RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 TRBV19A0A075B6N1 114 aa3.73□□□□□ -1.81
VPS53-208ENST00000570650 IGKV2-40A0A087WW87 121 aaPredicted RBP3.73□□□□□ -1.81
VPS53-208ENST00000570650 TRBV7-9A0A0J9YWB2 115 aa3.73□□□□□ -1.81
VPS53-208ENST00000570650 TRBV6-4A0A1B0GX49 114 aa3.73□□□□□ -1.81
VPS53-208ENST00000570650 FBLL1A6NHQ2 334 aaKnown RBP3.73□□□□□ -1.81
VPS53-208ENST00000570650 M0R2P5 195 aa3.73□□□□□ -1.81
VPS53-208ENST00000570650 AGPAT2O15120 278 aa3.73□□□□□ -1.81
VPS53-208ENST00000570650 IGKV2D-40P01614 121 aaPredicted RBP3.73□□□□□ -1.81
VPS53-208ENST00000570650 SEC11BP0C7V7 166 aa3.73□□□□□ -1.81
VPS53-208ENST00000570650 UBE2MP61081 183 aaKnown RBP3.73□□□□□ -1.81
VPS53-208ENST00000570650 NCS1P62166 190 aa3.73□□□□□ -1.81
VPS53-208ENST00000570650 TWIST1Q15672 202 aa3.73□□□□□ -1.81
VPS53-208ENST00000570650 BAK1Q16611 211 aa3.73□□□□□ -1.81
VPS53-208ENST00000570650 TMEM183BQ1AE95 376 aa3.73□□□□□ -1.81
VPS53-208ENST00000570650 TMEM183AQ8IXX5 376 aa3.73□□□□□ -1.81
VPS53-208ENST00000570650 LINC01600Q96MT4 127 aa3.73□□□□□ -1.81
VPS53-208ENST00000570650 SH3BGRL3Q9H299 93 aa3.73□□□□□ -1.81
VPS53-208ENST00000570650 OR51M1Q9H341 326 aa3.73□□□□□ -1.81
VPS53-208ENST00000570650 AAMDCQ9H7C9 122 aa3.73□□□□□ -1.81
VPS53-208ENST00000570650 ANKRD65E5RJM6 399 aa3.72□□□□□ -1.81
VPS53-208ENST00000570650 CIDEAO60543 219 aa3.72□□□□□ -1.81
VPS53-208ENST00000570650 NDUFB4O95168 129 aa3.72□□□□□ -1.81
VPS53-208ENST00000570650 HOXB5P09067 269 aa3.72□□□□□ -1.81
VPS53-208ENST00000570650 OR10J4P0C629 311 aa3.72□□□□□ -1.81
VPS53-208ENST00000570650 METTL15P1P0C7V9 234 aa3.72□□□□□ -1.81
VPS53-208ENST00000570650 ZNF138P52744 262 aa3.72□□□□□ -1.81
VPS53-208ENST00000570650 VBP1P61758 197 aa3.72□□□□□ -1.81
VPS53-208ENST00000570650 RAB31Q13636 194 aa3.72□□□□□ -1.81
VPS53-208ENST00000570650 PDE6HQ13956 83 aa3.72□□□□□ -1.81
VPS53-208ENST00000570650 ZNF266Q14584 549 aa3.72□□□□□ -1.81
VPS53-208ENST00000570650 TMEM128Q5BJH2 165 aa3.72□□□□□ -1.81
VPS53-208ENST00000570650 FAM159AQ6UWV7 190 aa3.72□□□□□ -1.81
VPS53-208ENST00000570650 Q6ZRG5 221 aa3.72□□□□□ -1.81
VPS53-208ENST00000570650 EXOC3-AS1Q8N2X6 119 aa3.72□□□□□ -1.81
VPS53-208ENST00000570650 OR1L4Q8NGR5 311 aa3.72□□□□□ -1.81
VPS53-208ENST00000570650 MPLKIPQ8TAP9 179 aa3.72□□□□□ -1.81
VPS53-208ENST00000570650 RAB2BQ8WUD1 216 aa3.72□□□□□ -1.81
VPS53-208ENST00000570650 SMIM4Q8WVI0 70 aa3.72□□□□□ -1.81
VPS53-208ENST00000570650 AP3S1Q92572 193 aa3.72□□□□□ -1.81
VPS53-208ENST00000570650 C2orf50Q96LR7 162 aa3.72□□□□□ -1.81
VPS53-208ENST00000570650 MGST2Q99735 147 aa3.72□□□□□ -1.81
VPS53-208ENST00000570650 Q9H521 79 aa3.72□□□□□ -1.81
VPS53-208ENST00000570650 TIMM9Q9Y5J7 89 aa3.72□□□□□ -1.81
VPS53-208ENST00000570650 A0A0U1RQV1 116 aa3.71□□□□□ -1.82
VPS53-208ENST00000570650 ANKRD20A5PA0PJZ0 165 aa3.71□□□□□ -1.82
VPS53-208ENST00000570650 SSSCA1O60232 199 aa3.71□□□□□ -1.82
VPS53-208ENST00000570650 Q6AWC8 147 aa3.71□□□□□ -1.82
VPS53-208ENST00000570650 ATRAIDQ6UW56 229 aa3.71□□□□□ -1.82
VPS53-208ENST00000570650 TMEM14EPQ6UXP3 125 aa3.71□□□□□ -1.82
VPS53-208ENST00000570650 C12orf45Q8N5I9 185 aaPredicted RBP3.71□□□□□ -1.82
VPS53-208ENST00000570650 C9orf163Q8N9P6 203 aa3.71□□□□□ -1.82
VPS53-208ENST00000570650 Q8TAT8 98 aa3.71□□□□□ -1.82
VPS53-208ENST00000570650 UBE2WQ96B02 151 aa3.71□□□□□ -1.82
VPS53-208ENST00000570650 ZC2HC1AQ96GY0 325 aa3.71□□□□□ -1.82
VPS53-208ENST00000570650 SMIM8Q96KF7 97 aa3.71□□□□□ -1.82
VPS53-208ENST00000570650 DNAJC30Q96LL9 226 aa3.71□□□□□ -1.82
VPS53-208ENST00000570650 PFDN5Q99471 154 aa3.71□□□□□ -1.82
VPS53-208ENST00000570650 SOSTQ9BQB4 213 aa3.71□□□□□ -1.82
VPS53-208ENST00000570650 GGACTQ9BVM4 153 aa3.71□□□□□ -1.82
VPS53-208ENST00000570650 MCUBQ9NWR8 336 aa3.71□□□□□ -1.82
VPS53-208ENST00000570650 TMEM14CQ9P0S9 112 aa3.71□□□□□ -1.82
VPS53-208ENST00000570650 NAGKQ9UJ70 344 aa3.71□□□□□ -1.82
VPS53-208ENST00000570650 URGCP-MRPS24S4R325 110 aa3.71□□□□□ -1.82
VPS53-208ENST00000570650 A0A087WWC5 75 aa3.7□□□□□ -1.82
VPS53-208ENST00000570650 IGHV3-73A0A0B4J1V6 119 aa3.7□□□□□ -1.82
VPS53-208ENST00000570650 IGLV5-39A0A0G2JS06 123 aa3.7□□□□□ -1.82
VPS53-208ENST00000570650 A0A0J9YXV3 536 aa3.7□□□□□ -1.82
VPS53-208ENST00000570650 C5orf51A6NDU8 294 aa3.7□□□□□ -1.82
VPS53-208ENST00000570650 PANO1I0J062 215 aa3.7□□□□□ -1.82
VPS53-208ENST00000570650 CTDSPLO15194 276 aa3.7□□□□□ -1.82
VPS53-208ENST00000570650 TNFRSF6BO95407 300 aa3.7□□□□□ -1.82
VPS53-208ENST00000570650 SFT2D2O95562 160 aa3.7□□□□□ -1.82
VPS53-208ENST00000570650 MGST1P10620 155 aaKnown RBP3.7□□□□□ -1.82
VPS53-208ENST00000570650 CAMLGP49069 296 aa3.7□□□□□ -1.82
VPS53-208ENST00000570650 Q0VG73 95 aa3.7□□□□□ -1.82
VPS53-208ENST00000570650 ELOBQ15370 118 aa3.7□□□□□ -1.82
VPS53-208ENST00000570650 MIC13Q5XKP0 118 aa3.7□□□□□ -1.82
VPS53-208ENST00000570650 DGAT2L7PQ6IED9 249 aa3.7□□□□□ -1.82
VPS53-208ENST00000570650 NIT1Q86X76 327 aa3.7□□□□□ -1.82
VPS53-208ENST00000570650 OR10G9Q8NGN4 311 aa3.7□□□□□ -1.82
VPS53-208ENST00000570650 SVIPQ8NHG7 77 aa3.7□□□□□ -1.82
VPS53-208ENST00000570650 ATP5SQ99766 215 aa3.7□□□□□ -1.82
VPS53-208ENST00000570650 GPN1Q9HCN4 374 aaPredicted RBP3.7□□□□□ -1.82
VPS53-208ENST00000570650 VCX3AQ9NNX9 186 aa3.7□□□□□ -1.82
VPS53-208ENST00000570650 SLC39A9Q9NUM3 307 aa3.7□□□□□ -1.82
VPS53-208ENST00000570650 KLK12Q9UKR0 248 aa3.7□□□□□ -1.82
VPS53-208ENST00000570650 RBAKDNA6NC62 111 aa3.69□□□□□ -1.82
VPS53-208ENST00000570650 GAGE12JA6NER3 117 aa3.69□□□□□ -1.82
VPS53-208ENST00000570650 GNRH2O43555 120 aa3.69□□□□□ -1.82
VPS53-208ENST00000570650 TSC22D2O75157 780 aa3.69□□□□□ -1.82
VPS53-208ENST00000570650 TYMSP04818 313 aa3.69□□□□□ -1.82
VPS53-208ENST00000570650 LINC00694P0DN24 101 aa3.69□□□□□ -1.82
VPS53-208ENST00000570650 PYYP10082 97 aa3.69□□□□□ -1.82
VPS53-208ENST00000570650 INPP1P49441 399 aa3.69□□□□□ -1.82
VPS53-208ENST00000570650 KRTAP10-8P60410 259 aa3.69□□□□□ -1.82
VPS53-208ENST00000570650 RPL19P84098 196 aaKnown RBP3.69□□□□□ -1.82
VPS53-208ENST00000570650 ARL16Q0P5N6 197 aa3.69□□□□□ -1.82
VPS53-208ENST00000570650 GAGE1Q13065 139 aa3.69□□□□□ -1.82
VPS53-208ENST00000570650 GAGE4Q13068 117 aa3.69□□□□□ -1.82
VPS53-208ENST00000570650 GAGE5Q13069 117 aa3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms