RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 HLA-DRB4P13762 266 aa14.11□□□□□ -0.15
UPF1-210ENST00000600689 PSMB2P49721 201 aa14.11□□□□□ -0.15
UPF1-210ENST00000600689 ADORA2A-AS1P86434 159 aa14.11□□□□□ -0.15
UPF1-210ENST00000600689 ZNF672Q499Z4 452 aaPredicted RBP14.11□□□□□ -0.15
UPF1-210ENST00000600689 GLMPQ8WWB7 406 aa14.11□□□□□ -0.15
UPF1-210ENST00000600689 SCGB3A1Q96QR1 104 aa14.11□□□□□ -0.15
UPF1-210ENST00000600689 HLA-DRB4X5D2U9 266 aa14.11□□□□□ -0.15
UPF1-210ENST00000600689 NDUFS8O00217 210 aa14.1□□□□□ -0.15
UPF1-210ENST00000600689 MGPP08493 103 aa14.1□□□□□ -0.15
UPF1-210ENST00000600689 CEACAM3P40198 252 aa14.1□□□□□ -0.15
UPF1-210ENST00000600689 CKS1BP61024 79 aa14.1□□□□□ -0.15
UPF1-210ENST00000600689 RRN3P1Q2M238 152 aa14.1□□□□□ -0.15
UPF1-210ENST00000600689 KLHL30-AS1Q8NEE0 82 aa14.1□□□□□ -0.15
UPF1-210ENST00000600689 ATP6V0BQ99437 205 aa14.1□□□□□ -0.15
UPF1-210ENST00000600689 SRSF9Q13242 221 aaKnown RBP eCLIP14.1□□□□□ -0.15
UPF1-210ENST00000600689 RPL39LQ96EH5 51 aaKnown RBP14.1□□□□□ -0.15
UPF1-210ENST00000600689 A0A087WX48 190 aa14.09□□□□□ -0.15
UPF1-210ENST00000600689 LINC00527Q9UJ94 153 aa14.09□□□□□ -0.15
UPF1-210ENST00000600689 IGLV2-18A0A075B6J9 118 aa14.09□□□□□ -0.15
UPF1-210ENST00000600689 LINC01549A6NIU2 74 aa14.09□□□□□ -0.15
UPF1-210ENST00000600689 TMEM78Q5T7P6 136 aa14.09□□□□□ -0.15
UPF1-210ENST00000600689 A0A1B0GV72 72 aa14.09□□□□□ -0.15
UPF1-210ENST00000600689 LINC01548A6NM66 108 aa14.09□□□□□ -0.15
UPF1-210ENST00000600689 SYT8Q8NBV8 401 aa14.09□□□□□ -0.15
UPF1-210ENST00000600689 ZFP2Q6ZN57 461 aa14.08□□□□□ -0.16
UPF1-210ENST00000600689 NRACQ8N912 160 aa14.08□□□□□ -0.16
UPF1-210ENST00000600689 G3V318 75 aa14.07□□□□□ -0.16
UPF1-210ENST00000600689 HOXA3O43365 443 aaPredicted RBP14.07□□□□□ -0.16
UPF1-210ENST00000600689 SRSF1Q07955 248 aaKnown RBP eCLIP14.07□□□□□ -0.16
UPF1-210ENST00000600689 C14orf178Q8N769 122 aaPredicted RBP14.07□□□□□ -0.16
UPF1-210ENST00000600689 SMPXQ9UHP9 88 aa14.07□□□□□ -0.16
UPF1-210ENST00000600689 PLEKHB2Q96CS7 222 aa14.07□□□□□ -0.16
UPF1-210ENST00000600689 KLRB1Q12918 225 aa14.06□□□□□ -0.16
UPF1-210ENST00000600689 LINC01559Q495D7 138 aa14.06□□□□□ -0.16
UPF1-210ENST00000600689 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa14.06□□□□□ -0.16
UPF1-210ENST00000600689 ZNF815PA8K554 130 aa14.06□□□□□ -0.16
UPF1-210ENST00000600689 S100A4P26447 101 aaKnown RBP14.06□□□□□ -0.16
UPF1-210ENST00000600689 MYMXA0A1B0GTQ4 84 aa14.06□□□□□ -0.16
UPF1-210ENST00000600689 SLC25A16P16260 332 aa14.05□□□□□ -0.16
UPF1-210ENST00000600689 RNF5Q99942 180 aa14.05□□□□□ -0.16
UPF1-210ENST00000600689 PRADC1Q9BSG0 188 aa14.05□□□□□ -0.16
UPF1-210ENST00000600689 HIVEP3Q5T1R4 2406 aa14.05□□□□□ -0.16
UPF1-210ENST00000600689 TRAV26-1A0A087WT03 109 aa14.05□□□□□ -0.16
UPF1-210ENST00000600689 FBXL19-AS1Q494R0 122 aa14.05□□□□□ -0.16
UPF1-210ENST00000600689 IGHV7-4-1A0A0J9YVY3 117 aa14.04□□□□□ -0.16
UPF1-210ENST00000600689 F8VRH5 84 aa14.04□□□□□ -0.16
UPF1-210ENST00000600689 PRR9Q5T870 116 aa14.04□□□□□ -0.16
UPF1-210ENST00000600689 PIFOQ8TCI5 191 aa14.04□□□□□ -0.16
UPF1-210ENST00000600689 SRSF8Q9BRL6 282 aaKnown RBP14.04□□□□□ -0.16
UPF1-210ENST00000600689 TRBV7-3A0A075B6L6 115 aa14.04□□□□□ -0.16
UPF1-210ENST00000600689 H7C1H1 209 aa14.04□□□□□ -0.16
UPF1-210ENST00000600689 BUB3O43684 328 aa14.04□□□□□ -0.16
UPF1-210ENST00000600689 LGALS1P09382 135 aaKnown RBP14.04□□□□□ -0.16
UPF1-210ENST00000600689 LY6DQ14210 128 aa14.04□□□□□ -0.16
UPF1-210ENST00000600689 MORN3Q6PF18 240 aaPredicted RBP14.04□□□□□ -0.16
UPF1-210ENST00000600689 CNFNQ9BYD5 112 aa14.04□□□□□ -0.16
UPF1-210ENST00000600689 MAP1AP78559 2803 aaPredicted RBP14.03□□□□□ -0.16
UPF1-210ENST00000600689 ARL3P36405 182 aa14.03□□□□□ -0.16
UPF1-210ENST00000600689 RPL11P62913 178 aaKnown RBP14.03□□□□□ -0.16
UPF1-210ENST00000600689 IGHV7-81A0A0B4J1V7 117 aa14.03□□□□□ -0.16
UPF1-210ENST00000600689 PLNP26678 52 aa14.03□□□□□ -0.16
UPF1-210ENST00000600689 NPBQ8NG41 125 aa14.03□□□□□ -0.16
UPF1-210ENST00000600689 PRO0461Q9UI25 63 aa14.03□□□□□ -0.16
UPF1-210ENST00000600689 UCNP55089 124 aa14.02□□□□□ -0.16
UPF1-210ENST00000600689 VMO1Q7Z5L0 202 aa14.02□□□□□ -0.16
UPF1-210ENST00000600689 SMIM2Q9BVW6 85 aa14.02□□□□□ -0.16
UPF1-210ENST00000600689 CELSR1Q9NYQ6 3014 aa14.02□□□□□ -0.16
UPF1-210ENST00000600689 H7C2G1 150 aa14.02□□□□□ -0.17
UPF1-210ENST00000600689 MT-ATP8P03928 68 aa14.02□□□□□ -0.17
UPF1-210ENST00000600689 C16orf92Q96LL3 132 aa14.02□□□□□ -0.17
UPF1-210ENST00000600689 PRSS29PA6NIE9 313 aa14.01□□□□□ -0.17
UPF1-210ENST00000600689 NFE4Q86UQ8 179 aa14.01□□□□□ -0.17
UPF1-210ENST00000600689 SCGB2A1O75556 95 aa14.01□□□□□ -0.17
UPF1-210ENST00000600689 C8orf86Q6ZUL3 223 aa14.01□□□□□ -0.17
UPF1-210ENST00000600689 COX8CQ7Z4L0 72 aa14.01□□□□□ -0.17
UPF1-210ENST00000600689 SPATA25Q9BR10 227 aa14.01□□□□□ -0.17
UPF1-210ENST00000600689 ATP6V0E1O15342 81 aa14.01□□□□□ -0.17
UPF1-210ENST00000600689 SPINK8P0C7L1 97 aa14.01□□□□□ -0.17
UPF1-210ENST00000600689 SMCPP49901 116 aaPredicted RBP14□□□□□ -0.17
UPF1-210ENST00000600689 C2orf66Q6UXQ4 117 aa14□□□□□ -0.17
UPF1-210ENST00000600689 TRAV8-2A0A0B4J237 113 aa14□□□□□ -0.17
UPF1-210ENST00000600689 F6UB75 175 aa13.99□□□□□ -0.17
UPF1-210ENST00000600689 FOXI1Q12951 378 aa13.99□□□□□ -0.17
UPF1-210ENST00000600689 GEMIN7Q9H840 131 aaKnown RBP13.99□□□□□ -0.17
UPF1-210ENST00000600689 A0A1W2PPR1 153 aa13.99□□□□□ -0.17
UPF1-210ENST00000600689 PRSS47A8MTI9 375 aa13.99□□□□□ -0.17
UPF1-210ENST00000600689 SUMO2P61956 95 aaKnown RBP13.99□□□□□ -0.17
UPF1-210ENST00000600689 PSMG3-AS1Q96PY0 264 aa13.99□□□□□ -0.17
UPF1-210ENST00000600689 IGHV3OR16-10A0A075B7F0 116 aa13.98□□□□□ -0.17
UPF1-210ENST00000600689 LINC01546A6NGU7 62 aa13.98□□□□□ -0.17
UPF1-210ENST00000600689 SCGB1C2P0DMR2 95 aa13.98□□□□□ -0.17
UPF1-210ENST00000600689 FHL3Q13643 280 aa13.98□□□□□ -0.17
UPF1-210ENST00000600689 ZFAND3Q9H8U3 227 aa13.98□□□□□ -0.17
UPF1-210ENST00000600689 PHLDA3Q9Y5J5 127 aa13.98□□□□□ -0.17
UPF1-210ENST00000600689 OR11H6Q8NGC7 330 aa13.98□□□□□ -0.17
UPF1-210ENST00000600689 BAALCQ8WXS3 180 aa13.98□□□□□ -0.17
UPF1-210ENST00000600689 RASL10AQ92737 203 aa13.98□□□□□ -0.17
UPF1-210ENST00000600689 DUSP14O95147 198 aaKnown RBP13.97□□□□□ -0.17
UPF1-210ENST00000600689 DLX4Q92988 240 aaPredicted RBP13.97□□□□□ -0.17
UPF1-210ENST00000600689 KIR2DL4Q99706 377 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms