RNA–Protein interactions for RNA: ENST00000584760.1

SREBF1-223, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-223	ENST00000584760	C8orf49	Q96NF6	230 aa		9.23	□□□□□ -0.93
SREBF1-223	ENST00000584760	MAP1LC3B	Q9GZQ8	125 aa		9.23	□□□□□ -0.93
SREBF1-223	ENST00000584760	PSG8	Q9UQ74	426 aa		9.23	□□□□□ -0.93
SREBF1-223	ENST00000584760	PKHD1	P08F94	4074 aa		9.23	□□□□□ -0.93
SREBF1-223	ENST00000584760	IGHV3-16	A0A0C4DH30	117 aa		9.22	□□□□□ -0.93
SREBF1-223	ENST00000584760	FBLL1	A6NHQ2	334 aa	Known RBP	9.22	□□□□□ -0.93
SREBF1-223	ENST00000584760	FAM74A7	A6NL05	159 aa		9.22	□□□□□ -0.93
SREBF1-223	ENST00000584760	TYMS	P04818	313 aa		9.22	□□□□□ -0.93
SREBF1-223	ENST00000584760	ZNF80	P51504	273 aa	Predicted RBP	9.22	□□□□□ -0.93
SREBF1-223	ENST00000584760	UBE2G2	P60604	165 aa		9.22	□□□□□ -0.93
SREBF1-223	ENST00000584760	RASL10A	Q92737	203 aa		9.22	□□□□□ -0.93
SREBF1-223	ENST00000584760	SPX	Q9BT56	116 aa		9.22	□□□□□ -0.93
SREBF1-223	ENST00000584760	PKD1	P98161	4303 aa		9.21	□□□□□ -0.93
SREBF1-223	ENST00000584760		A0A096LPF7	62 aa		9.21	□□□□□ -0.94
SREBF1-223	ENST00000584760		A0A0D9SG52	128 aa		9.21	□□□□□ -0.94
SREBF1-223	ENST00000584760	BCL2L11	O43521	198 aa		9.21	□□□□□ -0.94
SREBF1-223	ENST00000584760	GNRH2	O43555	120 aa		9.21	□□□□□ -0.94
SREBF1-223	ENST00000584760	GCG	P01275	180 aa		9.21	□□□□□ -0.94
SREBF1-223	ENST00000584760	IGHV3-53	P01767	116 aa		9.21	□□□□□ -0.94
SREBF1-223	ENST00000584760	FHIT	P49789	147 aa		9.21	□□□□□ -0.94
SREBF1-223	ENST00000584760	PRNT	Q86SH4	94 aa		9.21	□□□□□ -0.94
SREBF1-223	ENST00000584760	LINC00479	Q96M42	142 aa		9.21	□□□□□ -0.94
SREBF1-223	ENST00000584760	SDF2L1	Q9HCN8	221 aa		9.21	□□□□□ -0.94
SREBF1-223	ENST00000584760	C11orf21	Q9P2W6	132 aa		9.21	□□□□□ -0.94
SREBF1-223	ENST00000584760	DNAH11	Q96DT5	4516 aa		9.21	□□□□□ -0.94
SREBF1-223	ENST00000584760	DYNC1H1	Q14204	4646 aa	Known RBP	9.2	□□□□□ -0.94
SREBF1-223	ENST00000584760	PEX7	O00628	323 aa		9.2	□□□□□ -0.94
SREBF1-223	ENST00000584760	PFN1	P07737	140 aa	Known RBP	9.2	□□□□□ -0.94
SREBF1-223	ENST00000584760	SEC11B	P0C7V7	166 aa		9.2	□□□□□ -0.94
SREBF1-223	ENST00000584760	FHL2	Q14192	279 aa		9.2	□□□□□ -0.94
SREBF1-223	ENST00000584760	ESRG	Q1W209	222 aa		9.2	□□□□□ -0.94
SREBF1-223	ENST00000584760	KCNS1	Q96KK3	526 aa		9.2	□□□□□ -0.94
SREBF1-223	ENST00000584760	UPK3B	Q9BT76	320 aa		9.2	□□□□□ -0.94
SREBF1-223	ENST00000584760	TRAV34	A0A0B4J273	112 aa		9.19	□□□□□ -0.94
SREBF1-223	ENST00000584760	NBDY	A0A0U1RRE5	68 aa		9.19	□□□□□ -0.94
SREBF1-223	ENST00000584760	KANTR	A0A1W2PQU2	76 aa		9.19	□□□□□ -0.94
SREBF1-223	ENST00000584760	IFNA7	P01567	189 aa		9.19	□□□□□ -0.94
SREBF1-223	ENST00000584760	SFTA3	P0C7M3	94 aa		9.19	□□□□□ -0.94
SREBF1-223	ENST00000584760	CRYBA4	P53673	196 aa		9.19	□□□□□ -0.94
SREBF1-223	ENST00000584760	ZFP69	Q49AA0	526 aa		9.19	□□□□□ -0.94
SREBF1-223	ENST00000584760	SMUG1	Q53HV7	270 aa		9.19	□□□□□ -0.94
SREBF1-223	ENST00000584760	SOHLH1	Q5JUK2	328 aa		9.19	□□□□□ -0.94
SREBF1-223	ENST00000584760		Q86TA4	180 aa		9.19	□□□□□ -0.94
SREBF1-223	ENST00000584760	ZNF471	Q9BX82	626 aa	Predicted RBP	9.19	□□□□□ -0.94
SREBF1-223	ENST00000584760	NKX6-2	Q9C056	277 aa	Predicted RBP	9.19	□□□□□ -0.94
SREBF1-223	ENST00000584760	PRO0255	Q9UI72	69 aa		9.19	□□□□□ -0.94
SREBF1-223	ENST00000584760	MRPS16	Q9Y3D3	137 aa	Known RBP	9.19	□□□□□ -0.94
SREBF1-223	ENST00000584760	ARL2-SNX15	V9GYD0	113 aa		9.19	□□□□□ -0.94
SREBF1-223	ENST00000584760	UMAD1	C9J7I0	102 aa		9.18	□□□□□ -0.94
SREBF1-223	ENST00000584760		M0R2P5	195 aa		9.18	□□□□□ -0.94
SREBF1-223	ENST00000584760	PAX4	O43316	350 aa		9.18	□□□□□ -0.94
SREBF1-223	ENST00000584760	SLA	Q13239	276 aa		9.18	□□□□□ -0.94
SREBF1-223	ENST00000584760	SAPCD1	Q5SSQ6	148 aa		9.18	□□□□□ -0.94
SREBF1-223	ENST00000584760	C1orf134	Q5TEV5	83 aa		9.18	□□□□□ -0.94
SREBF1-223	ENST00000584760	MAPKAPK5-AS1	Q8N8E1	139 aa		9.18	□□□□□ -0.94
SREBF1-223	ENST00000584760	HIST1H2BA	Q96A08	127 aa		9.18	□□□□□ -0.94
SREBF1-223	ENST00000584760	ZNF479	Q96JC4	524 aa		9.18	□□□□□ -0.94
SREBF1-223	ENST00000584760	HHLA3	Q9XRX5	114 aa		9.18	□□□□□ -0.94
SREBF1-223	ENST00000584760	TRAV4	A0A0B4J268	109 aa		9.17	□□□□□ -0.94
SREBF1-223	ENST00000584760	PPT1	P50897	306 aa		9.17	□□□□□ -0.94
SREBF1-223	ENST00000584760	TMUB2	Q71RG4	321 aa		9.17	□□□□□ -0.94
SREBF1-223	ENST00000584760	STOML3	Q8TAV4	291 aa		9.17	□□□□□ -0.94
SREBF1-223	ENST00000584760	FAM213B	Q8TBF2	198 aa		9.17	□□□□□ -0.94
SREBF1-223	ENST00000584760	MBD3L1	Q8WWY6	194 aa		9.17	□□□□□ -0.94
SREBF1-223	ENST00000584760	C9orf85	Q96MD7	179 aa		9.17	□□□□□ -0.94
SREBF1-223	ENST00000584760	ICOS	Q9Y6W8	199 aa		9.17	□□□□□ -0.94
SREBF1-223	ENST00000584760	TRGV4	A0A0C4DH28	118 aa		9.16	□□□□□ -0.94
SREBF1-223	ENST00000584760	TCTE3	Q8IZS6	198 aa		9.16	□□□□□ -0.94
SREBF1-223	ENST00000584760	TCEAL7	Q9BRU2	100 aa		9.16	□□□□□ -0.94
SREBF1-223	ENST00000584760	KRTAP1-5	Q9BYS1	174 aa		9.16	□□□□□ -0.94
SREBF1-223	ENST00000584760		Q9H8V8	135 aa		9.16	□□□□□ -0.94
SREBF1-223	ENST00000584760	IGKV3D-20	A0A0C4DH25	116 aa		9.15	□□□□□ -0.94
SREBF1-223	ENST00000584760	C16orf90	A8MZG2	172 aa		9.15	□□□□□ -0.94
SREBF1-223	ENST00000584760	PFDN1	O60925	122 aa		9.15	□□□□□ -0.94
SREBF1-223	ENST00000584760	RNASE3	P12724	160 aa	Known RBP	9.15	□□□□□ -0.94
SREBF1-223	ENST00000584760	TPT1	P13693	172 aa	Known RBP	9.15	□□□□□ -0.94
SREBF1-223	ENST00000584760	EIF5A	P63241	154 aa	Known RBP	9.15	□□□□□ -0.94
SREBF1-223	ENST00000584760	CST9LP1	Q5W188	147 aa		9.15	□□□□□ -0.94
SREBF1-223	ENST00000584760	DPPA3	Q6W0C5	159 aa		9.15	□□□□□ -0.94
SREBF1-223	ENST00000584760	COX8C	Q7Z4L0	72 aa		9.15	□□□□□ -0.94
SREBF1-223	ENST00000584760	SFT2D1	Q8WV19	159 aa		9.15	□□□□□ -0.94
SREBF1-223	ENST00000584760	TRBV6-1	A0A0K0K1D8	114 aa		9.14	□□□□□ -0.95
SREBF1-223	ENST00000584760	PAGE4	O60829	102 aa		9.14	□□□□□ -0.95
SREBF1-223	ENST00000584760	CDK2AP2	O75956	126 aa		9.14	□□□□□ -0.95
SREBF1-223	ENST00000584760	MRPL23	Q16540	153 aa	Known RBP	9.14	□□□□□ -0.95
SREBF1-223	ENST00000584760		Q6ZNX1	250 aa		9.14	□□□□□ -0.95
SREBF1-223	ENST00000584760	C6orf223	Q8N319	242 aa		9.14	□□□□□ -0.95
SREBF1-223	ENST00000584760	OR4C5	Q8NGB2	326 aa		9.14	□□□□□ -0.95
SREBF1-223	ENST00000584760	ZC2HC1A	Q96GY0	325 aa		9.14	□□□□□ -0.95
SREBF1-223	ENST00000584760	FMC1	Q96HJ9	113 aa		9.14	□□□□□ -0.95
SREBF1-223	ENST00000584760		A0A1B0GV50	99 aa		9.13	□□□□□ -0.95
SREBF1-223	ENST00000584760		K7EQD1	137 aa		9.13	□□□□□ -0.95
SREBF1-223	ENST00000584760	CRIP1	P50238	77 aa		9.13	□□□□□ -0.95
SREBF1-223	ENST00000584760	LGALSL	Q3ZCW2	172 aa	Predicted RBP	9.13	□□□□□ -0.95
SREBF1-223	ENST00000584760	ZNF876P	Q49A33	203 aa		9.13	□□□□□ -0.95
SREBF1-223	ENST00000584760	TTC32	Q5I0X7	151 aa		9.13	□□□□□ -0.95
SREBF1-223	ENST00000584760	NEGR1	Q7Z3B1	354 aa		9.13	□□□□□ -0.95
SREBF1-223	ENST00000584760	ZFP30	Q9Y2G7	519 aa		9.13	□□□□□ -0.95
SREBF1-223	ENST00000584760		A0A1W2PPQ1	181 aa		9.12	□□□□□ -0.95
SREBF1-223	ENST00000584760	FABP5P3	A8MUU1	101 aa		9.12	□□□□□ -0.95

Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms