RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 TXNDC17Q9BRA2 123 aa9.35□□□□□ -0.91
CCDC40-216ENST00000576241 TREM1Q9NP99 234 aa9.35□□□□□ -0.91
CCDC40-216ENST00000576241 LY96Q9Y6Y9 160 aa9.35□□□□□ -0.91
CCDC40-216ENST00000576241 FLG2Q5D862 2391 aaPredicted RBP9.34□□□□□ -0.91
CCDC40-216ENST00000576241 TRAV4A0A0B4J268 109 aa9.34□□□□□ -0.91
CCDC40-216ENST00000576241 F6UZH7 168 aa9.34□□□□□ -0.91
CCDC40-216ENST00000576241 M0R2P5 195 aa9.34□□□□□ -0.91
CCDC40-216ENST00000576241 HMGB3O15347 200 aaKnown RBP9.34□□□□□ -0.91
CCDC40-216ENST00000576241 OR4C5Q8NGB2 326 aa9.34□□□□□ -0.91
CCDC40-216ENST00000576241 KCNS1Q96KK3 526 aa9.34□□□□□ -0.91
CCDC40-216ENST00000576241 NDFIP1Q9BT67 221 aa9.34□□□□□ -0.91
CCDC40-216ENST00000576241 SDF2L1Q9HCN8 221 aa9.34□□□□□ -0.91
CCDC40-216ENST00000576241 TRAV8-1A0A0A6YYK1 113 aa9.33□□□□□ -0.92
CCDC40-216ENST00000576241 IGHV3-16A0A0C4DH30 117 aa9.33□□□□□ -0.92
CCDC40-216ENST00000576241 SERTM2A0A1B0GWG4 89 aa9.33□□□□□ -0.92
CCDC40-216ENST00000576241 K7EP13 123 aa9.33□□□□□ -0.92
CCDC40-216ENST00000576241 GNRH2O43555 120 aa9.33□□□□□ -0.92
CCDC40-216ENST00000576241 ARL14EPLP0DKL9 152 aa9.33□□□□□ -0.92
CCDC40-216ENST00000576241 EVI2AP22794 236 aa9.33□□□□□ -0.92
CCDC40-216ENST00000576241 CDC34P49427 236 aaPredicted RBP9.33□□□□□ -0.92
CCDC40-216ENST00000576241 GNG5P63218 68 aa9.33□□□□□ -0.92
CCDC40-216ENST00000576241 PGPEP1Q9NXJ5 209 aa9.33□□□□□ -0.92
CCDC40-216ENST00000576241 K7EQM0 130 aa9.32□□□□□ -0.92
CCDC40-216ENST00000576241 SH2D6Q7Z4S9 175 aa9.32□□□□□ -0.92
CCDC40-216ENST00000576241 WFDC10BQ8IUB3 73 aa9.32□□□□□ -0.92
CCDC40-216ENST00000576241 HSD17B11Q8NBQ5 300 aa9.32□□□□□ -0.92
CCDC40-216ENST00000576241 ASB13Q8WXK3 278 aa9.32□□□□□ -0.92
CCDC40-216ENST00000576241 ALG5Q9Y673 324 aa9.32□□□□□ -0.92
CCDC40-216ENST00000576241 TYMSP04818 313 aa9.31□□□□□ -0.92
CCDC40-216ENST00000576241 C5orf17Q8NAS9 161 aa9.31□□□□□ -0.92
CCDC40-216ENST00000576241 OR2G3Q8NGZ4 309 aa9.31□□□□□ -0.92
CCDC40-216ENST00000576241 TVP23CQ96ET8 276 aa9.31□□□□□ -0.92
CCDC40-216ENST00000576241 MSRB1Q9NZV6 116 aa9.31□□□□□ -0.92
CCDC40-216ENST00000576241 TNFRSF18Q9Y5U5 241 aa9.31□□□□□ -0.92
CCDC40-216ENST00000576241 MBP02144 154 aa9.3□□□□□ -0.92
CCDC40-216ENST00000576241 STAG3L2P0CL84 134 aa9.3□□□□□ -0.92
CCDC40-216ENST00000576241 STAG3L3P0CL85 134 aa9.3□□□□□ -0.92
CCDC40-216ENST00000576241 GCHFRP30047 84 aa9.3□□□□□ -0.92
CCDC40-216ENST00000576241 ZFP69Q49AA0 526 aa9.3□□□□□ -0.92
CCDC40-216ENST00000576241 CDPF1Q6NVV7 123 aa9.3□□□□□ -0.92
CCDC40-216ENST00000576241 NHLRC2Q8NBF2 726 aa9.3□□□□□ -0.92
CCDC40-216ENST00000576241 RAB24Q969Q5 203 aa9.3□□□□□ -0.92
CCDC40-216ENST00000576241 AQP10Q96PS8 301 aa9.3□□□□□ -0.92
CCDC40-216ENST00000576241 PSMG3Q9BT73 122 aaPredicted RBP9.3□□□□□ -0.92
CCDC40-216ENST00000576241 FBLL1A6NHQ2 334 aaKnown RBP9.29□□□□□ -0.92
CCDC40-216ENST00000576241 TAAR5O14804 337 aa9.29□□□□□ -0.92
CCDC40-216ENST00000576241 TCRAP04437 139 aa9.29□□□□□ -0.92
CCDC40-216ENST00000576241 DNAH10OSP0CZ25 163 aa9.29□□□□□ -0.92
CCDC40-216ENST00000576241 PPT1P50897 306 aa9.29□□□□□ -0.92
CCDC40-216ENST00000576241 SERF2P84101 59 aa9.29□□□□□ -0.92
CCDC40-216ENST00000576241 ZNF876PQ49A33 203 aa9.29□□□□□ -0.92
CCDC40-216ENST00000576241 C10orf126Q8N4M7 172 aa9.29□□□□□ -0.92
CCDC40-216ENST00000576241 SGK494Q96LW2 274 aa9.29□□□□□ -0.92
CCDC40-216ENST00000576241 MED28Q9H204 178 aa9.29□□□□□ -0.92
CCDC40-216ENST00000576241 TMEM167BQ9NRX6 74 aa9.29□□□□□ -0.92
CCDC40-216ENST00000576241 LOC100131303A0A0U1RQF7 123 aa9.28□□□□□ -0.92
CCDC40-216ENST00000576241 PTTG1O95997 202 aa9.28□□□□□ -0.92
CCDC40-216ENST00000576241 CXorf1O96002 111 aa9.28□□□□□ -0.92
CCDC40-216ENST00000576241 CRYGDP07320 174 aa9.28□□□□□ -0.92
CCDC40-216ENST00000576241 GATA1P15976 413 aaPredicted RBP9.28□□□□□ -0.92
CCDC40-216ENST00000576241 ATP6V0CP27449 155 aa9.28□□□□□ -0.92
CCDC40-216ENST00000576241 BATF3Q9NR55 127 aa9.28□□□□□ -0.92
CCDC40-216ENST00000576241 A0A087WTM6 91 aa9.27□□□□□ -0.93
CCDC40-216ENST00000576241 CIDEAO60543 219 aa9.27□□□□□ -0.93
CCDC40-216ENST00000576241 GCGP01275 180 aa9.27□□□□□ -0.93
CCDC40-216ENST00000576241 PFN1P07737 140 aaKnown RBP9.27□□□□□ -0.93
CCDC40-216ENST00000576241 FUSP35637 526 aaKnown RBP eCLIP9.27□□□□□ -0.93
CCDC40-216ENST00000576241 TIRAPP58753 221 aa9.27□□□□□ -0.93
CCDC40-216ENST00000576241 SMUG1Q53HV7 270 aa9.27□□□□□ -0.93
CCDC40-216ENST00000576241 CYB561D1Q8N8Q1 229 aa9.27□□□□□ -0.93
CCDC40-216ENST00000576241 SUN5Q8TC36 379 aa9.27□□□□□ -0.93
CCDC40-216ENST00000576241 PRADC1Q9BSG0 188 aa9.27□□□□□ -0.93
CCDC40-216ENST00000576241 ACTR3CQ9C0K3 210 aaPredicted RBP9.27□□□□□ -0.93
CCDC40-216ENST00000576241 EPDR1Q9UM22 224 aa9.27□□□□□ -0.93
CCDC40-216ENST00000576241 PSG8Q9UQ74 426 aa9.27□□□□□ -0.93
CCDC40-216ENST00000576241 FAT1Q14517 4588 aa9.27□□□□□ -0.93
CCDC40-216ENST00000576241 IGHV3-38A0A0C4DH36 116 aa9.26□□□□□ -0.93
CCDC40-216ENST00000576241 GGTLC3B5MD39 225 aa9.26□□□□□ -0.93
CCDC40-216ENST00000576241 ZNF80P51504 273 aaPredicted RBP9.26□□□□□ -0.93
CCDC40-216ENST00000576241 SUMO1P63165 101 aaKnown RBP9.26□□□□□ -0.93
CCDC40-216ENST00000576241 FLI1Q01543 452 aaPredicted RBP9.26□□□□□ -0.93
CCDC40-216ENST00000576241 RHOHQ15669 191 aa9.26□□□□□ -0.93
CCDC40-216ENST00000576241 PRNTQ86SH4 94 aa9.26□□□□□ -0.93
CCDC40-216ENST00000576241 SLC25A29Q8N8R3 303 aa9.26□□□□□ -0.93
CCDC40-216ENST00000576241 INO80EQ8NBZ0 244 aaPredicted RBP9.26□□□□□ -0.93
CCDC40-216ENST00000576241 SH3BGRL3Q9H299 93 aa9.26□□□□□ -0.93
CCDC40-216ENST00000576241 C11orf21Q9P2W6 132 aa9.26□□□□□ -0.93
CCDC40-216ENST00000576241 TNFSF18Q9UNG2 199 aa9.26□□□□□ -0.93
CCDC40-216ENST00000576241 BOLA1Q9Y3E2 137 aa9.26□□□□□ -0.93
CCDC40-216ENST00000576241 TRAV8-6A0A0B4J262 113 aa9.25□□□□□ -0.93
CCDC40-216ENST00000576241 TRBV6-4A0A1B0GX49 114 aa9.25□□□□□ -0.93
CCDC40-216ENST00000576241 RS1O15537 224 aa9.25□□□□□ -0.93
CCDC40-216ENST00000576241 PSCAO43653 123 aa9.25□□□□□ -0.93
CCDC40-216ENST00000576241 SAPCD1Q5SSQ6 148 aa9.25□□□□□ -0.93
CCDC40-216ENST00000576241 CFAP126Q5VTH2 177 aa9.25□□□□□ -0.93
CCDC40-216ENST00000576241 TMEM75Q8N9X5 138 aa9.25□□□□□ -0.93
CCDC40-216ENST00000576241 BORCS7-ASMTA0A0B4J1R7 106 aa9.24□□□□□ -0.93
CCDC40-216ENST00000576241 IGHV3-73A0A0B4J1V6 119 aa9.24□□□□□ -0.93
CCDC40-216ENST00000576241 IGLV2-11P01706 119 aa9.24□□□□□ -0.93
CCDC40-216ENST00000576241 GIPP09681 153 aaPredicted RBP9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms