O14804 337 aa16.58■□□□□ 0.24
PTPRF-216ENST00000617451 SSNA1O43805 119 aa16.58■□□□□ 0.24
PTPRF-216ENST00000617451 C1QBP02746 253 aa16.58■□□□□ 0.24
PTPRF-216ENST00000617451 LAGE3Q14657 143 aa16.58■□□□□ 0.24
PTPRF-216ENST00000617451 OR10G9Q8NGN4 311 aa16.58■□□□□ 0.24
PTPRF-216ENST00000617451 OR10G7Q8NGN6 311 aa16.58■□□□□ 0.24
PTPRF-216ENST00000617451 PTH2Q96A98 100 aa16.58■□□□□ 0.24
PTPRF-216ENST00000617451 ARL14EPLP0DKL9 152 aa16.57■□□□□ 0.24
PTPRF-216ENST00000617451 ATP6V0E2Q8NHE4 81 aa16.57■□□□□ 0.24
PTPRF-216ENST00000617451 PGPEP1LA6NFU8 196 aa16.56■□□□□ 0.24
PTPRF-216ENST00000617451 GCGP01275 180 aa16.56■□□□□ 0.24
PTPRF-216ENST00000617451 TCRAP04437 139 aa16.56■□□□□ 0.24
PTPRF-216ENST00000617451 ZNF506Q5JVG8 444 aa16.56■□□□□ 0.24
PTPRF-216ENST00000617451 C5orf17Q8NAS9 161 aa16.56■□□□□ 0.24
PTPRF-216ENST00000617451 TM2D2Q9BX73 214 aa16.56■□□□□ 0.24
PTPRF-216ENST00000617451 MGST1P10620 155 aaKnown RBP16.55■□□□□ 0.24
PTPRF-216ENST00000617451 TMEM75Q8N9X5 138 aa16.55■□□□□ 0.24
PTPRF-216ENST00000617451 PSG8Q9UQ74 426 aa16.55■□□□□ 0.24
PTPRF-216ENST00000617451 STAG3L2P0CL84 134 aa16.54■□□□□ 0.24
PTPRF-216ENST00000617451 STAG3L3P0CL85 134 aa16.54■□□□□ 0.24
PTPRF-216ENST00000617451 RNASE3P12724 160 aaKnown RBP16.54■□□□□ 0.24
PTPRF-216ENST00000617451 WFDC2Q14508 124 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms