RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 Q6ZTI0 123 aa8.4□□□□□ -1.06
LIG3-213ENST00000590630 Q86TA4 180 aa8.4□□□□□ -1.06
LIG3-213ENST00000590630 FMC1Q96HJ9 113 aa8.4□□□□□ -1.06
LIG3-213ENST00000590630 KCNS1Q96KK3 526 aa8.4□□□□□ -1.06
LIG3-213ENST00000590630 C18orf15Q96N68 181 aa8.4□□□□□ -1.06
LIG3-213ENST00000590630 C8orf49Q96NF6 230 aa8.4□□□□□ -1.06
LIG3-213ENST00000590630 NAGKQ9UJ70 344 aa8.4□□□□□ -1.06
LIG3-213ENST00000590630 KLF12Q9Y4X4 402 aa8.4□□□□□ -1.06
LIG3-213ENST00000590630 TRGV1A0A0A0MS02 117 aa8.39□□□□□ -1.07
LIG3-213ENST00000590630 F5H768 121 aa8.39□□□□□ -1.07
LIG3-213ENST00000590630 SPINK4O60575 86 aa8.39□□□□□ -1.07
LIG3-213ENST00000590630 GCGP01275 180 aa8.39□□□□□ -1.07
LIG3-213ENST00000590630 NKX2-5P52952 324 aaPredicted RBP8.39□□□□□ -1.07
LIG3-213ENST00000590630 UBE2G1P62253 170 aa8.39□□□□□ -1.07
LIG3-213ENST00000590630 TMEM183BQ1AE95 376 aa8.39□□□□□ -1.07
LIG3-213ENST00000590630 TMEM88Q6PEY1 159 aa8.39□□□□□ -1.07
LIG3-213ENST00000590630 TMEM183AQ8IXX5 376 aa8.39□□□□□ -1.07
LIG3-213ENST00000590630 SDF2L1Q9HCN8 221 aa8.39□□□□□ -1.07
LIG3-213ENST00000590630 MANBALQ9NQG1 85 aa8.39□□□□□ -1.07
LIG3-213ENST00000590630 ZFP30Q9Y2G7 519 aa8.39□□□□□ -1.07
LIG3-213ENST00000590630 TRGV2A0A075B6R0 118 aa8.38□□□□□ -1.07
LIG3-213ENST00000590630 TRBV6-1A0A0K0K1D8 114 aa8.38□□□□□ -1.07
LIG3-213ENST00000590630 ZNF80P51504 273 aaPredicted RBP8.38□□□□□ -1.07
LIG3-213ENST00000590630 C15orf53Q8NAA6 179 aa8.38□□□□□ -1.07
LIG3-213ENST00000590630 SPXQ9BT56 116 aa8.38□□□□□ -1.07
LIG3-213ENST00000590630 MDFICQ9P1T7 246 aa8.38□□□□□ -1.07
LIG3-213ENST00000590630 KMT2AQ03164 3969 aa8.37□□□□□ -1.07
LIG3-213ENST00000590630 IGHV3-16A0A0C4DH30 117 aa8.37□□□□□ -1.07
LIG3-213ENST00000590630 LOC105371267A0A1B0GV96 52 aa8.37□□□□□ -1.07
LIG3-213ENST00000590630 S100A9P06702 114 aaKnown RBP8.37□□□□□ -1.07
LIG3-213ENST00000590630 P0DMU3 169 aa8.37□□□□□ -1.07
LIG3-213ENST00000590630 FAM231AP0DMU4 169 aa8.37□□□□□ -1.07
LIG3-213ENST00000590630 FAM231CP0DMU5 169 aa8.37□□□□□ -1.07
LIG3-213ENST00000590630 AKR1C3P42330 323 aa8.37□□□□□ -1.07
LIG3-213ENST00000590630 CCL20P78556 96 aa8.37□□□□□ -1.07
LIG3-213ENST00000590630 COX8CQ7Z4L0 72 aa8.37□□□□□ -1.07
LIG3-213ENST00000590630 TXNDC17Q9BRA2 123 aa8.37□□□□□ -1.07
LIG3-213ENST00000590630 GNG13Q9P2W3 67 aa8.37□□□□□ -1.07
LIG3-213ENST00000590630 SCO2A0A1W2PP80 73 aa8.36□□□□□ -1.07
LIG3-213ENST00000590630 FABP5P3A8MUU1 101 aa8.36□□□□□ -1.07
LIG3-213ENST00000590630 GNRH2O43555 120 aa8.36□□□□□ -1.07
LIG3-213ENST00000590630 LTAP01374 205 aa8.36□□□□□ -1.07
LIG3-213ENST00000590630 TYMSP04818 313 aa8.36□□□□□ -1.07
LIG3-213ENST00000590630 RASL10AQ92737 203 aa8.36□□□□□ -1.07
LIG3-213ENST00000590630 MRPL16Q9NX20 251 aaKnown RBP8.36□□□□□ -1.07
LIG3-213ENST00000590630 VPS13DQ5THJ4 4388 aa8.36□□□□□ -1.07
LIG3-213ENST00000590630 IFNA1P01562 189 aa8.35□□□□□ -1.07
LIG3-213ENST00000590630 HOXA5P20719 270 aa8.35□□□□□ -1.07
LIG3-213ENST00000590630 OR5I1Q13606 314 aa8.35□□□□□ -1.07
LIG3-213ENST00000590630 ALKAL2Q6UX46 152 aa8.35□□□□□ -1.07
LIG3-213ENST00000590630 C11orf21Q9P2W6 132 aa8.35□□□□□ -1.07
LIG3-213ENST00000590630 TRAV26-1A0A087WT03 109 aa8.34□□□□□ -1.07
LIG3-213ENST00000590630 H3BNG1 76 aa8.34□□□□□ -1.07
LIG3-213ENST00000590630 M0R2P5 195 aa8.34□□□□□ -1.07
LIG3-213ENST00000590630 TAGLN2P37802 199 aaKnown RBP8.34□□□□□ -1.07
LIG3-213ENST00000590630 FAM162BQ5T6X4 162 aa8.34□□□□□ -1.07
LIG3-213ENST00000590630 C11orf52Q96A22 123 aa8.34□□□□□ -1.07
LIG3-213ENST00000590630 ZC2HC1AQ96GY0 325 aa8.34□□□□□ -1.07
LIG3-213ENST00000590630 NACAE9PAV3 2078 aa8.33□□□□□ -1.08
LIG3-213ENST00000590630 PDE6DO43924 150 aa8.33□□□□□ -1.08
LIG3-213ENST00000590630 BCL2P10415 239 aa8.33□□□□□ -1.08
LIG3-213ENST00000590630 BLOC1S1P78537 153 aa8.33□□□□□ -1.08
LIG3-213ENST00000590630 MEF2BQ02080 365 aaPredicted RBP8.33□□□□□ -1.08
LIG3-213ENST00000590630 POM121L12Q8N7R1 296 aa8.33□□□□□ -1.08
LIG3-213ENST00000590630 IGKV3D-20A0A0C4DH25 116 aa8.32□□□□□ -1.08
LIG3-213ENST00000590630 SH2D1AO60880 128 aa8.32□□□□□ -1.08
LIG3-213ENST00000590630 NUDT3O95989 172 aa8.32□□□□□ -1.08
LIG3-213ENST00000590630 ORM1P02763 201 aa8.32□□□□□ -1.08
LIG3-213ENST00000590630 RPL35P42766 123 aaKnown RBP8.32□□□□□ -1.08
LIG3-213ENST00000590630 CRIP1P50238 77 aa8.32□□□□□ -1.08
LIG3-213ENST00000590630 SLAQ13239 276 aa8.32□□□□□ -1.08
LIG3-213ENST00000590630 ZNF674Q2M3X9 581 aa8.32□□□□□ -1.08
LIG3-213ENST00000590630 RNF212Q495C1 297 aa8.32□□□□□ -1.08
LIG3-213ENST00000590630 BAGE2Q86Y30 109 aa8.32□□□□□ -1.08
LIG3-213ENST00000590630 C9orf85Q96MD7 179 aa8.32□□□□□ -1.08
LIG3-213ENST00000590630 MLST8Q9BVC4 326 aa8.32□□□□□ -1.08
LIG3-213ENST00000590630 VAX2Q9UIW0 290 aa8.32□□□□□ -1.08
LIG3-213ENST00000590630 TMA7Q9Y2S6 64 aaKnown RBP8.32□□□□□ -1.08
LIG3-213ENST00000590630 BOLA1Q9Y3E2 137 aa8.32□□□□□ -1.08
LIG3-213ENST00000590630 A0A0J9YY99 117 aa8.31□□□□□ -1.08
LIG3-213ENST00000590630 LINC00862A6NCI5 91 aa8.31□□□□□ -1.08
LIG3-213ENST00000590630 B4DEV8 164 aa8.31□□□□□ -1.08
LIG3-213ENST00000590630 RNASE3P12724 160 aaKnown RBP8.31□□□□□ -1.08
LIG3-213ENST00000590630 S100A4P26447 101 aaKnown RBP8.31□□□□□ -1.08
LIG3-213ENST00000590630 ASIPP42127 132 aa8.31□□□□□ -1.08
LIG3-213ENST00000590630 ZNF876PQ49A33 203 aa8.31□□□□□ -1.08
LIG3-213ENST00000590630 UBE2DNLQ8IWF7 75 aa8.31□□□□□ -1.08
LIG3-213ENST00000590630 NHLRC2Q8NBF2 726 aa8.31□□□□□ -1.08
LIG3-213ENST00000590630 PTH2Q96A98 100 aa8.31□□□□□ -1.08
LIG3-213ENST00000590630 PRO0255Q9UI72 69 aa8.31□□□□□ -1.08
LIG3-213ENST00000590630 DNAH6Q9C0G6 4158 aa8.3□□□□□ -1.08
LIG3-213ENST00000590630 TRAV4A0A0B4J268 109 aa8.3□□□□□ -1.08
LIG3-213ENST00000590630 KRBOX1C9JBD0 128 aa8.3□□□□□ -1.08
LIG3-213ENST00000590630 IGHV3-53P01767 116 aa8.3□□□□□ -1.08
LIG3-213ENST00000590630 FAM3BP58499 235 aaPredicted RBP8.3□□□□□ -1.08
LIG3-213ENST00000590630 LINC01559Q495D7 138 aa8.3□□□□□ -1.08
LIG3-213ENST00000590630 DNLZQ5SXM8 178 aa8.3□□□□□ -1.08
LIG3-213ENST00000590630 LYPD6BQ8NI32 183 aa8.3□□□□□ -1.08
LIG3-213ENST00000590630 DERL1Q9BUN8 251 aa8.3□□□□□ -1.08
LIG3-213ENST00000590630 IL36BQ9NZH7 164 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms