RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 HIST1H2BBP33778 126 aa7.44□□□□□ -1.22
UPF1-213ENST00000601981 FOXA3P55318 350 aaPredicted RBP7.44□□□□□ -1.22
UPF1-213ENST00000601981 HIST1H2BDP58876 126 aa7.44□□□□□ -1.22
UPF1-213ENST00000601981 RPS20P60866 119 aaKnown RBP7.44□□□□□ -1.22
UPF1-213ENST00000601981 HIST1H2BCP62807 126 aa7.44□□□□□ -1.22
UPF1-213ENST00000601981 HIST2H2BEQ16778 126 aa7.44□□□□□ -1.22
UPF1-213ENST00000601981 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.44□□□□□ -1.22
UPF1-213ENST00000601981 KIR2DL5AQ8N109 375 aa7.44□□□□□ -1.22
UPF1-213ENST00000601981 OR8A1Q8NGG7 326 aa7.44□□□□□ -1.22
UPF1-213ENST00000601981 KIR2DL5BQ8NHK3 375 aa7.44□□□□□ -1.22
UPF1-213ENST00000601981 GTSF1Q8WW33 167 aa7.44□□□□□ -1.22
UPF1-213ENST00000601981 HIST1H2BHQ93079 126 aa7.44□□□□□ -1.22
UPF1-213ENST00000601981 HIST1H2BNQ99877 126 aa7.44□□□□□ -1.22
UPF1-213ENST00000601981 HIST1H2BMQ99879 126 aa7.44□□□□□ -1.22
UPF1-213ENST00000601981 ZMAT4Q9H898 229 aa7.44□□□□□ -1.22
UPF1-213ENST00000601981 TRAPPC1Q9Y5R8 145 aa7.44□□□□□ -1.22
UPF1-213ENST00000601981 A0A1B0GXF2 115 aa7.43□□□□□ -1.22
UPF1-213ENST00000601981 TMEM189A5PLL7 270 aa7.43□□□□□ -1.22
UPF1-213ENST00000601981 C5orf52A6NGY3 159 aa7.43□□□□□ -1.22
UPF1-213ENST00000601981 FABP5P3A8MUU1 101 aa7.43□□□□□ -1.22
UPF1-213ENST00000601981 UBE2CO00762 179 aa7.43□□□□□ -1.22
UPF1-213ENST00000601981 DUSP14O95147 198 aaKnown RBP7.43□□□□□ -1.22
UPF1-213ENST00000601981 HLA-DQA1P01909 254 aa7.43□□□□□ -1.22
UPF1-213ENST00000601981 NHLRC4P0CG21 123 aaPredicted RBP7.43□□□□□ -1.22
UPF1-213ENST00000601981 ZNF80P51504 273 aaPredicted RBP7.43□□□□□ -1.22
UPF1-213ENST00000601981 HIST1H1AQ02539 215 aaPredicted RBP7.43□□□□□ -1.22
UPF1-213ENST00000601981 FABP9Q0Z7S8 132 aa7.43□□□□□ -1.22
UPF1-213ENST00000601981 MRPL54Q6P161 138 aaKnown RBP7.43□□□□□ -1.22
UPF1-213ENST00000601981 MORN3Q6PF18 240 aaPredicted RBP7.43□□□□□ -1.22
UPF1-213ENST00000601981 TMEM136Q6ZRR5 245 aa7.43□□□□□ -1.22
UPF1-213ENST00000601981 FAM19A4Q96LR4 140 aa7.43□□□□□ -1.22
UPF1-213ENST00000601981 KNCNA6PVL3 124 aa7.42□□□□□ -1.22
UPF1-213ENST00000601981 SNURFLB1AK76 121 aa7.42□□□□□ -1.22
UPF1-213ENST00000601981 HLA-DRB4P13762 266 aa7.42□□□□□ -1.22
UPF1-213ENST00000601981 CRISP2P16562 243 aa7.42□□□□□ -1.22
UPF1-213ENST00000601981 RPL35AP18077 110 aaKnown RBP7.42□□□□□ -1.22
UPF1-213ENST00000601981 ZNF124Q15973 351 aa7.42□□□□□ -1.22
UPF1-213ENST00000601981 LINC01559Q495D7 138 aa7.42□□□□□ -1.22
UPF1-213ENST00000601981 ODF3Q96PU9 254 aa7.42□□□□□ -1.22
UPF1-213ENST00000601981 SPATA25Q9BR10 227 aa7.42□□□□□ -1.22
UPF1-213ENST00000601981 C1QTNF4Q9BXJ3 329 aa7.42□□□□□ -1.22
UPF1-213ENST00000601981 MRPL18Q9H0U6 180 aaKnown RBP7.42□□□□□ -1.22
UPF1-213ENST00000601981 HLA-DRB4X5D2U9 266 aa7.42□□□□□ -1.22
UPF1-213ENST00000601981 A0A0J9YX75 114 aa7.41□□□□□ -1.22
UPF1-213ENST00000601981 A0A1B0GW15 77 aa7.41□□□□□ -1.22
UPF1-213ENST00000601981 RBMY1BA6NDE4 496 aaKnown RBP7.41□□□□□ -1.22
UPF1-213ENST00000601981 RBMY1EA6NEQ0 496 aaKnown RBP7.41□□□□□ -1.22
UPF1-213ENST00000601981 SPINK4O60575 86 aa7.41□□□□□ -1.22
UPF1-213ENST00000601981 RBMY1DP0C7P1 496 aaKnown RBP7.41□□□□□ -1.22
UPF1-213ENST00000601981 GZMBP10144 247 aa7.41□□□□□ -1.22
UPF1-213ENST00000601981 SNRPEP62304 92 aaKnown RBP7.41□□□□□ -1.22
UPF1-213ENST00000601981 HBBP68871 147 aa7.41□□□□□ -1.22
UPF1-213ENST00000601981 TRPT1Q86TN4 253 aaKnown RBP7.41□□□□□ -1.22
UPF1-213ENST00000601981 ZFAND2AQ8N6M9 145 aa7.41□□□□□ -1.22
UPF1-213ENST00000601981 PGLYRP4Q96LB8 373 aa7.41□□□□□ -1.22
UPF1-213ENST00000601981 CSTL1Q9H114 145 aa7.41□□□□□ -1.22
UPF1-213ENST00000601981 A0A1B0GUT8 65 aa7.4□□□□□ -1.22
UPF1-213ENST00000601981 F6UB75 175 aa7.4□□□□□ -1.22
UPF1-213ENST00000601981 H3BMM0 161 aa7.4□□□□□ -1.22
UPF1-213ENST00000601981 S100A8P05109 93 aa7.4□□□□□ -1.22
UPF1-213ENST00000601981 ZNF705DP0CH99 300 aaPredicted RBP7.4□□□□□ -1.22
UPF1-213ENST00000601981 ZNF705BP0CI00 300 aaPredicted RBP7.4□□□□□ -1.22
UPF1-213ENST00000601981 CTRLP40313 264 aa7.4□□□□□ -1.22
UPF1-213ENST00000601981 NDUFA6P56556 154 aa7.4□□□□□ -1.22
UPF1-213ENST00000601981 RIGQ13278 110 aa7.4□□□□□ -1.22
UPF1-213ENST00000601981 COA6Q5JTJ3 125 aaKnown RBP7.4□□□□□ -1.22
UPF1-213ENST00000601981 SBSPONQ8IVN8 264 aa7.4□□□□□ -1.22
UPF1-213ENST00000601981 GATD1Q8NB37 220 aa7.4□□□□□ -1.22
UPF1-213ENST00000601981 BORCS7Q96B45 105 aa7.4□□□□□ -1.22
UPF1-213ENST00000601981 CLUHP3Q96NS8 147 aa7.4□□□□□ -1.22
UPF1-213ENST00000601981 TMSB15BA0A087X1C1 80 aa7.39□□□□□ -1.23
UPF1-213ENST00000601981 TRAV21A0A0B4J279 112 aa7.39□□□□□ -1.23
UPF1-213ENST00000601981 AMBPP02760 352 aa7.39□□□□□ -1.23
UPF1-213ENST00000601981 ORM1P02763 201 aa7.39□□□□□ -1.23
UPF1-213ENST00000601981 IGLC6P0CF74 106 aa7.39□□□□□ -1.23
UPF1-213ENST00000601981 HOXA5P20719 270 aa7.39□□□□□ -1.23
UPF1-213ENST00000601981 LEPP41159 167 aa7.39□□□□□ -1.23
UPF1-213ENST00000601981 DEFB1P60022 68 aa7.39□□□□□ -1.23
UPF1-213ENST00000601981 RAB4BP61018 213 aa7.39□□□□□ -1.23
UPF1-213ENST00000601981 PRR9Q5T870 116 aa7.39□□□□□ -1.23
UPF1-213ENST00000601981 Q6ZWC4 215 aa7.39□□□□□ -1.23
UPF1-213ENST00000601981 A8MTW9 85 aa7.38□□□□□ -1.23
UPF1-213ENST00000601981 KLLNB2CW77 178 aa7.38□□□□□ -1.23
UPF1-213ENST00000601981 IGKV3-20P01619 116 aa7.38□□□□□ -1.23
UPF1-213ENST00000601981 APCSP02743 223 aa7.38□□□□□ -1.23
UPF1-213ENST00000601981 ARMS2P0C7Q2 107 aa7.38□□□□□ -1.23
UPF1-213ENST00000601981 TSPOP30536 169 aa7.38□□□□□ -1.23
UPF1-213ENST00000601981 CAMPP49913 170 aa7.38□□□□□ -1.23
UPF1-213ENST00000601981 GDF5OSQ5U4N7 250 aa7.38□□□□□ -1.23
UPF1-213ENST00000601981 FER1L6-AS1Q8NA97 138 aa7.38□□□□□ -1.23
UPF1-213ENST00000601981 RCHY1Q96PM5 261 aa7.38□□□□□ -1.23
UPF1-213ENST00000601981 TM2D3Q9BRN9 247 aa7.38□□□□□ -1.23
UPF1-213ENST00000601981 C11orf21Q9P2W6 132 aa7.38□□□□□ -1.23
UPF1-213ENST00000601981 TP53TG1Q9Y2A0 90 aa7.38□□□□□ -1.23
UPF1-213ENST00000601981 KMT2CQ8NEZ4 4911 aaKnown RBP7.38□□□□□ -1.23
UPF1-213ENST00000601981 IGKV3D-20A0A0C4DH25 116 aa7.37□□□□□ -1.23
UPF1-213ENST00000601981 F2Z2F3 143 aa7.37□□□□□ -1.23
UPF1-213ENST00000601981 GPX1P07203 203 aa7.37□□□□□ -1.23
UPF1-213ENST00000601981 SLAQ13239 276 aa7.37□□□□□ -1.23
UPF1-213ENST00000601981 DEFB135Q30KP9 77 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms