RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 ZNF738Q8NE65 137 aa7.67□□□□□ -1.18
VPS53-220ENST00000576149 TP73-AS1Q9UF72 201 aa7.67□□□□□ -1.18
VPS53-220ENST00000576149 SPTAN1Q13813 2472 aaKnown RBP7.67□□□□□ -1.18
VPS53-220ENST00000576149 A0A0G2JLM5 398 aa7.66□□□□□ -1.18
VPS53-220ENST00000576149 GATA3P23771 443 aa7.66□□□□□ -1.18
VPS53-220ENST00000576149 FXYD7P58549 80 aa7.66□□□□□ -1.18
VPS53-220ENST00000576149 PRR9Q5T870 116 aa7.66□□□□□ -1.18
VPS53-220ENST00000576149 LINC00477Q96M19 166 aa7.66□□□□□ -1.18
VPS53-220ENST00000576149 IGHV4-4A0A075B6R2 117 aa7.66□□□□□ -1.18
VPS53-220ENST00000576149 OVOL1O14753 267 aa7.66□□□□□ -1.18
VPS53-220ENST00000576149 LGALS9BQ3B8N2 356 aa7.66□□□□□ -1.18
VPS53-220ENST00000576149 LGALS9CQ6DKI2 356 aa7.66□□□□□ -1.18
VPS53-220ENST00000576149 LCNL1Q6ZST4 164 aa7.66□□□□□ -1.18
VPS53-220ENST00000576149 NRGNQ92686 78 aa7.66□□□□□ -1.18
VPS53-220ENST00000576149 COL12A1Q99715 3063 aa7.65□□□□□ -1.18
VPS53-220ENST00000576149 EVI2AP22794 236 aa7.65□□□□□ -1.18
VPS53-220ENST00000576149 C5orf47Q569G3 176 aa7.65□□□□□ -1.18
VPS53-220ENST00000576149 ZFAND2AQ8N6M9 145 aa7.65□□□□□ -1.18
VPS53-220ENST00000576149 OR10J6PQ8NGY7 276 aa7.65□□□□□ -1.18
VPS53-220ENST00000576149 NXT2Q9NPJ8 142 aaKnown RBP7.65□□□□□ -1.18
VPS53-220ENST00000576149 ZNF580Q9UK33 172 aa7.65□□□□□ -1.18
VPS53-220ENST00000576149 DOPEY1Q5JWR5 2465 aa7.65□□□□□ -1.19
VPS53-220ENST00000576149 CFAP46Q8IYW2 2715 aa7.65□□□□□ -1.19
VPS53-220ENST00000576149 A0A1B0GV72 72 aa7.64□□□□□ -1.19
VPS53-220ENST00000576149 SLC25A16P16260 332 aa7.64□□□□□ -1.19
VPS53-220ENST00000576149 IFI27L1Q96BM0 104 aa7.64□□□□□ -1.19
VPS53-220ENST00000576149 K7EP13 123 aa7.64□□□□□ -1.19
VPS53-220ENST00000576149 GATA1P15976 413 aaPredicted RBP7.64□□□□□ -1.19
VPS53-220ENST00000576149 CACNG7P62955 275 aa7.64□□□□□ -1.19
VPS53-220ENST00000576149 RHPN1-AS1Q9BWJ2 59 aa7.64□□□□□ -1.19
VPS53-220ENST00000576149 COX8AP10176 69 aa7.63□□□□□ -1.19
VPS53-220ENST00000576149 MPV17L2Q567V2 206 aa7.63□□□□□ -1.19
VPS53-220ENST00000576149 LINC01356Q8N9X3 169 aa7.63□□□□□ -1.19
VPS53-220ENST00000576149 FAM19A4Q96LR4 140 aa7.63□□□□□ -1.19
VPS53-220ENST00000576149 DAZ1Q9NQZ3 744 aaKnown RBP7.63□□□□□ -1.19
VPS53-220ENST00000576149 CELSR1Q9NYQ6 3014 aa7.63□□□□□ -1.19
VPS53-220ENST00000576149 TRAV26-1A0A087WT03 109 aa7.63□□□□□ -1.19
VPS53-220ENST00000576149 ZNF561-AS1K7EIQ3 104 aa7.63□□□□□ -1.19
VPS53-220ENST00000576149 FCER1GP30273 86 aa7.63□□□□□ -1.19
VPS53-220ENST00000576149 SEC61GP60059 68 aa7.63□□□□□ -1.19
VPS53-220ENST00000576149 RPL11P62913 178 aaKnown RBP7.63□□□□□ -1.19
VPS53-220ENST00000576149 SPANXN1Q5VSR9 72 aa7.63□□□□□ -1.19
VPS53-220ENST00000576149 OR2K2Q8NGT1 345 aa7.63□□□□□ -1.19
VPS53-220ENST00000576149 IGLV2-18A0A075B6J9 118 aa7.62□□□□□ -1.19
VPS53-220ENST00000576149 A0A096LNT2 108 aa7.62□□□□□ -1.19
VPS53-220ENST00000576149 TRAV21A0A0B4J279 112 aa7.62□□□□□ -1.19
VPS53-220ENST00000576149 H3BVH4 76 aa7.62□□□□□ -1.19
VPS53-220ENST00000576149 K7EMT4 169 aa7.62□□□□□ -1.19
VPS53-220ENST00000576149 IGHV4-59P01825 116 aa7.62□□□□□ -1.19
VPS53-220ENST00000576149 LEPP41159 167 aa7.62□□□□□ -1.19
VPS53-220ENST00000576149 DEFB1P60022 68 aa7.62□□□□□ -1.19
VPS53-220ENST00000576149 DEFB112Q30KQ8 113 aa7.62□□□□□ -1.19
VPS53-220ENST00000576149 DEFB125Q8N687 156 aa7.62□□□□□ -1.19
VPS53-220ENST00000576149 Q8N8P6 123 aa7.62□□□□□ -1.19
VPS53-220ENST00000576149 NRACQ8N912 160 aa7.62□□□□□ -1.19
VPS53-220ENST00000576149 NUDT3O95989 172 aa7.62□□□□□ -1.19
VPS53-220ENST00000576149 PSMB8P28062 276 aa7.62□□□□□ -1.19
VPS53-220ENST00000576149 RNF151Q2KHN1 245 aa7.62□□□□□ -1.19
VPS53-220ENST00000576149 APRG1Q8IVJ8 170 aa7.62□□□□□ -1.19
VPS53-220ENST00000576149 OR1N2Q8NGR9 330 aa7.62□□□□□ -1.19
VPS53-220ENST00000576149 ORAOV1Q8WV07 137 aa7.62□□□□□ -1.19
VPS53-220ENST00000576149 UFC1Q9Y3C8 167 aa7.62□□□□□ -1.19
VPS53-220ENST00000576149 IGKV3-7A0A075B6H7 116 aa7.61□□□□□ -1.19
VPS53-220ENST00000576149 BVES-AS1Q5T3Y7 98 aa7.61□□□□□ -1.19
VPS53-220ENST00000576149 C12orf54Q6X4T0 127 aa7.61□□□□□ -1.19
VPS53-220ENST00000576149 LRRC75A-AS1Q8N1F1 130 aa7.61□□□□□ -1.19
VPS53-220ENST00000576149 TRAV26-2A0A0B4J265 109 aa7.61□□□□□ -1.19
VPS53-220ENST00000576149 F6UB75 175 aa7.61□□□□□ -1.19
VPS53-220ENST00000576149 J3QLI3 93 aa7.61□□□□□ -1.19
VPS53-220ENST00000576149 MRPL23Q16540 153 aaKnown RBP7.61□□□□□ -1.19
VPS53-220ENST00000576149 C2orf91Q6ZV80 131 aa7.61□□□□□ -1.19
VPS53-220ENST00000576149 WFDC3Q8IUB2 231 aa7.61□□□□□ -1.19
VPS53-220ENST00000576149 C18orf15Q96N68 181 aa7.61□□□□□ -1.19
VPS53-220ENST00000576149 COX11Q9Y6N1 276 aa7.61□□□□□ -1.19
VPS53-220ENST00000576149 IGSF10Q6WRI0 2623 aa7.61□□□□□ -1.19
VPS53-220ENST00000576149 SPG11Q96JI7 2443 aa7.61□□□□□ -1.19
VPS53-220ENST00000576149 FGF6P10767 208 aa7.6□□□□□ -1.19
VPS53-220ENST00000576149 Q6ZVH6 145 aa7.6□□□□□ -1.19
VPS53-220ENST00000576149 VPS25Q9BRG1 176 aa7.6□□□□□ -1.19
VPS53-220ENST00000576149 USP9XQ93008 2570 aaPredicted RBP7.6□□□□□ -1.19
VPS53-220ENST00000576149 EDN2P20800 178 aa7.6□□□□□ -1.19
VPS53-220ENST00000576149 ANXA2RQ3ZCQ2 193 aa7.6□□□□□ -1.19
VPS53-220ENST00000576149 TMEM158Q8WZ71 300 aa7.6□□□□□ -1.19
VPS53-220ENST00000576149 MRAP2Q96G30 205 aa7.6□□□□□ -1.19
VPS53-220ENST00000576149 DKK2Q9UBU2 259 aa7.6□□□□□ -1.19
VPS53-220ENST00000576149 TMEM89A2RUT3 159 aa7.59□□□□□ -1.19
VPS53-220ENST00000576149 PRB1P04280 392 aa7.59□□□□□ -1.19
VPS53-220ENST00000576149 MED14OSP0DP75 135 aa7.59□□□□□ -1.19
VPS53-220ENST00000576149 SRD5A1P18405 259 aa7.59□□□□□ -1.19
VPS53-220ENST00000576149 RNASE4P34096 147 aaKnown RBP7.59□□□□□ -1.19
VPS53-220ENST00000576149 ASIPP42127 132 aa7.59□□□□□ -1.19
VPS53-220ENST00000576149 KIR3DS1Q14943 382 aa7.59□□□□□ -1.19
VPS53-220ENST00000576149 CD5LO43866 347 aa7.59□□□□□ -1.19
VPS53-220ENST00000576149 S100A4P26447 101 aaKnown RBP7.59□□□□□ -1.19
VPS53-220ENST00000576149 SAMD13Q5VXD3 122 aa7.59□□□□□ -1.19
VPS53-220ENST00000576149 DCANP1Q8TF63 244 aa7.59□□□□□ -1.19
VPS53-220ENST00000576149 SELENOKQ9Y6D0 94 aa7.59□□□□□ -1.19
VPS53-220ENST00000576149 FLNCQ14315 2725 aa7.58□□□□□ -1.2
VPS53-220ENST00000576149 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.58□□□□□ -1.24e-6■■■■□ 20.9
VPS53-220ENST00000576149 A8MZ25 164 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms