RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 TYMSP04818 313 aa7.96□□□□□ -1.14
LIG3-209ENST00000586435 GATA1P15976 413 aaPredicted RBP7.96□□□□□ -1.14
LIG3-209ENST00000586435 LRRC37A5PQ49AS3 106 aa7.96□□□□□ -1.14
LIG3-209ENST00000586435 FFAR4Q5NUL3 377 aa7.96□□□□□ -1.14
LIG3-209ENST00000586435 FAM74A1Q5RGS3 127 aa7.96□□□□□ -1.14
LIG3-209ENST00000586435 KCNS1Q96KK3 526 aa7.96□□□□□ -1.14
LIG3-209ENST00000586435 NAGKQ9UJ70 344 aa7.96□□□□□ -1.14
LIG3-209ENST00000586435 IBA57-AS1B1ANH7 110 aa7.95□□□□□ -1.14
LIG3-209ENST00000586435 GNRH2O43555 120 aa7.95□□□□□ -1.14
LIG3-209ENST00000586435 CIDEAO60543 219 aa7.95□□□□□ -1.14
LIG3-209ENST00000586435 SMR3BP02814 79 aaPredicted RBP7.95□□□□□ -1.14
LIG3-209ENST00000586435 PPT1P50897 306 aa7.95□□□□□ -1.14
LIG3-209ENST00000586435 PQLC2Q6ZP29 291 aa7.95□□□□□ -1.14
LIG3-209ENST00000586435 Q6ZSN1 163 aa7.95□□□□□ -1.14
LIG3-209ENST00000586435 NHLRC2Q8NBF2 726 aa7.95□□□□□ -1.14
LIG3-209ENST00000586435 CMTM2Q8TAZ6 248 aa7.95□□□□□ -1.14
LIG3-209ENST00000586435 SDF2L1Q9HCN8 221 aa7.95□□□□□ -1.14
LIG3-209ENST00000586435 HSPB11Q9Y547 144 aa7.95□□□□□ -1.14
LIG3-209ENST00000586435 TRAV8-6A0A0B4J262 113 aa7.94□□□□□ -1.14
LIG3-209ENST00000586435 PGPA6NDG6 321 aa7.94□□□□□ -1.14
LIG3-209ENST00000586435 FBLL1A6NHQ2 334 aaKnown RBP7.94□□□□□ -1.14
LIG3-209ENST00000586435 C1QBP02746 253 aa7.94□□□□□ -1.14
LIG3-209ENST00000586435 PFN1P07737 140 aaKnown RBP7.94□□□□□ -1.14
LIG3-209ENST00000586435 GOLT1AQ6ZVE7 132 aa7.94□□□□□ -1.14
LIG3-209ENST00000586435 Q8N814 137 aa7.94□□□□□ -1.14
LIG3-209ENST00000586435 ENKURQ8TC29 256 aa7.94□□□□□ -1.14
LIG3-209ENST00000586435 PPP1R1CQ8WVI7 109 aa7.94□□□□□ -1.14
LIG3-209ENST00000586435 TVP23CQ96ET8 276 aa7.94□□□□□ -1.14
LIG3-209ENST00000586435 HYLS1Q96M11 299 aa7.94□□□□□ -1.14
LIG3-209ENST00000586435 SRRM2Q9UQ35 2752 aaKnown RBP7.93□□□□□ -1.14
LIG3-209ENST00000586435 TRBV6-4A0A1B0GX49 114 aa7.93□□□□□ -1.14
LIG3-209ENST00000586435 PET100P0DJ07 73 aa7.93□□□□□ -1.14
LIG3-209ENST00000586435 H2BFSP57053 126 aa7.93□□□□□ -1.14
LIG3-209ENST00000586435 LAGE3Q14657 143 aa7.93□□□□□ -1.14
LIG3-209ENST00000586435 RHOHQ15669 191 aa7.93□□□□□ -1.14
LIG3-209ENST00000586435 SLC25A29Q8N8R3 303 aa7.93□□□□□ -1.14
LIG3-209ENST00000586435 SCGB1C1Q8TD33 95 aa7.93□□□□□ -1.14
LIG3-209ENST00000586435 S100ZQ8WXG8 99 aa7.93□□□□□ -1.14
LIG3-209ENST00000586435 PRADC1Q9BSG0 188 aa7.93□□□□□ -1.14
LIG3-209ENST00000586435 TREM1Q9NP99 234 aa7.93□□□□□ -1.14
LIG3-209ENST00000586435 MBD2Q9UBB5 411 aa7.93□□□□□ -1.14
LIG3-209ENST00000586435 RPH3ALQ9UNE2 315 aa7.93□□□□□ -1.14
LIG3-209ENST00000586435 TRAV8-1A0A0A6YYK1 113 aa7.92□□□□□ -1.14
LIG3-209ENST00000586435 SERTM2A0A1B0GWG4 89 aa7.92□□□□□ -1.14
LIG3-209ENST00000586435 F6UZH7 168 aa7.92□□□□□ -1.14
LIG3-209ENST00000586435 RS1O15537 224 aa7.92□□□□□ -1.14
LIG3-209ENST00000586435 MPC2O95563 127 aa7.92□□□□□ -1.14
LIG3-209ENST00000586435 HAMPP81172 84 aa7.92□□□□□ -1.14
LIG3-209ENST00000586435 OR10J3Q5JRS4 329 aa7.92□□□□□ -1.14
LIG3-209ENST00000586435 LELP1Q5T871 98 aa7.92□□□□□ -1.14
LIG3-209ENST00000586435 ASB13Q8WXK3 278 aa7.92□□□□□ -1.14
LIG3-209ENST00000586435 RPL12P30050 165 aaKnown RBP7.91□□□□□ -1.14
LIG3-209ENST00000586435 ACOT6Q3I5F7 207 aaPredicted RBP7.91□□□□□ -1.14
LIG3-209ENST00000586435 ZNF876PQ49A33 203 aa7.91□□□□□ -1.14
LIG3-209ENST00000586435 CFAP126Q5VTH2 177 aa7.91□□□□□ -1.14
LIG3-209ENST00000586435 PTH2Q96A98 100 aa7.91□□□□□ -1.14
LIG3-209ENST00000586435 C9orf85Q96MD7 179 aa7.91□□□□□ -1.14
LIG3-209ENST00000586435 NDFIP1Q9BT67 221 aa7.91□□□□□ -1.14
LIG3-209ENST00000586435 Q9HAA7 133 aa7.91□□□□□ -1.14
LIG3-209ENST00000586435 A0A1W2PPV4 95 aa7.9□□□□□ -1.14
LIG3-209ENST00000586435 INMT-MINDY4F8WBC2 141 aa7.9□□□□□ -1.14
LIG3-209ENST00000586435 EIF3GO75821 320 aaKnown RBP eCLIP7.9□□□□□ -1.14
LIG3-209ENST00000586435 UPK1BO75841 260 aa7.9□□□□□ -1.14
LIG3-209ENST00000586435 MGST1P10620 155 aaKnown RBP7.9□□□□□ -1.14
LIG3-209ENST00000586435 GNG5P63218 68 aa7.9□□□□□ -1.14
LIG3-209ENST00000586435 DPPA3Q6W0C5 159 aa7.9□□□□□ -1.14
LIG3-209ENST00000586435 Q6ZSA8 131 aa7.9□□□□□ -1.14
LIG3-209ENST00000586435 TM2D2Q9BX73 214 aa7.9□□□□□ -1.14
LIG3-209ENST00000586435 SMIM3Q9BZL3 60 aa7.9□□□□□ -1.14
LIG3-209ENST00000586435 GTSF1LQ9H1H1 148 aa7.9□□□□□ -1.14
LIG3-209ENST00000586435 FAM30AQ9NZY2 134 aa7.9□□□□□ -1.14
LIG3-209ENST00000586435 TAAR5O14804 337 aa7.89□□□□□ -1.15
LIG3-209ENST00000586435 IGHV3-30P01768 117 aa7.89□□□□□ -1.15
LIG3-209ENST00000586435 IGHV3-33P01772 117 aa7.89□□□□□ -1.15
LIG3-209ENST00000586435 IGHV3-30-3P0DP02 117 aa7.89□□□□□ -1.15
LIG3-209ENST00000586435 IGHV3-30-5P0DP03 117 aa7.89□□□□□ -1.15
LIG3-209ENST00000586435 RAB2AP61019 212 aa7.89□□□□□ -1.15
LIG3-209ENST00000586435 C5orf17Q8NAS9 161 aa7.89□□□□□ -1.15
LIG3-209ENST00000586435 ATP6V0E2Q8NHE4 81 aa7.89□□□□□ -1.15
LIG3-209ENST00000586435 MARVELD1Q9BSK0 173 aa7.89□□□□□ -1.15
LIG3-209ENST00000586435 SH3BGRL3Q9H299 93 aa7.89□□□□□ -1.15
LIG3-209ENST00000586435 C11orf21Q9P2W6 132 aa7.89□□□□□ -1.15
LIG3-209ENST00000586435 DNAH8Q96JB1 4490 aa7.88□□□□□ -1.15
LIG3-209ENST00000586435 TCRAP04437 139 aa7.88□□□□□ -1.15
LIG3-209ENST00000586435 ARL14EPLP0DKL9 152 aa7.88□□□□□ -1.15
LIG3-209ENST00000586435 LINC00694P0DN24 101 aa7.88□□□□□ -1.15
LIG3-209ENST00000586435 ZNF80P51504 273 aaPredicted RBP7.88□□□□□ -1.15
LIG3-209ENST00000586435 ZNF506Q5JVG8 444 aa7.88□□□□□ -1.15
LIG3-209ENST00000586435 SUN5Q8TC36 379 aa7.88□□□□□ -1.15
LIG3-209ENST00000586435 WFDC1Q9HC57 220 aa7.88□□□□□ -1.15
LIG3-209ENST00000586435 TRAV8-3A0A0A6YYJ7 113 aa7.87□□□□□ -1.15
LIG3-209ENST00000586435 PGPEP1LA6NFU8 196 aa7.87□□□□□ -1.15
LIG3-209ENST00000586435 K7EQM0 130 aa7.87□□□□□ -1.15
LIG3-209ENST00000586435 GCGP01275 180 aa7.87□□□□□ -1.15
LIG3-209ENST00000586435 PLA2G1BP04054 148 aaKnown RBP7.87□□□□□ -1.15
LIG3-209ENST00000586435 STAG3L2P0CL84 134 aa7.87□□□□□ -1.15
LIG3-209ENST00000586435 STAG3L3P0CL85 134 aa7.87□□□□□ -1.15
LIG3-209ENST00000586435 RNASE3P12724 160 aaKnown RBP7.87□□□□□ -1.15
LIG3-209ENST00000586435 CDC34P49427 236 aaPredicted RBP7.87□□□□□ -1.15
LIG3-209ENST00000586435 IFITM3Q01628 133 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms