RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 TMEM242Q9NWH2 141 aa4.73□□□□□ -1.65
VPS53-209ENST00000570771 PLECQ15149 4684 aaKnown RBP4.73□□□□□ -1.65
VPS53-209ENST00000570771 NBEAL2Q6ZNJ1 2754 aa4.73□□□□□ -1.65
VPS53-209ENST00000570771 TGP01266 2768 aa4.72□□□□□ -1.65
VPS53-209ENST00000570771 LOC102724200A0A096LPH7 203 aaPredicted RBP4.72□□□□□ -1.65
VPS53-209ENST00000570771 KIR2DL5BA0A0G2JN68 375 aa4.72□□□□□ -1.65
VPS53-209ENST00000570771 KIR2DL5BA0A0G2JPC4 375 aa4.72□□□□□ -1.65
VPS53-209ENST00000570771 C7orf77A4D0Y5 90 aa4.72□□□□□ -1.65
VPS53-209ENST00000570771 ZNF705GA8MUZ8 300 aaPredicted RBP4.72□□□□□ -1.65
VPS53-209ENST00000570771 A8MWL6 223 aa4.72□□□□□ -1.65
VPS53-209ENST00000570771 K7EN84 100 aa4.72□□□□□ -1.65
VPS53-209ENST00000570771 UBE2CO00762 179 aa4.72□□□□□ -1.65
VPS53-209ENST00000570771 SH2D1AO60880 128 aa4.72□□□□□ -1.65
VPS53-209ENST00000570771 IGLV2-8P01709 118 aa4.72□□□□□ -1.65
VPS53-209ENST00000570771 S100PP25815 95 aa4.72□□□□□ -1.65
VPS53-209ENST00000570771 RNASE4P34096 147 aaKnown RBP4.72□□□□□ -1.65
VPS53-209ENST00000570771 DEFA6Q01524 100 aa4.72□□□□□ -1.65
VPS53-209ENST00000570771 OR5I1Q13606 314 aa4.72□□□□□ -1.65
VPS53-209ENST00000570771 SPINK13Q1W4C9 94 aa4.72□□□□□ -1.65
VPS53-209ENST00000570771 RNF212Q495C1 297 aa4.72□□□□□ -1.65
VPS53-209ENST00000570771 CT83Q5H943 113 aa4.72□□□□□ -1.65
VPS53-209ENST00000570771 Q6AWC8 147 aa4.72□□□□□ -1.65
VPS53-209ENST00000570771 KCNIP4Q6PIL6 250 aa4.72□□□□□ -1.65
VPS53-209ENST00000570771 FAM159AQ6UWV7 190 aa4.72□□□□□ -1.65
VPS53-209ENST00000570771 AMTNQ6UX39 209 aa4.72□□□□□ -1.65
VPS53-209ENST00000570771 KIR2DL5AQ8N109 375 aa4.72□□□□□ -1.65
VPS53-209ENST00000570771 TMEM256Q8N2U0 113 aa4.72□□□□□ -1.65
VPS53-209ENST00000570771 KIR2DL5BQ8NHK3 375 aa4.72□□□□□ -1.65
VPS53-209ENST00000570771 BTF3L4Q96K17 158 aa4.72□□□□□ -1.65
VPS53-209ENST00000570771 RPP21Q9H633 154 aaKnown RBP4.72□□□□□ -1.65
VPS53-209ENST00000570771 RPS10P5Q9NQ39 176 aa4.72□□□□□ -1.65
VPS53-209ENST00000570771 STAB2Q8WWQ8 2551 aa4.71□□□□□ -1.65
VPS53-209ENST00000570771 TMEM189A5PLL7 270 aa4.71□□□□□ -1.66
VPS53-209ENST00000570771 C19orf71A6NCJ1 209 aa4.71□□□□□ -1.66
VPS53-209ENST00000570771 FAM231BA6NCW3 169 aa4.71□□□□□ -1.66
VPS53-209ENST00000570771 CXorf65A6NEN9 183 aa4.71□□□□□ -1.66
VPS53-209ENST00000570771 J3KRW8 73 aa4.71□□□□□ -1.66
VPS53-209ENST00000570771 M0R2Z0 102 aa4.71□□□□□ -1.66
VPS53-209ENST00000570771 ORM1P02763 201 aa4.71□□□□□ -1.66
VPS53-209ENST00000570771 CXCL1P09341 107 aa4.71□□□□□ -1.66
VPS53-209ENST00000570771 GIG44P09565 113 aaPredicted RBP4.71□□□□□ -1.66
VPS53-209ENST00000570771 RPL35AP18077 110 aaKnown RBP4.71□□□□□ -1.66
VPS53-209ENST00000570771 NUDT10Q8NFP7 164 aa4.71□□□□□ -1.66
VPS53-209ENST00000570771 OR2D3Q8NGH3 330 aa4.71□□□□□ -1.66
VPS53-209ENST00000570771 NUDT11Q96G61 164 aa4.71□□□□□ -1.66
VPS53-209ENST00000570771 IMMP2LQ96T52 175 aa4.71□□□□□ -1.66
VPS53-209ENST00000570771 PYGO2Q9BRQ0 406 aa4.71□□□□□ -1.66
VPS53-209ENST00000570771 TMEM208Q9BTX3 173 aa4.71□□□□□ -1.66
VPS53-209ENST00000570771 CSTL1Q9H114 145 aa4.71□□□□□ -1.66
VPS53-209ENST00000570771 RNASE7Q9H1E1 156 aaKnown RBP4.71□□□□□ -1.66
VPS53-209ENST00000570771 GOLT1BQ9Y3E0 138 aa4.71□□□□□ -1.66
VPS53-209ENST00000570771 TRGV11A0A075B6L2 103 aa4.7□□□□□ -1.66
VPS53-209ENST00000570771 TRAV9-1A0A075B6T8 112 aa4.7□□□□□ -1.66
VPS53-209ENST00000570771 TRAV12-3A0A0B4J271 114 aa4.7□□□□□ -1.66
VPS53-209ENST00000570771 A0A1W2PPQ1 181 aa4.7□□□□□ -1.66
VPS53-209ENST00000570771 A8MZ25 164 aa4.7□□□□□ -1.66
VPS53-209ENST00000570771 CA1P00915 261 aaPredicted RBP4.7□□□□□ -1.66
VPS53-209ENST00000570771 IGHV4-30-4P0DP06 118 aa4.7□□□□□ -1.66
VPS53-209ENST00000570771 ZNF80P51504 273 aaPredicted RBP4.7□□□□□ -1.66
VPS53-209ENST00000570771 FXYD7P58549 80 aa4.7□□□□□ -1.66
VPS53-209ENST00000570771 BTN1A1Q13410 526 aa4.7□□□□□ -1.66
VPS53-209ENST00000570771 GFI1BQ5VTD9 330 aa4.7□□□□□ -1.66
VPS53-209ENST00000570771 TSKUQ8WUA8 353 aa4.7□□□□□ -1.66
VPS53-209ENST00000570771 BORCS7Q96B45 105 aa4.7□□□□□ -1.66
VPS53-209ENST00000570771 GFRA4Q9GZZ7 299 aa4.7□□□□□ -1.66
VPS53-209ENST00000570771 RETNQ9HD89 108 aa4.7□□□□□ -1.66
VPS53-209ENST00000570771 SMCO4Q9NRQ5 59 aa4.7□□□□□ -1.66
VPS53-209ENST00000570771 IL36BQ9NZH7 164 aa4.7□□□□□ -1.66
VPS53-209ENST00000570771 XCL2Q9UBD3 114 aa4.7□□□□□ -1.66
VPS53-209ENST00000570771 NAGKQ9UJ70 344 aa4.7□□□□□ -1.66
VPS53-209ENST00000570771 V9GYV3 84 aa4.7□□□□□ -1.66
VPS53-209ENST00000570771 CSMD3Q7Z407 3707 aa4.7□□□□□ -1.66
VPS53-209ENST00000570771 TRAV12-2A0A075B6T6 113 aa4.69□□□□□ -1.66
VPS53-209ENST00000570771 IGHV1OR15-1A0A075B7D0 117 aa4.69□□□□□ -1.66
VPS53-209ENST00000570771 F2Z2F3 143 aa4.69□□□□□ -1.66
VPS53-209ENST00000570771 ZNF324O75467 553 aaPredicted RBP4.69□□□□□ -1.66
VPS53-209ENST00000570771 MED14OSP0DP75 135 aa4.69□□□□□ -1.66
VPS53-209ENST00000570771 S100A4P26447 101 aaKnown RBP4.69□□□□□ -1.66
VPS53-209ENST00000570771 ASIPP42127 132 aa4.69□□□□□ -1.66
VPS53-209ENST00000570771 CRIP1P50238 77 aa4.69□□□□□ -1.66
VPS53-209ENST00000570771 KIR3DS1Q14943 382 aa4.69□□□□□ -1.66
VPS53-209ENST00000570771 TDRG1Q3Y452 100 aa4.69□□□□□ -1.66
VPS53-209ENST00000570771 PRR9Q5T870 116 aa4.69□□□□□ -1.66
VPS53-209ENST00000570771 LINC00322Q6ZN03 302 aaPredicted RBP4.69□□□□□ -1.66
VPS53-209ENST00000570771 Q6ZQT7 251 aa4.69□□□□□ -1.66
VPS53-209ENST00000570771 LINC01587Q99440 93 aa4.69□□□□□ -1.66
VPS53-209ENST00000570771 LINC00467Q9BRT7 94 aa4.69□□□□□ -1.66
VPS53-209ENST00000570771 NAT8BQ9UHF3 227 aa4.69□□□□□ -1.66
VPS53-209ENST00000570771 SMIM27A0A1W2PRY6 76 aa4.68□□□□□ -1.66
VPS53-209ENST00000570771 SMIM9A6NGZ8 99 aa4.68□□□□□ -1.66
VPS53-209ENST00000570771 CBY3A6NI87 242 aa4.68□□□□□ -1.66
VPS53-209ENST00000570771 KRTAP9-7A8MTY7 169 aa4.68□□□□□ -1.66
VPS53-209ENST00000570771 CRXO43186 299 aaPredicted RBP4.68□□□□□ -1.66
VPS53-209ENST00000570771 S100A8P05109 93 aa4.68□□□□□ -1.66
VPS53-209ENST00000570771 FRMD6-AS1P0C7T7 363 aa4.68□□□□□ -1.66
VPS53-209ENST00000570771 RBMY1A1P0DJD3 496 aaKnown RBP4.68□□□□□ -1.66
VPS53-209ENST00000570771 RBMY1CP0DJD4 496 aa4.68□□□□□ -1.66
VPS53-209ENST00000570771 ZNF415Q09FC8 603 aa4.68□□□□□ -1.66
VPS53-209ENST00000570771 RBMY1FQ15415 496 aaKnown RBP4.68□□□□□ -1.66
VPS53-209ENST00000570771 ANXA2RQ3ZCQ2 193 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms