RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 C5orf56Q8N8D9 126 aa11.92□□□□□ -0.5
NUP88-207ENST00000573584 SMIM2Q9BVW6 85 aa11.92□□□□□ -0.5
NUP88-207ENST00000573584 LINC00527Q9UJ94 153 aa11.92□□□□□ -0.5
NUP88-207ENST00000573584 RPL24P83731 157 aaKnown RBP11.92□□□□□ -0.5
NUP88-207ENST00000573584 TMEM219Q86XT9 240 aa11.92□□□□□ -0.5
NUP88-207ENST00000573584 C20orf173Q96LM9 149 aa11.92□□□□□ -0.5
NUP88-207ENST00000573584 KLK15Q9H2R5 256 aa11.92□□□□□ -0.5
NUP88-207ENST00000573584 M0R381 172 aa11.91□□□□□ -0.5
NUP88-207ENST00000573584 NPFFO15130 113 aa11.91□□□□□ -0.5
NUP88-207ENST00000573584 KLRB1Q12918 225 aa11.91□□□□□ -0.5
NUP88-207ENST00000573584 SPTBN1Q01082 2364 aaKnown RBP11.91□□□□□ -0.5
NUP88-207ENST00000573584 SPRY2O43597 315 aa11.91□□□□□ -0.5
NUP88-207ENST00000573584 C9orf139Q6ZV77 190 aa11.91□□□□□ -0.5
NUP88-207ENST00000573584 H7C1H1 209 aa11.9□□□□□ -0.5
NUP88-207ENST00000573584 GLMPQ8WWB7 406 aa11.9□□□□□ -0.5
NUP88-207ENST00000573584 LENEPQ9Y5L5 61 aa11.9□□□□□ -0.5
NUP88-207ENST00000573584 F8VRH5 84 aa11.9□□□□□ -0.5
NUP88-207ENST00000573584 ITLN2Q8WWU7 325 aaPredicted RBP11.9□□□□□ -0.5
NUP88-207ENST00000573584 SCGB3A1Q96QR1 104 aa11.9□□□□□ -0.5
NUP88-207ENST00000573584 HIST1H4GQ99525 98 aa11.9□□□□□ -0.5
NUP88-207ENST00000573584 TRAV12-1A0A0B4J245 112 aa11.9□□□□□ -0.51
NUP88-207ENST00000573584 TRAV41A0A0B4J266 112 aa11.9□□□□□ -0.51
NUP88-207ENST00000573584 S100A4P26447 101 aaKnown RBP11.9□□□□□ -0.51
NUP88-207ENST00000573584 SUMO2P61956 95 aaKnown RBP11.9□□□□□ -0.51
NUP88-207ENST00000573584 TAL2Q16559 108 aa11.9□□□□□ -0.51
NUP88-207ENST00000573584 ORMDL2Q53FV1 153 aa11.9□□□□□ -0.51
NUP88-207ENST00000573584 UBTD1Q9HAC8 227 aa11.9□□□□□ -0.51
NUP88-207ENST00000573584 ATRXP46100 2492 aa11.89□□□□□ -0.51
NUP88-207ENST00000573584 IGLL5B9A064 214 aa11.89□□□□□ -0.51
NUP88-207ENST00000573584 E9PLD3 99 aa11.89□□□□□ -0.51
NUP88-207ENST00000573584 LMO4P61968 165 aa11.89□□□□□ -0.51
NUP88-207ENST00000573584 LINC00477Q96M19 166 aa11.89□□□□□ -0.51
NUP88-207ENST00000573584 BPESC1Q9GZL8 116 aa11.89□□□□□ -0.51
NUP88-207ENST00000573584 ARL3P36405 182 aa11.89□□□□□ -0.51
NUP88-207ENST00000573584 ZFHX3Q15911 3703 aa11.89□□□□□ -0.51
NUP88-207ENST00000573584 C12orf74Q32Q52 190 aa11.88□□□□□ -0.51
NUP88-207ENST00000573584 ZFAND2AQ8N6M9 145 aa11.88□□□□□ -0.51
NUP88-207ENST00000573584 C14orf178Q8N769 122 aaPredicted RBP11.88□□□□□ -0.51
NUP88-207ENST00000573584 OR10J6PQ8NGY7 276 aa11.88□□□□□ -0.51
NUP88-207ENST00000573584 RASL10AQ92737 203 aa11.88□□□□□ -0.51
NUP88-207ENST00000573584 CHTOPQ9Y3Y2 248 aaKnown RBP11.88□□□□□ -0.51
NUP88-207ENST00000573584 TRAV21A0A0B4J279 112 aa11.88□□□□□ -0.51
NUP88-207ENST00000573584 TEX48A0A1B0GUV7 120 aa11.88□□□□□ -0.51
NUP88-207ENST00000573584 UNQ9165/PRO28630Q6UXU0 137 aa11.88□□□□□ -0.51
NUP88-207ENST00000573584 ZNF479Q96JC4 524 aa11.88□□□□□ -0.51
NUP88-207ENST00000573584 PHLDA3Q9Y5J5 127 aa11.88□□□□□ -0.51
NUP88-207ENST00000573584 FAM223BA6NKX1 122 aa11.87□□□□□ -0.51
NUP88-207ENST00000573584 DEFB1P60022 68 aa11.87□□□□□ -0.51
NUP88-207ENST00000573584 FOXI2Q6ZQN5 318 aa11.87□□□□□ -0.51
NUP88-207ENST00000573584 FAM223AQ8IWN6 122 aa11.87□□□□□ -0.51
NUP88-207ENST00000573584 TOMM6Q96B49 74 aa11.87□□□□□ -0.51
NUP88-207ENST00000573584 RPL39LQ96EH5 51 aaKnown RBP11.87□□□□□ -0.51
NUP88-207ENST00000573584 OR11H12B2RN74 326 aa11.87□□□□□ -0.51
NUP88-207ENST00000573584 GPHB5Q86YW7 130 aa11.87□□□□□ -0.51
NUP88-207ENST00000573584 OR11H1Q8NG94 326 aa11.87□□□□□ -0.51
NUP88-207ENST00000573584 OR11H2Q8NH07 326 aa11.87□□□□□ -0.51
NUP88-207ENST00000573584 ATP6V0BQ99437 205 aa11.87□□□□□ -0.51
NUP88-207ENST00000573584 C20orf78Q9BR46 151 aa11.87□□□□□ -0.51
NUP88-207ENST00000573584 DPH3P1Q9H4G8 78 aa11.87□□□□□ -0.51
NUP88-207ENST00000573584 IGHV3OR16-10A0A075B7F0 116 aa11.87□□□□□ -0.51
NUP88-207ENST00000573584 ASIPP42127 132 aa11.87□□□□□ -0.51
NUP88-207ENST00000573584 MOB4Q9Y3A3 225 aa11.87□□□□□ -0.51
NUP88-207ENST00000573584 TRBV12-3P01733 135 aa11.86□□□□□ -0.51
NUP88-207ENST00000573584 NEXN-AS1Q8NBZ9 246 aa11.86□□□□□ -0.51
NUP88-207ENST00000573584 IGF2RP11717 2491 aa11.86□□□□□ -0.51
NUP88-207ENST00000573584 MYMXA0A1B0GTQ4 84 aa11.86□□□□□ -0.51
NUP88-207ENST00000573584 OVOL1O14753 267 aa11.86□□□□□ -0.51
NUP88-207ENST00000573584 SLC25A16P16260 332 aa11.86□□□□□ -0.51
NUP88-207ENST00000573584 RAXQ9Y2V3 346 aa11.86□□□□□ -0.51
NUP88-207ENST00000573584 RPL11P62913 178 aaKnown RBP11.85□□□□□ -0.51
NUP88-207ENST00000573584 ANXA2RQ3ZCQ2 193 aa11.85□□□□□ -0.51
NUP88-207ENST00000573584 COL6A6A6NMZ7 2263 aa11.85□□□□□ -0.51
NUP88-207ENST00000573584 MGPP08493 103 aa11.85□□□□□ -0.51
NUP88-207ENST00000573584 RNASE4P34096 147 aaKnown RBP11.85□□□□□ -0.51
NUP88-207ENST00000573584 C19orf54Q5BKX5 351 aa11.85□□□□□ -0.51
NUP88-207ENST00000573584 AGRNO00468 2067 aa11.84□□□□□ -0.51
NUP88-207ENST00000573584 TRBV7-3A0A075B6L6 115 aa11.84□□□□□ -0.51
NUP88-207ENST00000573584 F8W1H4 67 aa11.84□□□□□ -0.51
NUP88-207ENST00000573584 C2orf66Q6UXQ4 117 aa11.84□□□□□ -0.51
NUP88-207ENST00000573584 AKAP6Q13023 2319 aa11.84□□□□□ -0.51
NUP88-207ENST00000573584 H3BMG7 143 aa11.84□□□□□ -0.51
NUP88-207ENST00000573584 WFDC2Q14508 124 aa11.84□□□□□ -0.51
NUP88-207ENST00000573584 TMEM238C9JI98 176 aa11.83□□□□□ -0.51
NUP88-207ENST00000573584 NDUFA4O00483 81 aa11.83□□□□□ -0.51
NUP88-207ENST00000573584 SOCS3O14543 225 aa11.83□□□□□ -0.51
NUP88-207ENST00000573584 SPOCK3Q9BQ16 436 aa11.83□□□□□ -0.51
NUP88-207ENST00000573584 GNRH2O43555 120 aa11.83□□□□□ -0.52
NUP88-207ENST00000573584 BAALCQ8WXS3 180 aa11.83□□□□□ -0.52
NUP88-207ENST00000573584 CYSLTR1Q9Y271 337 aa11.83□□□□□ -0.52
NUP88-207ENST00000573584 IGKV3-7A0A075B6H7 116 aa11.83□□□□□ -0.52
NUP88-207ENST00000573584 F6UB75 175 aa11.83□□□□□ -0.52
NUP88-207ENST00000573584 UCNP55089 124 aa11.83□□□□□ -0.52
NUP88-207ENST00000573584 RRN3P1Q2M238 152 aa11.82□□□□□ -0.52
NUP88-207ENST00000573584 AMTNQ6UX39 209 aa11.82□□□□□ -0.52
NUP88-207ENST00000573584 CELSR1Q9NYQ6 3014 aa11.82□□□□□ -0.52
NUP88-207ENST00000573584 PRSS29PA6NIE9 313 aa11.82□□□□□ -0.52
NUP88-207ENST00000573584 RNF223E7ERA6 249 aa11.82□□□□□ -0.52
NUP88-207ENST00000573584 BRD3OSQ6XYD6 125 aa11.82□□□□□ -0.52
NUP88-207ENST00000573584 LINC01619G3V211 115 aa11.81□□□□□ -0.52
NUP88-207ENST00000573584 IGHV3-11P01762 117 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms