RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 SNURFLB1AK76 121 aa8.75□□□□□ -1.01
UPF1-203ENST00000594504 NUDT3O95989 172 aa8.75□□□□□ -1.01
UPF1-203ENST00000594504 NKX2-5P52952 324 aaPredicted RBP8.75□□□□□ -1.01
UPF1-203ENST00000594504 SAPCD1Q5SSQ6 148 aa8.75□□□□□ -1.01
UPF1-203ENST00000594504 NOP10Q9NPE3 64 aaKnown RBP8.75□□□□□ -1.01
UPF1-203ENST00000594504 MUC4Q99102 2169 aa8.74□□□□□ -1.01
UPF1-203ENST00000594504 TRAV21A0A0B4J279 112 aa8.74□□□□□ -1.01
UPF1-203ENST00000594504 ATP5G3P48201 142 aa8.74□□□□□ -1.01
UPF1-203ENST00000594504 TNP2Q05952 138 aa8.74□□□□□ -1.01
UPF1-203ENST00000594504 DAZ2Q13117 558 aaKnown RBP8.74□□□□□ -1.01
UPF1-203ENST00000594504 SOHLH1Q5JUK2 328 aa8.74□□□□□ -1.01
UPF1-203ENST00000594504 IBA57Q5T440 356 aaKnown RBP8.74□□□□□ -1.01
UPF1-203ENST00000594504 FAM159AQ6UWV7 190 aa8.74□□□□□ -1.01
UPF1-203ENST00000594504 Q6ZQT7 251 aa8.74□□□□□ -1.01
UPF1-203ENST00000594504 PRNTQ86SH4 94 aa8.74□□□□□ -1.01
UPF1-203ENST00000594504 C15orf53Q8NAA6 179 aa8.74□□□□□ -1.01
UPF1-203ENST00000594504 C11orf72Q8NBR9 251 aa8.74□□□□□ -1.01
UPF1-203ENST00000594504 LINC00479Q96M42 142 aa8.74□□□□□ -1.01
UPF1-203ENST00000594504 MANBALQ9NQG1 85 aa8.74□□□□□ -1.01
UPF1-203ENST00000594504 TRAV34A0A0B4J273 112 aa8.73□□□□□ -1.01
UPF1-203ENST00000594504 TDRG1Q3Y452 100 aa8.73□□□□□ -1.01
UPF1-203ENST00000594504 SMUG1Q53HV7 270 aa8.73□□□□□ -1.01
UPF1-203ENST00000594504 MUC21Q5SSG8 566 aa8.73□□□□□ -1.01
UPF1-203ENST00000594504 Q86TA4 180 aa8.73□□□□□ -1.01
UPF1-203ENST00000594504 ZNRF2Q8NHG8 242 aa8.73□□□□□ -1.01
UPF1-203ENST00000594504 FMC1Q96HJ9 113 aa8.73□□□□□ -1.01
UPF1-203ENST00000594504 C8orf49Q96NF6 230 aa8.73□□□□□ -1.01
UPF1-203ENST00000594504 GSN-AS1Q9NRJ2 163 aa8.73□□□□□ -1.01
UPF1-203ENST00000594504 KLF12Q9Y4X4 402 aa8.73□□□□□ -1.01
UPF1-203ENST00000594504 GCGP01275 180 aa8.72□□□□□ -1.01
UPF1-203ENST00000594504 AKR1C3P42330 323 aa8.72□□□□□ -1.01
UPF1-203ENST00000594504 TCL1AP56279 114 aa8.72□□□□□ -1.01
UPF1-203ENST00000594504 UBE2G1P62253 170 aa8.72□□□□□ -1.01
UPF1-203ENST00000594504 CCL20P78556 96 aa8.72□□□□□ -1.01
UPF1-203ENST00000594504 ALKAL2Q6UX46 152 aa8.72□□□□□ -1.01
UPF1-203ENST00000594504 LINC00612Q8N6U2 182 aa8.72□□□□□ -1.01
UPF1-203ENST00000594504 GNG13Q9P2W3 67 aa8.72□□□□□ -1.01
UPF1-203ENST00000594504 TP53TG3Q9ULZ0 132 aa8.72□□□□□ -1.01
UPF1-203ENST00000594504 PKD1P98161 4303 aa8.71□□□□□ -1.01
UPF1-203ENST00000594504 TRGV11A0A075B6L2 103 aa8.71□□□□□ -1.02
UPF1-203ENST00000594504 TRBV6-1A0A0K0K1D8 114 aa8.71□□□□□ -1.02
UPF1-203ENST00000594504 NBDYA0A0U1RRE5 68 aa8.71□□□□□ -1.02
UPF1-203ENST00000594504 IFNA1P01562 189 aa8.71□□□□□ -1.02
UPF1-203ENST00000594504 ATP5G1P05496 136 aa8.71□□□□□ -1.02
UPF1-203ENST00000594504 PFN1P07737 140 aaKnown RBP8.71□□□□□ -1.02
UPF1-203ENST00000594504 ZNF415Q09FC8 603 aa8.71□□□□□ -1.02
UPF1-203ENST00000594504 KCNS1Q96KK3 526 aa8.71□□□□□ -1.02
UPF1-203ENST00000594504 TXNDC17Q9BRA2 123 aa8.71□□□□□ -1.02
UPF1-203ENST00000594504 NAGKQ9UJ70 344 aa8.71□□□□□ -1.02
UPF1-203ENST00000594504 ZFP30Q9Y2G7 519 aa8.71□□□□□ -1.02
UPF1-203ENST00000594504 BOLA1Q9Y3E2 137 aa8.71□□□□□ -1.02
UPF1-203ENST00000594504 LINC00588Q9Y4M8 146 aa8.71□□□□□ -1.02
UPF1-203ENST00000594504 SCO2A0A1W2PP80 73 aa8.7□□□□□ -1.02
UPF1-203ENST00000594504 S100A9P06702 114 aaKnown RBP8.7□□□□□ -1.02
UPF1-203ENST00000594504 ZNF80P51504 273 aaPredicted RBP8.7□□□□□ -1.02
UPF1-203ENST00000594504 FAM3BP58499 235 aaPredicted RBP8.7□□□□□ -1.02
UPF1-203ENST00000594504 BLOC1S1P78537 153 aa8.7□□□□□ -1.02
UPF1-203ENST00000594504 TMEM183BQ1AE95 376 aa8.7□□□□□ -1.02
UPF1-203ENST00000594504 COX8CQ7Z4L0 72 aa8.7□□□□□ -1.02
UPF1-203ENST00000594504 TMEM183AQ8IXX5 376 aa8.7□□□□□ -1.02
UPF1-203ENST00000594504 SDF2L1Q9HCN8 221 aa8.7□□□□□ -1.02
UPF1-203ENST00000594504 RYR1P21817 5038 aa8.7□□□□□ -1.02
UPF1-203ENST00000594504 DNAH11Q96DT5 4516 aa8.7□□□□□ -1.02
UPF1-203ENST00000594504 TRGV1A0A0A0MS02 117 aa8.69□□□□□ -1.02
UPF1-203ENST00000594504 GAGE12BA1L429 117 aa8.69□□□□□ -1.02
UPF1-203ENST00000594504 SPINK4O60575 86 aa8.69□□□□□ -1.02
UPF1-203ENST00000594504 GAGE7O76087 117 aa8.69□□□□□ -1.02
UPF1-203ENST00000594504 LTAP01374 205 aa8.69□□□□□ -1.02
UPF1-203ENST00000594504 GAGE12FP0CL80 117 aa8.69□□□□□ -1.02
UPF1-203ENST00000594504 GAGE12GP0CL81 117 aa8.69□□□□□ -1.02
UPF1-203ENST00000594504 GAGE12IP0CL82 117 aa8.69□□□□□ -1.02
UPF1-203ENST00000594504 TAGLN2P37802 199 aaKnown RBP8.69□□□□□ -1.02
UPF1-203ENST00000594504 Q6ZTI0 123 aa8.69□□□□□ -1.02
UPF1-203ENST00000594504 C6orf223Q8N319 242 aa8.69□□□□□ -1.02
UPF1-203ENST00000594504 MDFICQ9P1T7 246 aa8.69□□□□□ -1.02
UPF1-203ENST00000594504 PKHD1P08F94 4074 aa8.69□□□□□ -1.02
UPF1-203ENST00000594504 A0A0J9YY99 117 aa8.68□□□□□ -1.02
UPF1-203ENST00000594504 FABP5P3A8MUU1 101 aa8.68□□□□□ -1.02
UPF1-203ENST00000594504 C16orf90A8MZG2 172 aa8.68□□□□□ -1.02
UPF1-203ENST00000594504 BCL2P10415 239 aa8.68□□□□□ -1.02
UPF1-203ENST00000594504 CCL18P55774 89 aa8.68□□□□□ -1.02
UPF1-203ENST00000594504 OR5I1Q13606 314 aa8.68□□□□□ -1.02
UPF1-203ENST00000594504 C11orf52Q96A22 123 aa8.68□□□□□ -1.02
UPF1-203ENST00000594504 C18orf15Q96N68 181 aa8.68□□□□□ -1.02
UPF1-203ENST00000594504 SPXQ9BT56 116 aa8.68□□□□□ -1.02
UPF1-203ENST00000594504 C11orf21Q9P2W6 132 aa8.68□□□□□ -1.02
UPF1-203ENST00000594504 TRGV2A0A075B6R0 118 aa8.67□□□□□ -1.02
UPF1-203ENST00000594504 IGHV3-16A0A0C4DH30 117 aa8.67□□□□□ -1.02
UPF1-203ENST00000594504 GNRH2O43555 120 aa8.67□□□□□ -1.02
UPF1-203ENST00000594504 PDE6DO43924 150 aa8.67□□□□□ -1.02
UPF1-203ENST00000594504 TYMSP04818 313 aa8.67□□□□□ -1.02
UPF1-203ENST00000594504 MEF2BQ02080 365 aaPredicted RBP8.67□□□□□ -1.02
UPF1-203ENST00000594504 ZC2HC1AQ96GY0 325 aa8.67□□□□□ -1.02
UPF1-203ENST00000594504 TRAV26-1A0A087WT03 109 aa8.66□□□□□ -1.02
UPF1-203ENST00000594504 HOXA5P20719 270 aa8.66□□□□□ -1.02
UPF1-203ENST00000594504 FAM162BQ5T6X4 162 aa8.66□□□□□ -1.02
UPF1-203ENST00000594504 BAGE2Q86Y30 109 aa8.66□□□□□ -1.02
UPF1-203ENST00000594504 LYPD6BQ8NI32 183 aa8.66□□□□□ -1.02
UPF1-203ENST00000594504 Q9H8V8 135 aa8.66□□□□□ -1.02
UPF1-203ENST00000594504 MRPL16Q9NX20 251 aaKnown RBP8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 216.8 ms