RNA–Protein interactions for RNA: ENST00000594067.5

LIG1-206, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 2,697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-206ENST00000594067 MRPL35Q9NZE8 188 aaKnown RBP12.6□□□□□ -0.39
LIG1-206ENST00000594067 SRSF1Q07955 248 aaKnown RBP eCLIP12.6□□□□□ -0.396e-6■■■□□ 19
LIG1-206ENST00000594067 U3KQE9 123 aa12.6□□□□□ -0.39
LIG1-206ENST00000594067 HLA-DRB4P13762 266 aa12.59□□□□□ -0.39
LIG1-206ENST00000594067 PRR9Q5T870 116 aa12.59□□□□□ -0.39
LIG1-206ENST00000594067 SPANXN1Q5VSR9 72 aa12.59□□□□□ -0.39
LIG1-206ENST00000594067 C9orf47Q6ZRZ4 202 aa12.59□□□□□ -0.39
LIG1-206ENST00000594067 HLA-DRB4X5D2U9 266 aa12.59□□□□□ -0.39
LIG1-206ENST00000594067 E9PLD3 99 aa12.59□□□□□ -0.39
LIG1-206ENST00000594067 IGF1P05019 195 aa12.59□□□□□ -0.39
LIG1-206ENST00000594067 NRACQ8N912 160 aa12.59□□□□□ -0.39
LIG1-206ENST00000594067 AGRNO00468 2067 aa12.59□□□□□ -0.39
LIG1-206ENST00000594067 H3BVH4 76 aa12.58□□□□□ -0.4
LIG1-206ENST00000594067 MRPL53Q96EL3 112 aaKnown RBP12.58□□□□□ -0.4
LIG1-206ENST00000594067 C20orf173Q96LM9 149 aa12.58□□□□□ -0.4
LIG1-206ENST00000594067 PRSS47A8MTI9 375 aa12.58□□□□□ -0.4
LIG1-206ENST00000594067 SPRY2O43597 315 aa12.58□□□□□ -0.4
LIG1-206ENST00000594067 TRAV41A0A0B4J266 112 aa12.57□□□□□ -0.4
LIG1-206ENST00000594067 IGLL5B9A064 214 aa12.57□□□□□ -0.4
LIG1-206ENST00000594067 FOXI2Q6ZQN5 318 aa12.57□□□□□ -0.4
LIG1-206ENST00000594067 MYOZ3Q8TDC0 251 aa12.57□□□□□ -0.4
LIG1-206ENST00000594067 HIF1ANQ9NWT6 349 aa12.57□□□□□ -0.4
LIG1-206ENST00000594067 LAGE3Q14657 143 aa12.56□□□□□ -0.4
LIG1-206ENST00000594067 TRBV12-3P01733 135 aa12.56□□□□□ -0.4
LIG1-206ENST00000594067 DEFB1P60022 68 aa12.56□□□□□ -0.4
LIG1-206ENST00000594067 GLMPQ8WWB7 406 aa12.56□□□□□ -0.4
LIG1-206ENST00000594067 A0A087WX48 190 aa12.55□□□□□ -0.4
LIG1-206ENST00000594067 ARL3P36405 182 aa12.55□□□□□ -0.4
LIG1-206ENST00000594067 WFDC2Q14508 124 aa12.55□□□□□ -0.4
LIG1-206ENST00000594067 UNQ9165/PRO28630Q6UXU0 137 aa12.55□□□□□ -0.4
LIG1-206ENST00000594067 BRD3OSQ6XYD6 125 aa12.55□□□□□ -0.4
LIG1-206ENST00000594067 MOB4Q9Y3A3 225 aa12.55□□□□□ -0.4
LIG1-206ENST00000594067 LY6DQ14210 128 aa12.55□□□□□ -0.4
LIG1-206ENST00000594067 HIVEP3Q5T1R4 2406 aa12.55□□□□□ -0.4
LIG1-206ENST00000594067 F8W1H4 67 aa12.55□□□□□ -0.4
LIG1-206ENST00000594067 TAL2Q16559 108 aa12.55□□□□□ -0.4
LIG1-206ENST00000594067 C12orf74Q32Q52 190 aa12.55□□□□□ -0.4
LIG1-206ENST00000594067 SAMD13Q5VXD3 122 aa12.54□□□□□ -0.4
LIG1-206ENST00000594067 ZNF479Q96JC4 524 aa12.54□□□□□ -0.4
LIG1-206ENST00000594067 SPANXB1Q9NS25 103 aaPredicted RBP12.54□□□□□ -0.4
LIG1-206ENST00000594067 IGHV4-4A0A075B6R2 117 aa12.54□□□□□ -0.4
LIG1-206ENST00000594067 C9orf139Q6ZV77 190 aa12.54□□□□□ -0.4
LIG1-206ENST00000594067 ITLN2Q8WWU7 325 aaPredicted RBP12.54□□□□□ -0.4
LIG1-206ENST00000594067 C19orf84I3L1E1 186 aa12.53□□□□□ -0.4
LIG1-206ENST00000594067 GPHB5Q86YW7 130 aa12.53□□□□□ -0.4
LIG1-206ENST00000594067 FAM223BA6NKX1 122 aa12.53□□□□□ -0.4
LIG1-206ENST00000594067 M0R381 172 aa12.53□□□□□ -0.4
LIG1-206ENST00000594067 C19orf54Q5BKX5 351 aa12.53□□□□□ -0.4
LIG1-206ENST00000594067 FAM223AQ8IWN6 122 aa12.53□□□□□ -0.4
LIG1-206ENST00000594067 SPOCK3Q9BQ16 436 aa12.53□□□□□ -0.4
LIG1-206ENST00000594067 H3BMG7 143 aa12.52□□□□□ -0.41
LIG1-206ENST00000594067 AZU1P20160 251 aa12.52□□□□□ -0.41
LIG1-206ENST00000594067 GTSF1LQ9H1H1 148 aa12.52□□□□□ -0.41
LIG1-206ENST00000594067 IGHV3-11P01762 117 aa12.52□□□□□ -0.41
LIG1-206ENST00000594067 LY6EQ16553 131 aa12.52□□□□□ -0.41
LIG1-206ENST00000594067 ZFAND2AQ8N6M9 145 aa12.51□□□□□ -0.41
LIG1-206ENST00000594067 HIST1H4GQ99525 98 aa12.51□□□□□ -0.41
LIG1-206ENST00000594067 IGKV3-7A0A075B6H7 116 aa12.51□□□□□ -0.41
LIG1-206ENST00000594067 PLNP26678 52 aa12.51□□□□□ -0.41
LIG1-206ENST00000594067 AMTNQ6UX39 209 aa12.51□□□□□ -0.41
LIG1-206ENST00000594067 SIGMAR1Q99720 223 aa12.51□□□□□ -0.41
LIG1-206ENST00000594067 KLK15Q9H2R5 256 aa12.51□□□□□ -0.41
LIG1-206ENST00000594067 VPS13CQ709C8 3753 aa12.51□□□□□ -0.41
LIG1-206ENST00000594067 CELSR1Q9NYQ6 3014 aa12.51□□□□□ -0.41
LIG1-206ENST00000594067 TRBV7-3A0A075B6L6 115 aa12.5□□□□□ -0.41
LIG1-206ENST00000594067 IGHV4-39P01824 125 aa12.5□□□□□ -0.41
LIG1-206ENST00000594067 RPL11P62913 178 aaKnown RBP12.5□□□□□ -0.41
LIG1-206ENST00000594067 CD300EQ496F6 205 aaPredicted RBP12.5□□□□□ -0.41
LIG1-206ENST00000594067 SH2D6Q7Z4S9 175 aa12.5□□□□□ -0.41
LIG1-206ENST00000594067 SMIM2Q9BVW6 85 aa12.5□□□□□ -0.41
LIG1-206ENST00000594067 CHTOPQ9Y3Y2 248 aaKnown RBP12.5□□□□□ -0.41
LIG1-206ENST00000594067 TSSC4Q9Y5U2 329 aaPredicted RBP12.5□□□□□ -0.41
LIG1-206ENST00000594067 IGHV1-69DA0A0B4J2H0 117 aa12.5□□□□□ -0.41
LIG1-206ENST00000594067 F6UB75 175 aa12.5□□□□□ -0.41
LIG1-206ENST00000594067 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.5□□□□□ -0.41
LIG1-206ENST00000594067 IGHV1-69P01742 117 aa12.5□□□□□ -0.41
LIG1-206ENST00000594067 S100A4P26447 101 aaKnown RBP12.5□□□□□ -0.41
LIG1-206ENST00000594067 OR10J6PQ8NGY7 276 aa12.5□□□□□ -0.41
LIG1-206ENST00000594067 MRAP2Q96G30 205 aa12.5□□□□□ -0.41
LIG1-206ENST00000594067 GAGE12HA6NDE8 117 aa12.49□□□□□ -0.41
LIG1-206ENST00000594067 CIDEAO60543 219 aa12.49□□□□□ -0.41
LIG1-206ENST00000594067 ETDBQ3ZM63 59 aa12.49□□□□□ -0.41
LIG1-206ENST00000594067 LINC00477Q96M19 166 aa12.49□□□□□ -0.41
LIG1-206ENST00000594067 F8VRH5 84 aa12.49□□□□□ -0.41
LIG1-206ENST00000594067 H7C1H1 209 aa12.49□□□□□ -0.41
LIG1-206ENST00000594067 C14orf178Q8N769 122 aaPredicted RBP12.49□□□□□ -0.41
LIG1-206ENST00000594067 RPL39LQ96EH5 51 aaKnown RBP12.49□□□□□ -0.41
LIG1-206ENST00000594067 LENEPQ9Y5L5 61 aa12.49□□□□□ -0.41
LIG1-206ENST00000594067 TRAV12-1A0A0B4J245 112 aa12.48□□□□□ -0.41
LIG1-206ENST00000594067 TRAV21A0A0B4J279 112 aa12.48□□□□□ -0.41
LIG1-206ENST00000594067 RRN3P1Q2M238 152 aa12.48□□□□□ -0.41
LIG1-206ENST00000594067 ANXA2RQ3ZCQ2 193 aa12.48□□□□□ -0.41
LIG1-206ENST00000594067 SPAG8Q99932 426 aaPredicted RBP12.48□□□□□ -0.41
LIG1-206ENST00000594067 A0A1B0GWB2 263 aa12.48□□□□□ -0.41
LIG1-206ENST00000594067 NDUFA4O00483 81 aa12.48□□□□□ -0.41
LIG1-206ENST00000594067 SOCS3O14543 225 aa12.48□□□□□ -0.41
LIG1-206ENST00000594067 CRIP2P52943 208 aaPredicted RBP12.48□□□□□ -0.41
LIG1-206ENST00000594067 SMAGPQ0VAQ4 97 aa12.48□□□□□ -0.41
LIG1-206ENST00000594067 LCNL1Q6ZST4 164 aa12.48□□□□□ -0.41
LIG1-206ENST00000594067 RASL10AQ92737 203 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 80.9 ms