RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 IGHV3-16A0A0C4DH30 117 aa11.41□□□□□ -0.58
CLN3-231ENST00000568422 A0A1W2PPV4 95 aa11.41□□□□□ -0.58
CLN3-231ENST00000568422 SSNA1O43805 119 aa11.41□□□□□ -0.58
CLN3-231ENST00000568422 TIRAPP58753 221 aa11.41□□□□□ -0.58
CLN3-231ENST00000568422 ACOT6Q3I5F7 207 aaPredicted RBP11.41□□□□□ -0.58
CLN3-231ENST00000568422 GNRH2O43555 120 aa11.4□□□□□ -0.58
CLN3-231ENST00000568422 GOLT1AQ6ZVE7 132 aa11.4□□□□□ -0.58
CLN3-231ENST00000568422 SMIM3Q9BZL3 60 aa11.4□□□□□ -0.58
CLN3-231ENST00000568422 SDF2L1Q9HCN8 221 aa11.4□□□□□ -0.58
CLN3-231ENST00000568422 TREM1Q9NP99 234 aa11.4□□□□□ -0.58
CLN3-231ENST00000568422 CIDEAO60543 219 aa11.39□□□□□ -0.59
CLN3-231ENST00000568422 CRYGDP07320 174 aa11.39□□□□□ -0.59
CLN3-231ENST00000568422 XGP55808 180 aa11.39□□□□□ -0.59
CLN3-231ENST00000568422 RPH3ALQ9UNE2 315 aa11.39□□□□□ -0.59
CLN3-231ENST00000568422 SERTM2A0A1B0GWG4 89 aa11.38□□□□□ -0.59
CLN3-231ENST00000568422 TYMSP04818 313 aa11.38□□□□□ -0.59
CLN3-231ENST00000568422 FUSP35637 526 aaKnown RBP eCLIP11.38□□□□□ -0.59
CLN3-231ENST00000568422 IGHV3-38A0A0C4DH36 116 aa11.37□□□□□ -0.59
CLN3-231ENST00000568422 PFN1P07737 140 aaKnown RBP11.37□□□□□ -0.59
CLN3-231ENST00000568422 GATA1P15976 413 aaPredicted RBP11.37□□□□□ -0.59
CLN3-231ENST00000568422 DEFA1P59665 94 aa11.37□□□□□ -0.59
CLN3-231ENST00000568422 DEFA3P59666 94 aa11.37□□□□□ -0.59
CLN3-231ENST00000568422 NHLRC2Q8NBF2 726 aa11.37□□□□□ -0.59
CLN3-231ENST00000568422 ASB13Q8WXK3 278 aa11.37□□□□□ -0.59
CLN3-231ENST00000568422 NDFIP1Q9BT67 221 aa11.37□□□□□ -0.59
CLN3-231ENST00000568422 F6UZH7 168 aa11.36□□□□□ -0.59
CLN3-231ENST00000568422 GCSHP23434 173 aa11.36□□□□□ -0.59
CLN3-231ENST00000568422 PPT1P50897 306 aa11.36□□□□□ -0.59
CLN3-231ENST00000568422 KRTAP10-1P60331 282 aa11.36□□□□□ -0.59
CLN3-231ENST00000568422 OR10G9Q8NGN4 311 aa11.36□□□□□ -0.59
CLN3-231ENST00000568422 OR10G7Q8NGN6 311 aa11.36□□□□□ -0.59
CLN3-231ENST00000568422 FRZBQ92765 325 aa11.36□□□□□ -0.59
CLN3-231ENST00000568422 TVP23CQ96ET8 276 aa11.36□□□□□ -0.59
CLN3-231ENST00000568422 WFDC1Q9HC57 220 aa11.36□□□□□ -0.59
CLN3-231ENST00000568422 TRAV8-1A0A0A6YYK1 113 aa11.35□□□□□ -0.59
CLN3-231ENST00000568422 TRAV8-6A0A0B4J262 113 aa11.35□□□□□ -0.59
CLN3-231ENST00000568422 LOC100131303A0A0U1RQF7 123 aa11.35□□□□□ -0.59
CLN3-231ENST00000568422 FBLL1A6NHQ2 334 aaKnown RBP11.35□□□□□ -0.59
CLN3-231ENST00000568422 K7EQM0 130 aa11.35□□□□□ -0.59
CLN3-231ENST00000568422 EIF3GO75821 320 aaKnown RBP eCLIP11.35□□□□□ -0.59
CLN3-231ENST00000568422 INAFM2P0DMQ5 153 aa11.35□□□□□ -0.59
CLN3-231ENST00000568422 ZNF876PQ49A33 203 aa11.35□□□□□ -0.59
CLN3-231ENST00000568422 LINC01556Q5JQF7 62 aa11.35□□□□□ -0.59
CLN3-231ENST00000568422 PRADC1Q9BSG0 188 aa11.35□□□□□ -0.59
CLN3-231ENST00000568422 TAAR5O14804 337 aa11.34□□□□□ -0.59
CLN3-231ENST00000568422 PSCAO43653 123 aa11.34□□□□□ -0.59
CLN3-231ENST00000568422 RAB2AP61019 212 aa11.34□□□□□ -0.59
CLN3-231ENST00000568422 GNG5P63218 68 aa11.34□□□□□ -0.59
CLN3-231ENST00000568422 SLC25A29Q8N8R3 303 aa11.34□□□□□ -0.59
CLN3-231ENST00000568422 C5orf17Q8NAS9 161 aa11.34□□□□□ -0.59
CLN3-231ENST00000568422 NTN5Q8WTR8 489 aaPredicted RBP11.34□□□□□ -0.59
CLN3-231ENST00000568422 TRBV6-4A0A1B0GX49 114 aa11.33□□□□□ -0.6
CLN3-231ENST00000568422 IBA57-AS1B1ANH7 110 aa11.33□□□□□ -0.6
CLN3-231ENST00000568422 ARL14EPLP0DKL9 152 aa11.33□□□□□ -0.6
CLN3-231ENST00000568422 CDC34P49427 236 aaPredicted RBP11.33□□□□□ -0.6
CLN3-231ENST00000568422 RHOHQ15669 191 aa11.33□□□□□ -0.6
CLN3-231ENST00000568422 Q5VSD8 79 aa11.33□□□□□ -0.6
CLN3-231ENST00000568422 PTH2Q96A98 100 aa11.33□□□□□ -0.6
CLN3-231ENST00000568422 HMGB3O15347 200 aaKnown RBP11.32□□□□□ -0.6
CLN3-231ENST00000568422 RS1O15537 224 aa11.32□□□□□ -0.6
CLN3-231ENST00000568422 TCRAP04437 139 aa11.32□□□□□ -0.6
CLN3-231ENST00000568422 STAG3L2P0CL84 134 aa11.32□□□□□ -0.6
CLN3-231ENST00000568422 STAG3L3P0CL85 134 aa11.32□□□□□ -0.6
CLN3-231ENST00000568422 CFAP126Q5VTH2 177 aa11.32□□□□□ -0.6
CLN3-231ENST00000568422 OR2G3Q8NGZ4 309 aa11.32□□□□□ -0.6
CLN3-231ENST00000568422 SUN5Q8TC36 379 aa11.32□□□□□ -0.6
CLN3-231ENST00000568422 LRCOL1A6NCL2 159 aa11.31□□□□□ -0.6
CLN3-231ENST00000568422 MBP02144 154 aa11.31□□□□□ -0.6
CLN3-231ENST00000568422 ZFP69Q49AA0 526 aa11.31□□□□□ -0.6
CLN3-231ENST00000568422 OR10J3Q5JRS4 329 aa11.31□□□□□ -0.6
CLN3-231ENST00000568422 PSMG3Q9BT73 122 aaPredicted RBP11.31□□□□□ -0.6
CLN3-231ENST00000568422 TMEM70Q9BUB7 260 aa11.31□□□□□ -0.6
CLN3-231ENST00000568422 SH3BGRL3Q9H299 93 aa11.31□□□□□ -0.6
CLN3-231ENST00000568422 HERC1Q15751 4861 aa11.3□□□□□ -0.6
CLN3-231ENST00000568422 IGLV5-52A0A0A0MRZ9 124 aa11.3□□□□□ -0.6
CLN3-231ENST00000568422 GCGP01275 180 aa11.3□□□□□ -0.6
CLN3-231ENST00000568422 MGST1P10620 155 aaKnown RBP11.3□□□□□ -0.6
CLN3-231ENST00000568422 SERF2P84101 59 aa11.3□□□□□ -0.6
CLN3-231ENST00000568422 SMUG1Q53HV7 270 aa11.3□□□□□ -0.6
CLN3-231ENST00000568422 SGK494Q96LW2 274 aa11.3□□□□□ -0.6
CLN3-231ENST00000568422 C9orf85Q96MD7 179 aa11.3□□□□□ -0.6
CLN3-231ENST00000568422 C11orf21Q9P2W6 132 aa11.3□□□□□ -0.6
CLN3-231ENST00000568422 PSG8Q9UQ74 426 aa11.3□□□□□ -0.6
CLN3-231ENST00000568422 GCHFRP30047 84 aa11.29□□□□□ -0.6
CLN3-231ENST00000568422 ZNF80P51504 273 aaPredicted RBP11.29□□□□□ -0.6
CLN3-231ENST00000568422 SAPCD1Q5SSQ6 148 aa11.29□□□□□ -0.6
CLN3-231ENST00000568422 LELP1Q5T871 98 aa11.29□□□□□ -0.6
CLN3-231ENST00000568422 RAB24Q969Q5 203 aa11.29□□□□□ -0.6
CLN3-231ENST00000568422 GTSF1LQ9H1H1 148 aa11.29□□□□□ -0.6
CLN3-231ENST00000568422 TMEM167BQ9NRX6 74 aa11.29□□□□□ -0.6
CLN3-231ENST00000568422 FAT1Q14517 4588 aa11.28□□□□□ -0.6
CLN3-231ENST00000568422 FAM229AH3BQW9 127 aa11.28□□□□□ -0.6
CLN3-231ENST00000568422 PTTG1O95997 202 aa11.28□□□□□ -0.6
CLN3-231ENST00000568422 CXorf1O96002 111 aa11.28□□□□□ -0.6
CLN3-231ENST00000568422 IGLV2-11P01706 119 aa11.28□□□□□ -0.6
CLN3-231ENST00000568422 FLI1Q01543 452 aaPredicted RBP11.28□□□□□ -0.6
CLN3-231ENST00000568422 LAGE3Q14657 143 aa11.28□□□□□ -0.6
CLN3-231ENST00000568422 PIK3CD-AS1Q5SR53 167 aa11.28□□□□□ -0.6
CLN3-231ENST00000568422 DPPA3Q6W0C5 159 aa11.28□□□□□ -0.6
CLN3-231ENST00000568422 CYB561D1Q8N8Q1 229 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms