RNA–Protein interactions for RNA: ENST00000569001.1

BBS4-215, Transcript of Bardet-Biedl syndrome 4, human

TSL 3

Gene BBS4, Length 349 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BBS4-215	ENST00000569001	TRAV2	A0A0B4J234	112 aa		0.37	□□□□□ -2.35
BBS4-215	ENST00000569001	TRBV30	A0A0K0K1B3	111 aa		0.37	□□□□□ -2.35
BBS4-215	ENST00000569001		A0A1B0GW64	132 aa		0.37	□□□□□ -2.35
BBS4-215	ENST00000569001	BBIP1	A8MTZ0	92 aa		0.37	□□□□□ -2.35
BBS4-215	ENST00000569001	EDF1	O60869	148 aa	Known RBP	0.37	□□□□□ -2.35
BBS4-215	ENST00000569001	OR2H2	O95918	312 aa		0.37	□□□□□ -2.35
BBS4-215	ENST00000569001	HIST1H1B	P16401	226 aa	Known RBP	0.37	□□□□□ -2.35
BBS4-215	ENST00000569001	CKS2	P33552	79 aa		0.37	□□□□□ -2.35
BBS4-215	ENST00000569001	PLGLB1	Q02325	96 aa		0.37	□□□□□ -2.35
BBS4-215	ENST00000569001	RHOH	Q15669	191 aa		0.37	□□□□□ -2.35
BBS4-215	ENST00000569001	XAF1	Q6GPH4	301 aa		0.37	□□□□□ -2.35
BBS4-215	ENST00000569001	OR8J3	Q8NGG0	315 aa		0.37	□□□□□ -2.35
BBS4-215	ENST00000569001	DMAC1	Q96GE9	116 aa		0.37	□□□□□ -2.35
BBS4-215	ENST00000569001	SMIM7	Q9BQ49	75 aa		0.37	□□□□□ -2.35
BBS4-215	ENST00000569001	DLEC1	Q9Y238	1755 aa		0.37	□□□□□ -2.35
BBS4-215	ENST00000569001	ASH1L	Q9NR48	2969 aa	Known RBP	0.36	□□□□□ -2.35
BBS4-215	ENST00000569001	ARHGEF10	O15013	1369 aa		0.36	□□□□□ -2.35
BBS4-215	ENST00000569001	LRP5	O75197	1615 aa		0.36	□□□□□ -2.35
BBS4-215	ENST00000569001	IGHV1-24	A0A0C4DH33	117 aa		0.36	□□□□□ -2.35
BBS4-215	ENST00000569001	YPEL1	O60688	119 aa		0.36	□□□□□ -2.35
BBS4-215	ENST00000569001	CD3D	P04234	171 aa		0.36	□□□□□ -2.35
BBS4-215	ENST00000569001	PAEP	P09466	180 aa		0.36	□□□□□ -2.35
BBS4-215	ENST00000569001	HLA-DRB4	P13762	266 aa		0.36	□□□□□ -2.35
BBS4-215	ENST00000569001	ADCYAP1	P18509	176 aa		0.36	□□□□□ -2.35
BBS4-215	ENST00000569001	AKR1D1	P51857	326 aa		0.36	□□□□□ -2.35
BBS4-215	ENST00000569001	CSAG1	Q6PB30	78 aa		0.36	□□□□□ -2.35
BBS4-215	ENST00000569001	IDO2	Q6ZQW0	420 aa		0.36	□□□□□ -2.35
BBS4-215	ENST00000569001		Q6ZS92	163 aa		0.36	□□□□□ -2.35
BBS4-215	ENST00000569001	PPDPFL	Q8WWR9	84 aa		0.36	□□□□□ -2.35
BBS4-215	ENST00000569001	ANP32B	Q92688	251 aa	Known RBP	0.36	□□□□□ -2.35
BBS4-215	ENST00000569001	CCL19	Q99731	98 aa		0.36	□□□□□ -2.35
BBS4-215	ENST00000569001	SLC35B3	Q9H1N7	401 aa		0.36	□□□□□ -2.35
BBS4-215	ENST00000569001	DNAJC15	Q9Y5T4	150 aa		0.36	□□□□□ -2.35
BBS4-215	ENST00000569001	HLA-DRB4	X5D2U9	266 aa		0.36	□□□□□ -2.35
BBS4-215	ENST00000569001	FHAD1	B1AJZ9	1412 aa		0.36	□□□□□ -2.35
BBS4-215	ENST00000569001	BLM	P54132	1417 aa	Predicted RBP	0.36	□□□□□ -2.35
BBS4-215	ENST00000569001	ZNF142	P52746	1687 aa	Predicted RBP	0.36	□□□□□ -2.35
BBS4-215	ENST00000569001	MAP2	P11137	1827 aa	Known RBP	0.36	□□□□□ -2.35
BBS4-215	ENST00000569001	ZNF462	Q96JM2	2506 aa		0.35	□□□□□ -2.35
BBS4-215	ENST00000569001	NBDY	A0A0U1RRE5	68 aa		0.35	□□□□□ -2.35
BBS4-215	ENST00000569001	LOC105371267	A0A1B0GV96	52 aa		0.35	□□□□□ -2.35
BBS4-215	ENST00000569001	TMEM30CP	A0ZSE6	113 aa		0.35	□□□□□ -2.35
BBS4-215	ENST00000569001	HIGD1C	A8MV81	97 aa		0.35	□□□□□ -2.35
BBS4-215	ENST00000569001	TPST1	O60507	370 aa		0.35	□□□□□ -2.35
BBS4-215	ENST00000569001	SMIM24	O75264	130 aa		0.35	□□□□□ -2.35
BBS4-215	ENST00000569001	MT-ND4L	P03901	98 aa		0.35	□□□□□ -2.35
BBS4-215	ENST00000569001	TSPAN19	P0C672	248 aa		0.35	□□□□□ -2.35
BBS4-215	ENST00000569001	EVI2A	P22794	236 aa		0.35	□□□□□ -2.35
BBS4-215	ENST00000569001	KDELR1	P24390	212 aa		0.35	□□□□□ -2.35
BBS4-215	ENST00000569001	CMPK1	P30085	196 aa		0.35	□□□□□ -2.35
BBS4-215	ENST00000569001	CAV3	P56539	151 aa		0.35	□□□□□ -2.35
BBS4-215	ENST00000569001	PCBD1	P61457	104 aa		0.35	□□□□□ -2.35
BBS4-215	ENST00000569001	SPINK9	Q5DT21	86 aa		0.35	□□□□□ -2.35
BBS4-215	ENST00000569001	TMEM244	Q5VVB8	128 aa		0.35	□□□□□ -2.35
BBS4-215	ENST00000569001	LYPD5	Q6UWN5	251 aa		0.35	□□□□□ -2.35
BBS4-215	ENST00000569001	KRTAP19-3	Q7Z4W3	81 aa		0.35	□□□□□ -2.35
BBS4-215	ENST00000569001	C10orf95	Q9H7T3	257 aa		0.35	□□□□□ -2.35
BBS4-215	ENST00000569001	BATF3	Q9NR55	127 aa		0.35	□□□□□ -2.35
BBS4-215	ENST00000569001	TAS2R8	Q9NYW2	309 aa		0.35	□□□□□ -2.35
BBS4-215	ENST00000569001	AFDN	P55196	1824 aa	Known RBP	0.35	□□□□□ -2.35
BBS4-215	ENST00000569001	PRG4	Q92954	1404 aa	Predicted RBP	0.35	□□□□□ -2.35
BBS4-215	ENST00000569001	CDK5RAP2	Q96SN8	1893 aa		0.35	□□□□□ -2.35
BBS4-215	ENST00000569001	CCDC171	Q6TFL3	1326 aa		0.35	□□□□□ -2.35
BBS4-215	ENST00000569001	CDK12	Q9NYV4	1490 aa	Predicted RBP	0.35	□□□□□ -2.35
BBS4-215	ENST00000569001	FRAS1	Q86XX4	4008 aa		0.35	□□□□□ -2.35
BBS4-215	ENST00000569001		A0A0D9SG42	100 aa		0.34	□□□□□ -2.36
BBS4-215	ENST00000569001	LOC107984156	A0A0G2JMH3	177 aa		0.34	□□□□□ -2.36
BBS4-215	ENST00000569001		A0A0G2JMM0	328 aa		0.34	□□□□□ -2.36
BBS4-215	ENST00000569001	TRBV10-1	A0A0K0K1A3	114 aa		0.34	□□□□□ -2.36
BBS4-215	ENST00000569001	CXorf51A	A0A1B0GTR3	108 aa		0.34	□□□□□ -2.36
BBS4-215	ENST00000569001	DISP2	A7MBM2	1401 aa		0.34	□□□□□ -2.36
BBS4-215	ENST00000569001		M0R2P5	195 aa		0.34	□□□□□ -2.36
BBS4-215	ENST00000569001	ADGRB1	O14514	1584 aa		0.34	□□□□□ -2.36
BBS4-215	ENST00000569001	CDC42EP2	O14613	210 aa		0.34	□□□□□ -2.36
BBS4-215	ENST00000569001	ARPC5	O15511	151 aa		0.34	□□□□□ -2.36
BBS4-215	ENST00000569001	NCR2	O95944	276 aa		0.34	□□□□□ -2.36
BBS4-215	ENST00000569001	FXYD6P3	P58550	94 aa		0.34	□□□□□ -2.36
BBS4-215	ENST00000569001	SNRPD3	P62318	126 aa	Known RBP	0.34	□□□□□ -2.36
BBS4-215	ENST00000569001	FXYD3	Q14802	87 aa		0.34	□□□□□ -2.36
BBS4-215	ENST00000569001	ATP11AUN	Q6ZP68	121 aa		0.34	□□□□□ -2.36
BBS4-215	ENST00000569001	NDUFA11	Q86Y39	141 aa		0.34	□□□□□ -2.36
BBS4-215	ENST00000569001	ARL17A	Q8IVW1	177 aa		0.34	□□□□□ -2.36
BBS4-215	ENST00000569001	C5orf56	Q8N8D9	126 aa		0.34	□□□□□ -2.36
BBS4-215	ENST00000569001	ATP6V0E2	Q8NHE4	81 aa		0.34	□□□□□ -2.36
BBS4-215	ENST00000569001	BANF2	Q9H503	90 aa		0.34	□□□□□ -2.36
BBS4-215	ENST00000569001	CALML5	Q9NZT1	146 aa		0.34	□□□□□ -2.36
BBS4-215	ENST00000569001	MRPL36	Q9P0J6	103 aa	Known RBP	0.34	□□□□□ -2.36
BBS4-215	ENST00000569001	CASZ1	Q86V15	1759 aa		0.34	□□□□□ -2.36
BBS4-215	ENST00000569001	ESPL1	Q14674	2120 aa		0.34	□□□□□ -2.36
BBS4-215	ENST00000569001	RREB1	Q92766	1687 aa		0.33	□□□□□ -2.36
BBS4-215	ENST00000569001	MYH13	Q9UKX3	1938 aa		0.33	□□□□□ -2.36
BBS4-215	ENST00000569001	LAMB1	P07942	1786 aa		0.33	□□□□□ -2.36
BBS4-215	ENST00000569001	TRBV20-1	A0A075B6N2	111 aa		0.33	□□□□□ -2.36
BBS4-215	ENST00000569001	RBP4	P02753	201 aa		0.33	□□□□□ -2.36
BBS4-215	ENST00000569001	MPC1L	P0DKB6	136 aa		0.33	□□□□□ -2.36
BBS4-215	ENST00000569001	KLKP1	Q107X0	134 aa		0.33	□□□□□ -2.36
BBS4-215	ENST00000569001	SPINK13	Q1W4C9	94 aa		0.33	□□□□□ -2.36
BBS4-215	ENST00000569001	GLYATL3	Q5SZD4	288 aa		0.33	□□□□□ -2.36
BBS4-215	ENST00000569001	SLC25A26	Q70HW3	274 aa		0.33	□□□□□ -2.36
BBS4-215	ENST00000569001	MMGT1	Q8N4V1	131 aa		0.33	□□□□□ -2.36

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