RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 GNRH2O43555 120 aa10.56□□□□□ -0.72
TRIM28-203ENST00000593582 CRYBA4P53673 196 aa10.56□□□□□ -0.72
TRIM28-203ENST00000593582 FLI1Q01543 452 aaPredicted RBP10.56□□□□□ -0.72
TRIM28-203ENST00000593582 FHL2Q14192 279 aa10.56□□□□□ -0.72
TRIM28-203ENST00000593582 ZNF726P1Q15940 193 aa10.56□□□□□ -0.72
TRIM28-203ENST00000593582 ZFP69Q49AA0 526 aa10.56□□□□□ -0.72
TRIM28-203ENST00000593582 TTC32Q5I0X7 151 aa10.56□□□□□ -0.72
TRIM28-203ENST00000593582 C6orf223Q8N319 242 aa10.56□□□□□ -0.72
TRIM28-203ENST00000593582 C8orf49Q96NF6 230 aa10.56□□□□□ -0.72
TRIM28-203ENST00000593582 PSG8Q9UQ74 426 aa10.56□□□□□ -0.72
TRIM28-203ENST00000593582 PKD1P98161 4303 aa10.55□□□□□ -0.72
TRIM28-203ENST00000593582 SMLR1H3BR10 107 aa10.55□□□□□ -0.72
TRIM28-203ENST00000593582 M0R2P5 195 aa10.55□□□□□ -0.72
TRIM28-203ENST00000593582 GCGP01275 180 aa10.55□□□□□ -0.72
TRIM28-203ENST00000593582 IFNA7P01567 189 aa10.55□□□□□ -0.72
TRIM28-203ENST00000593582 IGLV2-11P01706 119 aa10.55□□□□□ -0.72
TRIM28-203ENST00000593582 PRNTQ86SH4 94 aa10.55□□□□□ -0.72
TRIM28-203ENST00000593582 TMEM75Q8N9X5 138 aa10.55□□□□□ -0.72
TRIM28-203ENST00000593582 MUC4Q99102 2169 aa10.55□□□□□ -0.72
TRIM28-203ENST00000593582 TYMSP04818 313 aa10.54□□□□□ -0.72
TRIM28-203ENST00000593582 SFTA3P0C7M3 94 aa10.54□□□□□ -0.72
TRIM28-203ENST00000593582 SMUG1Q53HV7 270 aa10.54□□□□□ -0.72
TRIM28-203ENST00000593582 SAPCD1Q5SSQ6 148 aa10.54□□□□□ -0.72
TRIM28-203ENST00000593582 ZNF479Q96JC4 524 aa10.54□□□□□ -0.72
TRIM28-203ENST00000593582 NKX6-2Q9C056 277 aaPredicted RBP10.54□□□□□ -0.72
TRIM28-203ENST00000593582 CYTL1Q9NRR1 136 aa10.54□□□□□ -0.72
TRIM28-203ENST00000593582 PFN1P07737 140 aaKnown RBP10.53□□□□□ -0.72
TRIM28-203ENST00000593582 PPT1P50897 306 aa10.53□□□□□ -0.72
TRIM28-203ENST00000593582 FGF8P55075 233 aaPredicted RBP10.53□□□□□ -0.72
TRIM28-203ENST00000593582 UBE2G2P60604 165 aa10.53□□□□□ -0.72
TRIM28-203ENST00000593582 MRPL23Q16540 153 aaKnown RBP10.53□□□□□ -0.72
TRIM28-203ENST00000593582 OR4C5Q8NGB2 326 aa10.53□□□□□ -0.72
TRIM28-203ENST00000593582 TRAV4A0A0B4J268 109 aa10.52□□□□□ -0.73
TRIM28-203ENST00000593582 A0A1W2PPQ1 181 aa10.52□□□□□ -0.73
TRIM28-203ENST00000593582 MAP1LC3B2A6NCE7 125 aa10.52□□□□□ -0.73
TRIM28-203ENST00000593582 ZNF80P51504 273 aaPredicted RBP10.52□□□□□ -0.73
TRIM28-203ENST00000593582 ZNF345Q14585 488 aa10.52□□□□□ -0.73
TRIM28-203ENST00000593582 KCNRGQ8N5I3 272 aa10.52□□□□□ -0.73
TRIM28-203ENST00000593582 PCNPQ8WW12 178 aaKnown RBP10.52□□□□□ -0.73
TRIM28-203ENST00000593582 LINC00479Q96M42 142 aa10.52□□□□□ -0.73
TRIM28-203ENST00000593582 MAP1LC3BQ9GZQ8 125 aa10.52□□□□□ -0.73
TRIM28-203ENST00000593582 FAM74A7A6NL05 159 aa10.51□□□□□ -0.73
TRIM28-203ENST00000593582 HMSDA8MTL9 139 aa10.51□□□□□ -0.73
TRIM28-203ENST00000593582 NEGR1Q7Z3B1 354 aa10.51□□□□□ -0.73
TRIM28-203ENST00000593582 STOML3Q8TAV4 291 aa10.51□□□□□ -0.73
TRIM28-203ENST00000593582 HIST1H2BAQ96A08 127 aa10.51□□□□□ -0.73
TRIM28-203ENST00000593582 TRAV34A0A0B4J273 112 aa10.5□□□□□ -0.73
TRIM28-203ENST00000593582 C9JCJ5 164 aa10.5□□□□□ -0.73
TRIM28-203ENST00000593582 K7EQD1 137 aa10.5□□□□□ -0.73
TRIM28-203ENST00000593582 PEX7O00628 323 aa10.5□□□□□ -0.73
TRIM28-203ENST00000593582 SIVA1O15304 175 aa10.5□□□□□ -0.73
TRIM28-203ENST00000593582 ORM1P02763 201 aa10.5□□□□□ -0.73
TRIM28-203ENST00000593582 GYPEP15421 78 aa10.5□□□□□ -0.73
TRIM28-203ENST00000593582 SRIP30626 198 aa10.5□□□□□ -0.73
TRIM28-203ENST00000593582 TNP2Q05952 138 aa10.5□□□□□ -0.73
TRIM28-203ENST00000593582 ZNF876PQ49A33 203 aa10.5□□□□□ -0.73
TRIM28-203ENST00000593582 KRTAP1-5Q9BYS1 174 aa10.5□□□□□ -0.73
TRIM28-203ENST00000593582 C11orf21Q9P2W6 132 aa10.5□□□□□ -0.73
TRIM28-203ENST00000593582 ARL2-SNX15V9GYD0 113 aa10.5□□□□□ -0.73
TRIM28-203ENST00000593582 A0A0D9SG52 128 aa10.49□□□□□ -0.73
TRIM28-203ENST00000593582 NXPH4O95158 308 aa10.49□□□□□ -0.73
TRIM28-203ENST00000593582 BTF3P20290 206 aaKnown RBP10.49□□□□□ -0.73
TRIM28-203ENST00000593582 LYPD5Q6UWN5 251 aa10.49□□□□□ -0.73
TRIM28-203ENST00000593582 OR11H4Q8NGC9 324 aa10.49□□□□□ -0.73
TRIM28-203ENST00000593582 KANTRA0A1W2PQU2 76 aa10.48□□□□□ -0.73
TRIM28-203ENST00000593582 SEC11BP0C7V7 166 aa10.48□□□□□ -0.73
TRIM28-203ENST00000593582 MED14OSP0DP75 135 aa10.48□□□□□ -0.73
TRIM28-203ENST00000593582 FHITP49789 147 aa10.48□□□□□ -0.73
TRIM28-203ENST00000593582 TXNDC17Q9BRA2 123 aa10.48□□□□□ -0.73
TRIM28-203ENST00000593582 ZNF471Q9BX82 626 aaPredicted RBP10.48□□□□□ -0.73
TRIM28-203ENST00000593582 FABP5P3A8MUU1 101 aa10.47□□□□□ -0.73
TRIM28-203ENST00000593582 UMAD1C9J7I0 102 aa10.47□□□□□ -0.73
TRIM28-203ENST00000593582 BCL2L11O43521 198 aa10.47□□□□□ -0.73
TRIM28-203ENST00000593582 CST9LP1Q5W188 147 aa10.47□□□□□ -0.73
TRIM28-203ENST00000593582 Q86TA4 180 aa10.47□□□□□ -0.73
TRIM28-203ENST00000593582 C9orf85Q96MD7 179 aa10.47□□□□□ -0.73
TRIM28-203ENST00000593582 TCEAL7Q9BRU2 100 aa10.47□□□□□ -0.73
TRIM28-203ENST00000593582 HERC2O95714 4834 aa10.46□□□□□ -0.73
TRIM28-203ENST00000593582 CIDEAO60543 219 aa10.46□□□□□ -0.73
TRIM28-203ENST00000593582 GATA1P15976 413 aaPredicted RBP10.46□□□□□ -0.73
TRIM28-203ENST00000593582 S100A4P26447 101 aaKnown RBP10.46□□□□□ -0.73
TRIM28-203ENST00000593582 EIF5AP63241 154 aaKnown RBP10.46□□□□□ -0.73
TRIM28-203ENST00000593582 SH2D6Q7Z4S9 175 aa10.46□□□□□ -0.73
TRIM28-203ENST00000593582 FAM213BQ8TBF2 198 aa10.46□□□□□ -0.73
TRIM28-203ENST00000593582 SFT2D1Q8WV19 159 aa10.46□□□□□ -0.73
TRIM28-203ENST00000593582 FMC1Q96HJ9 113 aa10.46□□□□□ -0.73
TRIM28-203ENST00000593582 ZFP30Q9Y2G7 519 aa10.46□□□□□ -0.73
TRIM28-203ENST00000593582 DNAH11Q96DT5 4516 aa10.46□□□□□ -0.74
TRIM28-203ENST00000593582 KIAA1109Q2LD37 5005 aa10.45□□□□□ -0.74
TRIM28-203ENST00000593582 IGKV3D-20A0A0C4DH25 116 aa10.45□□□□□ -0.74
TRIM28-203ENST00000593582 RNASE3P12724 160 aaKnown RBP10.45□□□□□ -0.74
TRIM28-203ENST00000593582 UBE2G1P62253 170 aa10.45□□□□□ -0.74
TRIM28-203ENST00000593582 CFAP126Q5VTH2 177 aa10.45□□□□□ -0.74
TRIM28-203ENST00000593582 NHLRC2Q8NBF2 726 aa10.45□□□□□ -0.74
TRIM28-203ENST00000593582 PTH2Q96A98 100 aa10.45□□□□□ -0.74
TRIM28-203ENST00000593582 TRAV9-2A0A087WT02 112 aa10.44□□□□□ -0.74
TRIM28-203ENST00000593582 RS1O15537 224 aa10.44□□□□□ -0.74
TRIM28-203ENST00000593582 PFDN1O60925 122 aa10.44□□□□□ -0.74
TRIM28-203ENST00000593582 ASIPP42127 132 aa10.44□□□□□ -0.74
TRIM28-203ENST00000593582 LINC00315P59091 139 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 143.3 ms